Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p67250 Brassica napus HOM05D004358 ORTHO05D004960 8.1e-222 773.5 403 100.0
BolC8t52682H Brassica oleracea HOM05D004358 ORTHO05D004960 2.9e-179 632.1 418 81.8
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 2.1e-169 599.4 332 91.0
C08p51540 Brassica napus HOM05D004358 ORTHO05D004960 3.7e-166 588.6 412 77.2
Thhalv10007955m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 4.7e-153 545.0 404 72.8
AT1G05900 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 3.0e-152 542.3 422 70.9
AL1G15860 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 2.6e-151 539.3 408 72.1
Carub.0001s0527 Capsella rubella HOM05D004358 ORTHO05D004960 1.4e-149 533.5 409 71.1
BcaC07g42102 Brassica carinata HOM05D004358 ORTHO05D004960 1.1e-146 523.9 413 70.0
Aa31LG5G5430 Aethionema arabicum HOM05D004358 ORTHO05D004960 7.3e-130 468.0 343 70.6
AL4G26720 Arabidopsis lyrata HOM05D004358 ORTHO05D004960 8.1e-129 464.5 336 70.2
CARHR125100 Cardamine hirsuta HOM05D004358 ORTHO05D004960 1.8e-128 463.4 337 70.6
AT2G31450 Arabidopsis thaliana HOM05D004358 ORTHO05D004960 5.2e-128 461.8 335 69.6
Sp4g13930 Schrenkiella parvula HOM05D004358 ORTHO05D004960 4.4e-127 458.8 330 70.0
Thhalv10016815m.g Eutrema salsugineum HOM05D004358 ORTHO05D004960 2.4e-125 453.0 335 69.0
Carub.0004s1278 Capsella rubella HOM05D004358 ORTHO05D004960 6.0e-124 448.4 322 70.5
C03p20720 Brassica napus HOM05D004358 ORTHO05D004960 3.9e-123 445.7 338 66.3
BolC3t14451H Brassica oleracea HOM05D004358 ORTHO05D004960 5.1e-123 445.3 339 67.3
BcaC01g05950 Brassica carinata HOM05D004358 ORTHO05D004960 6.6e-123 444.9 337 65.9
Sp1g04740 Schrenkiella parvula HOM05D004358 ORTHO05D004960 8.6e-123 444.5 397 62.7
THA.LOC104827388 Tarenaya hassleriana HOM05D004358 ORTHO05D004960 2.5e-122 443.0 324 70.1
A03p17630 Brassica napus HOM05D004358 ORTHO05D004960 9.6e-122 441.0 357 64.4
BcaB01g04044 Brassica carinata HOM05D004358 ORTHO05D004960 1.6e-121 440.3 338 64.8
BraA03t11028Z Brassica rapa HOM05D004358 ORTHO05D004960 3.6e-121 439.1 349 64.5
COL.COLO4_02723 Corchorus olitorius HOM05D004358 ORTHO05D004960 3.2e-117 426.0 335 65.1
Dinv22724 Davidia involucrata HOM05D004358 ORTHO05D004960 6.6e-115 418.3 341 62.8
Cfa015153 Carpinus fangiana HOM05D004358 ORTHO05D004960 8.7e-115 417.9 337 62.6
Duzib151G0384 Durio zibethinus HOM05D004358 ORTHO05D004960 1.1e-114 417.5 336 64.0
GSVIVG01010748001 Vitis vinifera HOM05D004358 ORTHO05D004960 1.3e-113 414.1 338 62.1
CANSAT78G2120 Cannabis sativa HOM05D004358 ORTHO05D004960 1.6e-113 413.7 332 63.6
Potri.007G127600 Populus trichocarpa HOM05D004358 ORTHO05D004960 2.8e-113 412.9 331 62.8
Sc13g0005360 Simmondsia chinensis HOM05D004358 ORTHO05D004960 2.8e-113 412.9 323 63.8
Ciclev10020813m.g Citrus clementina HOM05D004358 ORTHO05D004960 6.9e-112 408.3 317 63.7
RcHm_v2.0_Chr4g0407021 Rosa chinensis HOM05D004358 ORTHO05D004960 4.5e-111 405.6 315 65.1
