Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p41740 Brassica napus HOM05D002849 ORTHO05D007186 3.2e-189 664.8 320 100.0
BraA07t31703Z Brassica rapa HOM05D002849 ORTHO05D007186 4.5e-175 617.8 328 92.7
Thhalv10018770m.g Eutrema salsugineum HOM05D002849 ORTHO05D007186 6.1e-172 607.4 312 95.2
CARHR069720 Cardamine hirsuta HOM05D002849 ORTHO05D007186 5.2e-171 604.4 312 94.2
C04p05180 Brassica napus HOM05D002849 ORTHO05D007186 1.7e-169 599.4 317 92.1
AL2G36230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 2.2e-169 599.0 312 93.3
Sp4g26340 Schrenkiella parvula HOM05D002849 ORTHO05D007186 6.3e-169 597.4 312 93.6
A05p04470 Brassica napus HOM05D002849 ORTHO05D007186 1.1e-168 596.7 324 90.4
Carub.0002s2306 Capsella rubella HOM05D002849 ORTHO05D007186 2.4e-168 595.5 312 92.6
Carub.0004s2686 Capsella rubella HOM05D002849 ORTHO05D007186 1.2e-167 593.2 308 93.8
BraA05t19423Z Brassica rapa HOM05D002849 ORTHO05D007186 1.6e-167 592.8 334 87.7
BolC4t22158H Brassica oleracea HOM05D002849 ORTHO05D007186 2.9e-166 588.6 346 85.3
Aa31LG1G25890 Aethionema arabicum HOM05D002849 ORTHO05D007186 8.6e-166 587.0 311 92.3
AL4G43230 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.1e-165 586.6 308 92.9
AT2G44270 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 2.5e-165 585.5 308 92.5
THA.LOC104811452 Tarenaya hassleriana HOM05D002849 ORTHO05D007186 2.1e-164 582.4 312 90.1
PGR083G0750 Punica granatum HOM05D002849 ORTHO05D007186 1.4e-163 579.7 312 88.8
Thecc.08G055100 Theobroma cacao HOM05D002849 ORTHO05D007186 1.5e-162 576.2 308 89.6
Duzib093G2127 Durio zibethinus HOM05D002849 ORTHO05D007186 1.3e-161 573.2 308 89.0
Nn6g31840 Nelumbo nucifera HOM05D002849 ORTHO05D007186 1.7e-161 572.8 312 88.1
CANSAT11G2551 Cannabis sativa HOM05D002849 ORTHO05D007186 6.4e-161 570.9 308 87.7
CiPaw.08G071100 Carya illinoinensis HOM05D002849 ORTHO05D007186 6.4e-161 570.9 312 86.9
Potri.005G083500 Populus trichocarpa HOM05D002849 ORTHO05D007186 8.3e-161 570.5 304 90.1
TWI56G0831 Tripterygium wilfordii HOM05D002849 ORTHO05D007186 8.3e-161 570.5 312 87.2
FvH4_2g37771 Fragaria vesca HOM05D002849 ORTHO05D007186 1.1e-160 570.1 306 89.2
Gohir.D05G184300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 1.4e-160 569.7 308 88.3
Gorai.009G189800 Gossypium raimondii HOM05D002849 ORTHO05D007186 1.4e-160 569.7 308 88.3
Aqoxy6G01855 Aquilegia oxysepala HOM05D002849 ORTHO05D007186 2.4e-160 568.9 312 86.9
BcaNung06602 Brassica carinata HOM05D002849 ORTHO05D007186 2.4e-160 568.9 311 90.0
Prupe.1G356900 Prunus persica HOM05D002849 ORTHO05D007186 2.4e-160 568.9 311 86.8
Gohir.A05G181300 Gossypium hirsutum HOM05D002849 ORTHO05D007186 3.2e-160 568.5 308 88.0
Atru.chr13.175_Atru.chr13.176 Acer truncatum HOM05D002849 ORTHO05D007186 4.1e-160 568.2 312 87.2
Ciclev10001644m.g Citrus clementina HOM05D002849 ORTHO05D007186 4.1e-160 568.2 312 87.2
Manes.08G142100 Manihot esculenta HOM05D002849 ORTHO05D007186 1.2e-159 566.6 311 87.1
C06p50120 Brassica napus HOM05D002849 ORTHO05D007186 2.0e-159 565.8 311 91.0
Dinv39573 Davidia involucrata HOM05D002849 ORTHO05D007186 2.0e-159 565.8 313 86.3
