Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p26740 Brassica napus HOM05D003850 ORTHO05D004515 2.5e-245 852.0 560 100.0
BraA09t38246Z Brassica rapa HOM05D003850 ORTHO05D004515 1.4e-224 783.1 565 87.6
BolC9t56221H Brassica oleracea HOM05D003850 ORTHO05D004515 1.3e-206 723.4 573 78.2
C09p33830 Brassica napus HOM05D003850 ORTHO05D004515 1.5e-205 719.9 562 88.3
BcaC04g21251 Brassica carinata HOM05D003850 ORTHO05D004515 1.9e-184 649.8 510 89.8
BcaB01g02623 Brassica carinata HOM05D003850 ORTHO05D004515 3.5e-162 575.9 528 81.2
BcaB01g01757 Brassica carinata HOM05D003850 ORTHO05D004515 8.5e-161 571.2 524 73.3
AL6G47570 Arabidopsis lyrata HOM05D003850 ORTHO05D004515 3.1e-155 552.7 542 67.3
C03p36090 Brassica napus HOM05D003850 ORTHO05D004515 5.3e-155 552.0 541 70.1
A03p29830 Brassica napus HOM05D003850 ORTHO05D004515 1.2e-154 550.8 549 66.7
BraA03t12173Z Brassica rapa HOM05D003850 ORTHO05D004515 1.6e-154 550.4 550 66.5
BcaC01g04577 Brassica carinata HOM05D003850 ORTHO05D004515 2.7e-154 549.7 543 70.2
BolC3t15918H Brassica oleracea HOM05D003850 ORTHO05D004515 2.7e-154 549.7 543 70.2
AT4G12610 Arabidopsis thaliana HOM05D003850 ORTHO05D004515 1.0e-150 537.7 544 68.0
THA.LOC104812992 Tarenaya hassleriana HOM05D003850 ORTHO05D004515 1.8e-150 537.0 547 63.8
Carub.0006s3188 Capsella rubella HOM05D003850 ORTHO05D004515 1.7e-145 520.4 546 64.5
Sp6g04900 Schrenkiella parvula HOM05D003850 ORTHO05D004515 1.1e-144 517.7 540 69.1
CARHR253560 Cardamine hirsuta HOM05D003850 ORTHO05D004515 1.6e-143 513.8 541 63.2
Thhalv10028564m.g Eutrema salsugineum HOM05D003850 ORTHO05D004515 2.2e-140 503.4 540 65.6
Aa31LG9G10040 Aethionema arabicum HOM05D003850 ORTHO05D004515 3.1e-139 499.6 558 63.8
MSTRG.7170 Avicennia marina HOM05D003850 ORTHO05D004515 1.0e-137 494.6 539 62.9
QL05p069776 Quercus lobata HOM05D003850 ORTHO05D004515 8.6e-137 491.5 543 59.1
CSS0032808 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 6.1e-135 485.3 537 60.7
Nn1g03331 Nelumbo nucifera HOM05D003850 ORTHO05D004515 6.8e-134 481.9 551 59.5
Aqoxy1G04110 Aquilegia oxysepala HOM05D003850 ORTHO05D004515 8.9e-134 481.5 537 57.2
Migut.M01390 Erythranthe guttata HOM05D003850 ORTHO05D004515 9.8e-133 478.0 537 59.4
arahy.Tifrunner.gnm1.ann1.C17RPB Arachis hypogaea HOM05D003850 ORTHO05D004515 2.9e-132 476.5 540 55.9
Nitab4.5_0000143g0310 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.9e-132 476.5 526 66.2
Nitab4.5_0001198g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 2.9e-132 476.5 526 60.1
Ciclev10014841m.g Citrus clementina HOM05D003850 ORTHO05D004515 6.4e-132 475.3 540 57.2
CiPaw.09G102000 Carya illinoinensis HOM05D003850 ORTHO05D004515 5.4e-131 472.2 543 58.7
Potri.016G015100 Populus trichocarpa HOM05D003850 ORTHO05D004515 7.0e-131 471.9 541 66.0
Sopen11g006940 Solanum pennellii HOM05D003850 ORTHO05D004515 1.2e-130 471.1 536 57.6
CSS0007684 Camellia sinensis var. sinensis HOM05D003850 ORTHO05D004515 7.8e-130 468.4 544 55.7
Atru.chr1.2461 Acer truncatum HOM05D003850 ORTHO05D004515 1.0e-129 468.0 542 56.8