MD04G1007400 Malus domestica HOM05D004358 ORTHO05D004960 5.8e-111 405.2 333 63.1
Manes.04G041200 Manihot esculenta HOM05D004358 ORTHO05D004960 5.8e-111 405.2 309 64.4
TWI59G0142 Tripterygium wilfordii HOM05D004358 ORTHO05D004960 7.6e-111 404.8 330 61.5
Actinidia39855 Actinidia chinensis HOM05D004358 ORTHO05D004960 2.2e-110 403.3 333 61.0
MELO3C017721.2 Cucumis melo HOM05D004358 ORTHO05D004960 1.1e-109 401.0 348 62.6
CsaV3_4G003300 Cucumis sativus L. HOM05D004358 ORTHO05D004960 1.6e-108 397.1 342 60.8
PSO732G0278 Papaver somniferum HOM05D004358 ORTHO05D004960 2.7e-108 396.4 353 58.1
FAN12G4165 Fragaria x ananassa HOM05D004358 ORTHO05D004960 3.5e-108 396.0 323 63.2
Sed0019525 Sechium edule HOM05D004358 ORTHO05D004960 3.5e-108 396.0 337 61.1
FvH4_4g10690 Fragaria vesca HOM05D004358 ORTHO05D004960 6.0e-108 395.2 323 63.2
Atru.chr3.1531 Acer truncatum HOM05D004358 ORTHO05D004960 7.9e-108 394.8 243 75.7
PSO675G5046 Papaver somniferum HOM05D004358 ORTHO05D004960 1.3e-107 394.0 360 56.7
Prupe.1G191600 Prunus persica HOM05D004358 ORTHO05D004960 1.8e-107 393.7 335 60.3
FAN12G1706 Fragaria x ananassa HOM05D004358 ORTHO05D004960 5.1e-107 392.1 292 66.1
Gorai.011G146700 Gossypium raimondii HOM05D004358 ORTHO05D004960 5.1e-107 392.1 289 67.8
Ah.13g072910 Amaranthus hybridus HOM05D004358 ORTHO05D004960 6.7e-107 391.7 332 61.4
Solyc06g073400.3 Solanum lycopersicum HOM05D004358 ORTHO05D004960 6.7e-107 391.7 335 60.3
CiPaw.02G055200 Carya illinoinensis HOM05D004358 ORTHO05D004960 1.5e-106 390.6 336 58.6
AUR62002292 Chenopodium quinoa HOM05D004358 ORTHO05D004960 2.5e-106 389.8 295 65.8
Hund03152 Selenicereus undatus HOM05D004358 ORTHO05D004960 2.5e-106 389.8 330 57.9
arahy.Tifrunner.gnm1.ann1.CJKM5C Arachis hypogaea HOM05D004358 ORTHO05D004960 3.3e-106 389.4 341 57.5
MSTRG.6615 Avicennia marina HOM05D004358 ORTHO05D004960 1.3e-105 387.5 336 60.1
Nitab4.5_0005570g0020 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.3e-105 387.5 346 59.2
TAR362G1164 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.3e-105 387.5 318 59.7
Lalb_Chr01g0003211 Lupinus albus HOM05D004358 ORTHO05D004960 1.6e-105 387.1 334 59.0
Sopen06g029780 Solanum pennellii HOM05D004358 ORTHO05D004960 2.1e-105 386.7 335 60.0
unitig_8.g4603 Utricularia gibba HOM05D004358 ORTHO05D004960 2.1e-105 386.7 262 68.3
FAN07G2248 Fragaria x ananassa HOM05D004358 ORTHO05D004960 6.2e-105 385.2 347 59.1
Cc00_g17220 Coffea canephora HOM05D004358 ORTHO05D004960 8.1e-105 384.8 334 59.0
PGR142G0453 Punica granatum HOM05D004358 ORTHO05D004960 1.4e-104 384.0 356 57.6
Atru.chr3.1534 Acer truncatum HOM05D004358 ORTHO05D004960 3.1e-104 382.9 250 73.2
VMungo1127G0908 Vigna mungo HOM05D004358 ORTHO05D004960 5.3e-104 382.1 343 59.5
ATR0686G198 Amborella trichopoda HOM05D004358 ORTHO05D004960 3.4e-103 379.4 340 59.1
AUR62015399 Chenopodium quinoa HOM05D004358 ORTHO05D004960 4.5e-103 379.0 327 60.9
PSO732G0822 Papaver somniferum HOM05D004358 ORTHO05D004960 7.6e-103 378.3 348 55.7