ECA246G5259 Erigeron canadensis HOM05D002849 ORTHO05D007186 3.5e-159 565.1 312 87.8
Sed0011348 Sechium edule HOM05D002849 ORTHO05D007186 2.3e-158 562.4 312 85.9
MD08G1004800 Malus domestica HOM05D002849 ORTHO05D007186 3.0e-158 562.0 307 87.6
Lsat_1_v5_gn_3_7661 Lactuca sativa HOM05D002849 ORTHO05D007186 5.0e-158 561.2 296 90.2
PSO541G1452 Papaver somniferum HOM05D002849 ORTHO05D007186 5.0e-158 561.2 308 86.0
Eucgr.F03540 Eucalyptus grandis HOM05D002849 ORTHO05D007186 6.6e-158 560.8 312 86.2
PSO675G6932 Papaver somniferum HOM05D002849 ORTHO05D007186 1.1e-157 560.1 297 88.2
TAR376G0763 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.1e-157 560.1 313 85.6
MELO3C011328.2 Cucumis melo HOM05D002849 ORTHO05D007186 1.9e-157 559.3 309 86.1
BcaB02g08806 Brassica carinata HOM05D002849 ORTHO05D007186 2.5e-157 558.9 311 88.7
Hund05132 Selenicereus undatus HOM05D002849 ORTHO05D007186 2.5e-157 558.9 312 85.9
Cc10_g00890 Coffea canephora HOM05D002849 ORTHO05D007186 3.3e-157 558.5 312 86.2
Migut.N03194 Erythranthe guttata HOM05D002849 ORTHO05D007186 1.2e-156 556.6 311 85.9
Sc02g0008960 Simmondsia chinensis HOM05D002849 ORTHO05D007186 1.2e-156 556.6 312 84.9
GSVIVG01008705001 Vitis vinifera HOM05D002849 ORTHO05D007186 1.6e-156 556.2 326 82.2
CSS0035799 Camellia sinensis var. sinensis HOM05D002849 ORTHO05D007186 2.1e-156 555.8 306 86.3
Cfa017767 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.4e-155 553.1 313 85.6
MBI08_g35553_MAGBIO Magnolia biondii HOM05D002849 ORTHO05D007186 1.4e-155 553.1 311 85.2
Lj1g0000302 Lotus japonicus HOM05D002849 ORTHO05D007186 4.0e-155 551.6 309 84.8
vmacro21838 Vaccinium macrocarpon HOM05D002849 ORTHO05D007186 4.0e-155 551.6 367 74.9
Zm00001eb255730 Zea mays HOM05D002849 ORTHO05D007186 2.0e-154 549.3 297 88.2
HPP92_024207 Vanilla planifolia HOM05D002849 ORTHO05D007186 3.4e-154 548.5 312 84.0
ClCG08G013910 Citrullus lanatus HOM05D002849 ORTHO05D007186 4.4e-154 548.1 313 84.7
Os02g0762300 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 5.8e-154 547.7 297 88.6
Rhsim06G0009600 Rhododendron simsii HOM05D002849 ORTHO05D007186 7.5e-154 547.4 359 76.3
QL02p013578 Quercus lobata HOM05D002849 ORTHO05D007186 1.7e-153 546.2 344 79.4
Glyma.04G002200 Glycine max HOM05D002849 ORTHO05D007186 1.1e-152 543.5 309 82.8
FAN27G2060 Fragaria x ananassa HOM05D002849 ORTHO05D007186 3.2e-152 542.0 305 85.9
BcaC08g47111 Brassica carinata HOM05D002849 ORTHO05D007186 5.4e-152 541.2 311 86.8
FAN20G1564 Fragaria x ananassa HOM05D002849 ORTHO05D007186 5.4e-152 541.2 305 85.6
Medtr3g118250 Medicago truncatula HOM05D002849 ORTHO05D007186 9.2e-152 540.4 297 85.9
Phvul.009G117600 Phaseolus vulgaris HOM05D002849 ORTHO05D007186 2.3e-150 535.8 312 81.4
unitig_744.g24607 Utricularia gibba HOM05D002849 ORTHO05D007186 2.3e-150 535.8 296 85.5
Ca_15284_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.5e-149 533.1 297 84.2
Ca_15420_v3 Cicer arietinum L. HOM05D002849 ORTHO05D007186 1.5e-149 533.1 297 84.2
Haze_22739 Corylus avellana HOM05D002849 ORTHO05D007186 3.3e-149 531.9 353 75.6
CsaV3_2G024550 Cucumis sativus L. HOM05D000201 ORTHO05D000490 1.2e-148 530.0 327 80.1