Ca_00718_v3 Cicer arietinum L. HOM05D003850 ORTHO05D004515 1.0e-129 468.0 539 54.7
arahy.Tifrunner.gnm1.ann1.IIR6TV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.7e-129 467.2 540 55.6
CANSAT56G0590 Cannabis sativa HOM05D003850 ORTHO05D004515 3.9e-129 466.1 538 55.9
Lalb_Chr20g0119201 Lupinus albus HOM05D003850 ORTHO05D004515 5.0e-129 465.7 544 60.1
Phvul.006G143600 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 5.0e-129 465.7 542 58.1
Glyma.09G009900 Glycine max HOM05D003850 ORTHO05D004515 6.6e-129 465.3 538 56.1
Potri.006G009100 Populus trichocarpa HOM05D003850 ORTHO05D004515 1.1e-128 464.5 541 56.2
SalBow8G5272 Salvia bowleyana HOM05D003850 ORTHO05D004515 5.6e-128 462.2 552 56.9
Actinidia39269 Actinidia chinensis HOM05D003850 ORTHO05D004515 3.6e-127 459.5 362 73.5
TAR624G0821 Trochodendron aralioides HOM05D003850 ORTHO05D004515 3.6e-127 459.5 543 57.6
Glyma.15G114200 Glycine max HOM05D003850 ORTHO05D004515 6.2e-127 458.8 541 64.3
TAR629G2665 Trochodendron aralioides HOM05D003850 ORTHO05D004515 6.8e-126 455.3 542 58.1
Gorai.010G186300 Gossypium raimondii HOM05D003850 ORTHO05D004515 1.2e-125 454.5 560 61.4
Sed0003006 Sechium edule HOM05D003850 ORTHO05D004515 3.4e-125 453.0 539 54.0
PSO210G4264 Papaver somniferum HOM05D003850 ORTHO05D004515 4.4e-125 452.6 546 59.0
HPP92_001629 Vanilla planifolia HOM05D003850 ORTHO05D004515 7.5e-125 451.8 530 54.9
Gohir.A06G153120 Gossypium hirsutum HOM05D003850 ORTHO05D004515 1.3e-124 451.1 559 60.6
PSO302G0165 Papaver somniferum HOM05D003850 ORTHO05D004515 1.7e-124 450.7 546 66.3
Gohir.D06G159600 Gossypium hirsutum HOM05D003850 ORTHO05D004515 2.2e-124 450.3 560 61.4
RhsimUnG0025700 Rhododendron simsii HOM05D003850 ORTHO05D004515 6.4e-124 448.7 588 53.2
RhsimUnG0028500 Rhododendron simsii HOM05D003850 ORTHO05D004515 8.3e-124 448.4 587 53.3
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.4e-123 447.6 538 57.1
Duzib160G0220 Durio zibethinus HOM05D003850 ORTHO05D004515 1.2e-122 444.5 565 51.0
Thecc.06G232700 Theobroma cacao HOM05D003850 ORTHO05D004515 1.2e-122 444.5 552 55.4
VMungo0540G1287 Vigna mungo HOM05D003850 ORTHO05D004515 7.8e-122 441.8 542 53.1
Cc09_g00920 Coffea canephora HOM05D003850 ORTHO05D004515 1.9e-120 437.2 541 56.6
Eucgr.E03951 Eucalyptus grandis HOM05D003850 ORTHO05D004515 1.9e-120 437.2 549 56.3
VMungo1215G3075 Vigna mungo HOM05D003850 ORTHO05D004515 3.3e-120 436.4 543 56.2
ECA233G3046 Erigeron canadensis HOM05D003850 ORTHO05D004515 3.6e-119 433.0 553 58.2
MBI16_g42266_MAGBIO Magnolia biondii HOM05D003850 ORTHO05D004515 6.8e-118 428.7 540 55.4
Oeu002760.2 Olea europaea HOM05D003850 ORTHO05D004515 1.2e-117 427.9 572 54.4
arahy.Tifrunner.gnm1.ann1.97WSNQ Arachis hypogaea HOM05D003850 ORTHO05D004515 4.4e-117 426.0 554 54.5
CsaV3_3G028740 Cucumis sativus L. HOM05D003850 ORTHO05D004515 9.9e-117 424.9 538 52.8
SEGI_18521 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.3e-116 424.5 555 61.1
ClCG07G001740 Citrullus lanatus HOM05D003850 ORTHO05D004515 1.7e-116 424.1 538 53.9