Lj3g0009399 Lotus japonicus HOM05D004358 ORTHO05D004960 1.7e-102 377.1 344 58.1
Medtr4g067060 Medicago truncatula HOM05D004358 ORTHO05D004960 6.4e-102 375.2 313 60.4
Phvul.011G055100 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 1.1e-101 374.4 302 63.2
TAR636G1513 Trochodendron aralioides HOM05D004358 ORTHO05D004960 1.4e-101 374.0 274 65.7
Glyma.11G128600 Glycine max HOM05D004358 ORTHO05D004960 2.4e-101 373.2 336 58.6
Psat7g213960 Pisum sativum HOM05D004358 ORTHO05D004960 4.2e-101 372.5 289 63.3
Ciclev10020816m.g Citrus clementina HOM05D004358 ORTHO05D004960 5.5e-101 372.1 312 61.5
TPR.G34203 Trifolium pratense HOM05D004358 ORTHO05D004960 5.5e-101 372.1 292 63.7
vmacro15647 Vaccinium macrocarpon HOM05D004358 ORTHO05D004960 1.6e-100 370.5 386 53.6
CAN.G65.181 Capsicum annuum HOM05D004358 ORTHO05D004960 4.6e-100 369.0 334 56.9
Peaxi162Scf00375g00513 Petunia axillaris HOM05D004358 ORTHO05D004960 7.9e-100 368.2 319 60.5
Thecc.04G185400 Theobroma cacao HOM05D004358 ORTHO05D004960 3.9e-99 365.9 335 57.6
Sabra07G0103600 Salix brachista HOM05D004358 ORTHO05D004960 6.7e-99 365.2 304 61.8
SalBow7G0323 Salvia bowleyana HOM05D004358 ORTHO05D004960 1.5e-98 364.0 339 54.6
Ca_20780_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 2.5e-98 363.2 303 59.4
HanXRQChr06g0172341 Helianthus annuus HOM05D004358 ORTHO05D004960 9.6e-98 361.3 334 55.4
Hund03151 Selenicereus undatus HOM05D004358 ORTHO05D004960 1.3e-97 360.9 291 61.5
Lsat_1_v5_gn_8_80540 Lactuca sativa HOM05D004358 ORTHO05D004960 8.2e-97 358.2 333 56.2
Rhsim02G0076600 Rhododendron simsii HOM05D004358 ORTHO05D004960 5.3e-96 355.5 384 50.5
EL10Ac3g05922 Beta vulgaris HOM05D004358 ORTHO05D004960 6.9e-96 355.1 355 56.6
CARHR005460 Cardamine hirsuta HOM05D004358 ORTHO05D004960 6.9e-96 355.1 188 91.0
Gohir.D10G133000 Gossypium hirsutum HOM05D004358 ORTHO05D004960 9.0e-96 354.8 332 58.1
CSS0013619 Camellia sinensis var. sinensis HOM05D004358 ORTHO05D004960 5.8e-95 352.1 339 55.5
ECA236G3148 Erigeron canadensis HOM05D004358 ORTHO05D004960 4.9e-94 349.0 331 55.9
PGSC0003DMG401006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 6.5e-94 348.6 317 57.1
arahy.Tifrunner.gnm1.ann1.VZ0ARL Arachis hypogaea HOM05D004358 ORTHO05D004960 1.9e-93 347.1 250 66.8
Glyma.13G343700 Glycine max HOM05D004358 ORTHO05D004960 7.1e-93 345.1 249 65.5
Lj3g0017360 Lotus japonicus HOM05D004358 ORTHO05D004960 9.3e-93 344.7 238 67.6
Sopen09g031880 Solanum pennellii HOM05D004358 ORTHO05D004960 9.3e-93 344.7 272 61.0
CAN.G749.19 Capsicum annuum HOM05D004358 ORTHO05D004960 1.2e-92 344.4 241 67.2
Ca_01263_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.6e-92 344.0 246 69.1
Peaxi162Scf00058g01717 Petunia axillaris HOM05D004358 ORTHO05D004960 1.6e-92 344.0 337 54.6
Zm00001eb406830 Zea mays HOM05D004358 ORTHO05D004960 2.1e-92 343.6 306 55.9
Medtr2g098660 Medicago truncatula HOM05D004358 ORTHO05D004960 2.7e-92 343.2 283 60.4
ECA236G1172 Erigeron canadensis HOM05D004358 ORTHO05D004960 6.0e-92 342.0 292 59.2
SGA_v2.0_scaffold181G39728 Striga asiatica HOM05D004358 ORTHO05D004960 2.5e-90 336.7 317 55.8
SHI24906 Sapria himalayana HOM05D004358 ORTHO05D004960 1.6e-89 334.0 281 58.7
Aqoxy7G00192 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 2.2e-89 333.6 331 52.6
Nitab4.5_0001787g0060 Nicotiana tabacum HOM05D004358 ORTHO05D004960 4.8e-89 332.4 325 53.2
Phvul.005G152500 Phaseolus vulgaris HOM05D004358 ORTHO05D004960 1.8e-88 330.5 247 64.8
arahy.Tifrunner.gnm1.ann1.Z962T9 Arachis hypogaea HOM05D004358 ORTHO05D004960 5.3e-88 328.9 287 56.1
Nitab4.5_0000941g0030 Nicotiana tabacum HOM05D004358 ORTHO05D004960 1.0e-86 324.7 327 53.8
arahy.Tifrunner.gnm1.ann1.98UW30 Arachis hypogaea HOM05D004358 ORTHO05D004960 3.8e-86 322.8 226 67.3
SMO347G0587 Selaginella moellendorffii HOM05D004358 ORTHO05D004960 2.1e-84 317.0 241 63.1
Aqoxy7G00191 Aquilegia oxysepala HOM05D004358 ORTHO05D004960 7.9e-84 315.1 319 52.4
Nn1g09578 Nelumbo nucifera HOM05D004358 ORTHO05D004960 5.7e-82 308.9 209 67.5
Nitab4.5_0003132g0140 Nicotiana tabacum HOM05D004358 ORTHO05D004960 4.8e-81 305.8 347 51.3
Haze_01520 Corylus avellana HOM05D004358 ORTHO05D004960 5.3e-80 302.4 186 74.2
Mapoly0058s0068 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.5e-79 300.8 248 56.5
ClCG07G015600 Citrullus lanatus HOM05D004358 ORTHO05D004960 2.6e-79 300.1 270 57.0
QL10p048514 Quercus lobata HOM05D004358 ORTHO05D004960 5.9e-79 298.9 186 74.2
CBR_g29622 Chara braunii HOM05D004358 ORTHO05D004960 5.0e-78 295.8 247 57.5
Eucgr.H00376 Eucalyptus grandis HOM05D004358 ORTHO05D004960 7.4e-74 282.0 174 75.3
Psat1g007160 Pisum sativum HOM05D004358 ORTHO05D004960 2.2e-73 280.4 200 68.0
Mapoly0058s0067 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.1e-72 278.1 262 52.7
Solyc09g083003.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 3.4e-71 273.1 182 68.1
Migut.M00111 Erythranthe guttata HOM05D004358 ORTHO05D004960 2.9e-70 270.0 259 53.7
DCAR_028143 Daucus carota HOM05D004358 ORTHO05D004960 2.5e-69 266.9 187 66.8
Gohir.A10G133700 Gossypium hirsutum HOM05D004358 ORTHO05D004960 3.3e-58 229.9 176 64.2
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 3.3e-58 229.9 131 73.3
Haze_27447 Corylus avellana HOM05D004358 ORTHO05D004960 3.1e-56 223.4 233 49.8
Pp3c17_17810 Physcomitrium patens HOM05D004358 ORTHO05D004960 8.0e-52 208.8 287 40.1
BcaC07g42101 Brassica carinata HOM05D004358 ORTHO05D004960 2.7e-47 193.7 99 96.0
Cfa026201 Carpinus fangiana HOM05D004358 ORTHO05D004960 2.3e-46 190.7 251 41.4
Ca_18838_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 1.5e-45 188.0 114 74.6
CAN.G80.26 Capsicum annuum HOM05D004358 ORTHO05D004960 6.1e-44 182.6 249 41.4
AagrBONN_evm.TU.Sc2ySwM_368.679 Anthoceros agrestis HOM05D004358 ORTHO05D004960 1.4e-43 181.4 194 47.9
PGSC0003DMG401026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 2.3e-43 180.6 107 74.8