Prupe.4G011300 Prunus persica HOM05D003850 ORTHO05D004515 2.9e-116 423.3 537 53.1
SGA_v2.0_scaffold4G01878 Striga asiatica HOM05D003850 ORTHO05D004515 2.9e-116 423.3 524 56.7
PGR102G0753 Punica granatum HOM05D003850 ORTHO05D004515 6.4e-116 422.2 542 57.4
GSVIVG01003352001 Vitis vinifera HOM05D003850 ORTHO05D004515 1.9e-115 420.6 544 56.6
FvH4_3g01042 Fragaria vesca HOM05D003850 ORTHO05D004515 3.2e-115 419.9 553 53.3
TPR.G3343 Trifolium pratense HOM05D003850 ORTHO05D004515 3.2e-115 419.9 564 51.6
ATR0751G086 Amborella trichopoda HOM05D003850 ORTHO05D004515 2.7e-114 416.8 548 54.0
Manes.07G088900 Manihot esculenta HOM05D003850 ORTHO05D004515 3.5e-114 416.4 542 53.1
Lj6g0013016 Lotus japonicus HOM05D003850 ORTHO05D004515 1.0e-113 414.8 546 63.7
Solyc11g012150.3 Solanum lycopersicum HOM05D003850 ORTHO05D004515 1.3e-113 414.5 499 56.3
PGSC0003DMG400013344 Solanum tuberosum HOM05D003850 ORTHO05D004515 3.0e-113 413.3 500 56.6
vmacro15772 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 5.1e-113 412.5 553 57.9
Phvul.003G083500 Phaseolus vulgaris HOM05D003850 ORTHO05D004515 8.6e-113 411.8 544 55.3
Peaxi162Scf00558g00516 Petunia axillaris HOM05D003850 ORTHO05D004515 1.9e-112 410.6 481 61.5
FAN25G3770 Fragaria x ananassa HOM05D003850 ORTHO05D004515 7.3e-112 408.7 578 48.6
COL.COLO4_31876 Corchorus olitorius HOM05D003850 ORTHO05D004515 9.5e-112 408.3 518 59.5
Sabra06G0006900 Salix brachista HOM05D003850 ORTHO05D004515 3.6e-111 406.4 522 54.6
arahy.Tifrunner.gnm1.ann1.0C9QHL Arachis hypogaea HOM05D003850 ORTHO05D004515 2.4e-110 403.7 556 52.7
Medtr2g025590 Medicago truncatula HOM05D003850 ORTHO05D004515 7.6e-109 398.7 538 52.4
FAN21G1422 Fragaria x ananassa HOM05D003850 ORTHO05D004515 8.4e-108 395.2 571 50.4
Lj2A262G45 Lonicera japonica HOM05D003850 ORTHO05D004515 8.4e-108 395.2 506 54.9
CiPaw.10G077600 Carya illinoinensis HOM05D003850 ORTHO05D004515 5.4e-107 392.5 494 52.2
MD05G1357300 Malus domestica HOM05D003850 ORTHO05D004515 2.7e-106 390.2 544 52.8
HanXRQChr15g0470091 Helianthus annuus HOM05D003850 ORTHO05D004515 3.5e-106 389.8 523 59.5
AUR62021872 Chenopodium quinoa HOM05D003850 ORTHO05D004515 3.0e-105 386.7 526 49.0
Oeu044421.3 Olea europaea HOM05D003850 ORTHO05D004515 6.6e-105 385.6 348 65.2
TWI63G0294 Tripterygium wilfordii HOM05D003850 ORTHO05D004515 1.9e-104 384.0 514 59.7
unitig_748.g7103 Utricularia gibba HOM05D003850 ORTHO05D004515 3.3e-104 383.3 552 50.5
CAN.G1186.28 Capsicum annuum HOM05D003850 ORTHO05D004515 7.3e-104 382.1 541 50.6
Sabra16G0017100 Salix brachista HOM05D003850 ORTHO05D004515 2.1e-103 380.6 563 49.4
vmacro03646 Vaccinium macrocarpon HOM05D003850 ORTHO05D004515 1.8e-102 377.5 549 46.6
Sabra16G0000900 Salix brachista HOM05D003850 ORTHO05D004515 1.2e-101 374.8 530 50.4
Cpa.g.sc75.120 Carica papaya HOM05D003850 ORTHO05D004515 3.4e-101 373.2 540 52.6
Lj4g0025543 Lotus japonicus HOM05D003850 ORTHO05D004515 2.9e-100 370.2 533 47.7
Cfa000110 Carpinus fangiana HOM05D003850 ORTHO05D004515 3.8e-100 369.8 544 51.7
RcHm_v2.0_Chr5g0001581 Rosa chinensis HOM05D003850 ORTHO05D004515 3.2e-99 366.7 555 47.4