Glyma.12G053100 Glycine max HOM05D004358 ORTHO05D004960 4.5e-39 166.4 112 72.3
DCAR_028139 Daucus carota HOM05D004358 ORTHO05D004960 3.3e-29 133.7 75 73.3
Mapoly0058s0064 Marchantia polymorpha HOM05D004358 ORTHO05D004960 1.2e-28 131.7 100 61.0
Cpa.g.sc41.25 Carica papaya HOM05D004358 ORTHO05D004960 1.0e-22 112.1 75 72.0
Lj3A203T17 Lonicera japonica HOM05D004358 ORTHO05D004960 2.5e-21 107.5 105 57.1
Cpa.g.sc41.31 Carica papaya HOM05D004358 ORTHO05D004960 3.3e-21 107.1 74 70.3
PGSC0003DMG402026906 Solanum tuberosum HOM05D004358 ORTHO05D004960 1.1e-19 102.1 153 45.8
BcaC01g05951 Brassica carinata HOM05D004358 ORTHO05D004960 4.0e-19 100.1 126 44.4
QL10p048520 Quercus lobata HOM05D004358 ORTHO05D004960 6.8e-19 99.4 88 60.2
Glyma.15G030650 Glycine max HOM05D004358 ORTHO05D004960 9.9e-18 95.5 91 53.8
SalBow1G3505 Salvia bowleyana HOM05D004358 ORTHO05D004960 2.9e-17 94.0 150 40.7
Rhsim02G0076400 Rhododendron simsii HOM05D004358 ORTHO05D004960 1.9e-16 91.3 92 48.9
Ca_29315_v3 Cicer arietinum L. HOM05D004358 ORTHO05D004960 7.1e-16 89.4 152 34.2
Gohir.D08G144100 Gossypium hirsutum HOM05D004358 ORTHO05D004960 1.6e-15 88.2 83 54.2
Cre17.g732050 Chlamydomonas reinhardtii HOM05D004358 ORTHO05D004960 1.7e-14 84.7 200 29.5
Solyc09g083007.1 Solanum lycopersicum HOM05D004358 ORTHO05D004960 2.8e-12 77.4 86 47.7
PGSC0003DMG402006099 Solanum tuberosum HOM05D004358 ORTHO05D004960 6.2e-12 76.3 47 70.2
CAN.G541.14 Capsicum annuum HOM05D004358 ORTHO05D004960 5.2e-11 73.2 58 58.6
PRCOL_00001550 Prasinoderma coloniale HOM05D004358 ORTHO05D004960 5.2e-11 73.2 165 27.3
MCO12G048 Micromonas commoda HOM05D006570 ORTHO05D008193 1.2e-10 72.0 238 28.2
Pp3c18_200 Physcomitrium patens HOM05D006570 ORTHO05D008193 2.0e-10 71.2 187 28.3
Cre02.g082000 Chlamydomonas reinhardtii HOM05D006570 ORTHO05D008193 1.7e-09 68.2 197 26.4
CAN.G1292.3 Capsicum annuum HOM05D004358 ORTHO05D004960 6.4e-09 66.2 58 53.4
Haze_01519 Corylus avellana HOM05D004358 ORTHO05D004960 8.4e-09 65.9 218 28.0
Lj3C203G5 Lonicera japonica HOM05D009066 ORTHO05D004960 5.4e-08 63.2 37 70.3
PSO170G2695 Papaver somniferum HOM05D006570 ORTHO05D008193 9.2e-08 62.4 227 23.3
Ciclev10015195m.g Citrus clementina HOM05D006570 ORTHO05D008193 1.6e-07 61.6 194 26.8
Mapoly0043s0062 Marchantia polymorpha HOM05D006570 ORTHO05D008193 2.1e-07 61.2 183 30.1
ECA236G3480 Erigeron canadensis HOM05D006570 ORTHO05D008193 7.8e-07 59.3 173 30.1
Oeu007466.1 Olea europaea HOM05D004358 ORTHO05D004960 7.8e-07 59.3 126 34.9
PSO478G1802 Papaver somniferum HOM05D007129 ORTHO05D008680 1.0e-06 58.9 204 29.9
CDE04G2311 Ceratophyllum demersum HOM05D007129 ORTHO05D008680 1.3e-06 58.5 173 32.4
arahy.Tifrunner.gnm1.ann1.N5JW36 Arachis hypogaea HOM05D006570 ORTHO05D008193 1.7e-06 58.2 217 23.5
PRCOL_00001086 Prasinoderma coloniale HOM05D006570 ORTHO05D008193 3.9e-06 57.0 195 24.1
arahy.Tifrunner.gnm1.ann1.L2UBUE Arachis hypogaea HOM05D006570 ORTHO05D008193 5.1e-06 56.6 217 23.5


User provided reference genes

Program Settings