Haze_08659 Corylus avellana HOM05D003850 ORTHO05D004515 4.2e-99 366.3 551 49.9
SHI24464 Sapria himalayana HOM05D003850 ORTHO05D004515 7.1e-99 365.5 521 48.0
RhsimUnG0109100 Rhododendron simsii HOM05D003850 ORTHO05D004515 2.3e-97 360.5 509 46.4
PSO339G3925 Papaver somniferum HOM05D003850 ORTHO05D004515 1.1e-96 358.2 522 53.1
MD10G1331000 Malus domestica HOM05D003850 ORTHO05D004515 1.9e-96 357.5 510 52.2
RcHm_v2.0_Chr5g0007791 Rosa chinensis HOM05D003850 ORTHO05D004515 8.1e-95 352.1 520 49.8
Zm00001eb224360 Zea mays HOM05D003850 ORTHO05D004515 6.9e-94 349.0 476 51.9
Hund23984 Selenicereus undatus HOM05D003850 ORTHO05D004515 5.4e-91 339.3 553 48.6
Rhsim13G0146600 Rhododendron simsii HOM05D003850 ORTHO05D004515 7.9e-90 335.5 563 41.9
CDE04G2591 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.5e-88 331.3 537 46.7
Lsat_1_v5_gn_7_13561 Lactuca sativa HOM05D003850 ORTHO05D004515 4.3e-88 329.7 494 51.0
Pp3c3_2280 Physcomitrium patens HOM05D003850 ORTHO05D004515 4.3e-88 329.7 540 45.4
CDE06G1774 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 1.3e-87 328.2 325 60.0
FAN03G2951 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.1e-87 327.4 517 45.5
FvH4_3g04782 Fragaria vesca HOM05D003850 ORTHO05D004515 6.2e-87 325.9 519 45.5
FAN11G3915 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.4e-86 323.9 519 45.1
FAN21G1676 Fragaria x ananassa HOM05D003850 ORTHO05D004515 3.1e-86 323.6 517 45.3
Mapoly0105s0015 Marchantia polymorpha HOM05D003850 ORTHO05D004515 4.0e-86 323.2 552 50.5
FAN16G3024 Fragaria x ananassa HOM05D003850 ORTHO05D004515 5.8e-85 319.3 520 44.2
Zm00001eb398520 Zea mays HOM05D003850 ORTHO05D004515 1.6e-82 311.2 526 39.9
Psat1g176560 Pisum sativum HOM05D003850 ORTHO05D004515 2.7e-82 310.5 462 53.2
MELO3C012788.2 Cucumis melo HOM05D003850 ORTHO05D004515 3.3e-80 303.5 461 49.7
EL10Ac8g20176 Beta vulgaris HOM05D003850 ORTHO05D004515 2.8e-79 300.4 550 44.4
FvH4_2g22070 Fragaria vesca HOM05D003850 ORTHO05D004515 1.1e-78 298.5 523 41.7
Lj8A171G42 Lonicera japonica HOM05D003850 ORTHO05D004515 1.4e-78 298.1 506 40.9
FAN24G0125 Fragaria x ananassa HOM05D003850 ORTHO05D008045 1.7e-76 291.2 525 41.3
AagrBONN_evm.TU.Sc2ySwM_228.4136 Anthoceros agrestis HOM05D003850 ORTHO05D004515 3.8e-76 290.0 348 55.7
TPR.G34491 Trifolium pratense HOM05D003850 ORTHO05D004515 2.7e-74 283.9 195 71.8
DCAR_025996 Daucus carota HOM05D003850 ORTHO05D004515 5.5e-67 259.6 436 52.8
Medtr2g025620 Medicago truncatula HOM05D003850 ORTHO05D004515 7.2e-67 259.2 510 50.6
Peaxi162Scf00015g02110 Petunia axillaris HOM05D003850 ORTHO05D004515 1.0e-65 255.4 302 53.3
Duzib235G1223 Durio zibethinus HOM05D003850 ORTHO05D004515 1.2e-61 241.9 414 47.8
SEGI_38016 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.7e-58 229.9 303 46.9
AUR62012783 Chenopodium quinoa HOM05D003850 ORTHO05D004515 2.0e-56 224.6 403 42.7
Dinv07398 Davidia involucrata HOM05D003850 ORTHO05D004515 2.2e-52 211.1 223 70.9
HPP92_001646 Vanilla planifolia HOM05D003850 ORTHO05D004515 5.0e-52 209.9 211 65.9
QL09p006300 Quercus lobata HOM05D003850 ORTHO05D004515 1.6e-50 204.9 364 50.0
FAN25G2646 Fragaria x ananassa HOM05D003850 ORTHO05D004515 2.8e-47 194.1 475 36.0
TPR.G13041 Trifolium pratense HOM05D003850 ORTHO05D004515 1.4e-41 175.3 361 49.0
Actinidia11880 Actinidia chinensis HOM05D003850 ORTHO05D004515 1.8e-38 164.9 306 49.7
CBR_g38333 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-35 154.5 232 43.1
HPP92_001645 Vanilla planifolia HOM05D003850 ORTHO05D004515 2.8e-31 141.0 98 68.4
Gorai.002G145900 Gossypium raimondii HOM05D003850 ORTHO05D004515 3.7e-31 140.6 178 66.3
Sc17g0007710 Simmondsia chinensis HOM05D003850 ORTHO05D004515 1.1e-30 139.0 364 46.2
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 4.1e-30 137.1 184 59.8
Gohir.D01G119450 Gossypium hirsutum HOM05D003850 ORTHO05D004515 3.6e-26 124.0 105 70.5
AagrBONN_evm.TU.Sc2ySwM_228.3786 Anthoceros agrestis HOM05D003850 ORTHO05D004515 3.3e-19 100.9 140 41.4
TAR629G2548 Trochodendron aralioides HOM05D003850 ORTHO05D004515 9.5e-19 99.4 304 30.6
RcHm_v2.0_Chr6g0288941 Rosa chinensis HOM05D003850 ORTHO05D004515 3.1e-17 94.4 252 36.9
PSO339G5270 Papaver somniferum HOM05D003850 ORTHO05D004515 2.2e-15 88.2 58 65.5
VMungo0720G0179 Vigna mungo HOM05D003850 ORTHO05D004515 6.4e-15 86.7 52 75.0
CDE06G0619 Ceratophyllum demersum HOM05D003850 ORTHO05D004515 2.4e-14 84.7 190 60.0
Nitab4.5_0013082g0020 Nicotiana tabacum HOM05D003850 ORTHO05D004515 5.4e-14 83.6 72 62.5
arahy.Tifrunner.gnm1.ann1.N7GRQP Arachis hypogaea HOM05D003850 ORTHO05D004515 1.6e-13 82.0 71 62.0
arahy.Tifrunner.gnm1.ann1.UE8YUV Arachis hypogaea HOM05D003850 ORTHO05D004515 1.6e-13 82.0 71 62.0
Eucgr.A01650 Eucalyptus grandis HOM05D002251 ORTHO05D004515 1.6e-13 82.0 53 64.2
Aa31LG9G10030 Aethionema arabicum HOM05D003850 ORTHO05D004515 1.7e-12 78.6 51 74.5
arahy.Tifrunner.gnm1.ann1.5H9H8Z Arachis hypogaea HOM05D003850 ORTHO05D004515 1.7e-12 78.6 71 60.6
HPP92_001647 Vanilla planifolia HOM05D003850 ORTHO05D004515 1.7e-12 78.6 75 57.3
CARHR253550 Cardamine hirsuta HOM05D003850 ORTHO05D004515 8.6e-12 76.3 63 63.5
PSO384G4333 Papaver somniferum HOM05D003850 ORTHO05D004515 2.5e-11 74.7 65 64.6
arahy.Tifrunner.gnm1.ann1.4A53N1 Arachis hypogaea HOM05D003850 ORTHO05D004515 3.3e-11 74.3 74 56.8
Nitab4.5_0006771g0010 Nicotiana tabacum HOM05D003850 ORTHO05D004515 3.3e-11 74.3 73 57.5
Lsat_1_v5_gn_3_78300 Lactuca sativa HOM05D002115 ORTHO05D002263 2.1e-10 71.6 57 61.4
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 4.0e-09 67.4 62 58.1
arahy.Tifrunner.gnm1.ann1.GFC3N0 Arachis hypogaea HOM05D003850 ORTHO05D004515 6.8e-09 66.6 58 58.6
SEGI_19210 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 1.5e-08 65.5 130 30.0
CAN.G1186.27 Capsicum annuum HOM05D001620 ORTHO05D005461 5.8e-08 63.5 58 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3787 Anthoceros agrestis HOM05D003850 ORTHO05D004515 1.4e-06 58.9 239 39.3
SEGI_29277 Sequoiadendron giganteum HOM05D003850 ORTHO05D004515 4.1e-06 57.4 71 47.9


User provided reference genes

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