arahy.Tifrunner.gnm1.ann1.ID8SUW Arachis hypogaea HOM05D002849 ORTHO05D007186 3.6e-148 528.5 296 84.8
Oeu046334.1 Olea europaea HOM05D002849 ORTHO05D007186 1.1e-147 526.9 288 86.5
Hma1.2p1_1100F.1_g257100 Hydrangea macrophylla HOM05D002849 ORTHO05D007186 3.4e-146 521.9 303 82.5
Sp5g31310 Schrenkiella parvula HOM05D002849 ORTHO05D007186 5.8e-146 521.2 311 85.2
Os01g0598900 Oryza sativa ssp. japonica HOM05D002849 ORTHO05D007186 3.7e-145 518.5 276 90.6
Lj4A14T52 Lonicera japonica HOM05D002849 ORTHO05D007186 1.1e-144 516.9 370 71.4
Nitab4.5_0001131g0060 Nicotiana tabacum HOM05D002849 ORTHO05D007186 2.7e-143 512.3 320 79.1
BolC6t40052H Brassica oleracea HOM05D002849 ORTHO05D007186 2.3e-142 509.2 311 83.9
DCAR_016752 Daucus carota HOM05D002022 ORTHO05D002056 3.3e-141 505.4 272 87.9
Mapoly0148s0040 Marchantia polymorpha HOM05D002849 ORTHO05D007186 1.2e-140 503.4 297 79.5
Cfa014032 Carpinus fangiana HOM05D002849 ORTHO05D007186 4.0e-139 498.4 311 79.1
SMO118G0346 Selaginella moellendorffii HOM05D002849 ORTHO05D007186 4.4e-138 495.0 297 77.1
BcaC08g47284 Brassica carinata HOM05D002849 ORTHO05D007186 5.8e-138 494.6 312 82.4
SGA_v2.0_scaffold19G08599 Striga asiatica HOM05D002849 ORTHO05D007186 7.6e-138 494.2 402 64.2
Pp3c27_3320 Physcomitrium patens HOM05D002849 ORTHO05D007186 2.4e-136 489.2 297 77.4
EL10Ac2g04301 Beta vulgaris HOM05D002849 ORTHO05D007186 5.8e-130 468.0 307 76.9
Lalb_Chr23g0264921 Lupinus albus HOM05D002849 ORTHO05D007186 1.7e-129 466.5 331 72.2
CBR_g55299 Chara braunii HOM05D002849 ORTHO05D007186 2.9e-129 465.7 282 75.5
VMungo1309G1771 Vigna mungo HOM05D002849 ORTHO05D007186 8.4e-129 464.2 311 72.7
arahy.Tifrunner.gnm1.ann1.D80FKX Arachis hypogaea HOM05D002849 ORTHO05D007186 2.3e-126 456.1 296 75.7
COL.COLO4_21615 Corchorus olitorius HOM05D002849 ORTHO05D007186 8.7e-126 454.1 310 74.2
TPR.G36468 Trifolium pratense HOM05D002849 ORTHO05D007186 8.7e-126 454.1 289 76.8
MD15G1004300 Malus domestica HOM05D002849 ORTHO05D007186 1.5e-122 443.4 320 70.6
Cre16.g666100 Chlamydomonas reinhardtii HOM05D002849 ORTHO05D007186 4.5e-122 441.8 288 71.9
CARHR139450 Cardamine hirsuta HOM05D002849 ORTHO05D007186 2.8e-116 422.5 215 94.9
RcHm_v2.0_Chr6g0303961 Rosa chinensis HOM05D002849 ORTHO05D007186 6.2e-116 421.4 227 89.0
HanXRQChr17g0533361 Helianthus annuus HOM05D002849 ORTHO05D007186 1.8e-115 419.9 235 86.8
AagrBONN_evm.TU.Sc2ySwM_344.4630 Anthoceros agrestis HOM05D002849 ORTHO05D007186 2.4e-115 419.5 238 82.8
Haze_27194 Corylus avellana HOM05D002849 ORTHO05D007186 5.3e-115 418.3 309 64.4
SHI05854 Sapria himalayana HOM05D002849 ORTHO05D007186 1.1e-112 410.6 309 66.7
Solyc08g074590.2 Solanum lycopersicum HOM05D002849 ORTHO05D007186 3.2e-112 409.1 226 85.4
Sopen08g023190 Solanum pennellii HOM05D002849 ORTHO05D007186 3.2e-112 409.1 226 85.4
ATR0661G072 Amborella trichopoda HOM05D002849 ORTHO05D007186 2.1e-111 406.4 240 82.9
AUR62013834 Chenopodium quinoa HOM05D002849 ORTHO05D007186 3.0e-110 402.5 310 66.8
HPP92_024246 Vanilla planifolia HOM05D002849 ORTHO05D007186 1.1e-109 400.6 239 82.0
PRCOL_00001104 Prasinoderma coloniale HOM05D002849 ORTHO05D007186 5.8e-106 388.3 309 61.5
Peaxi162Scf00166g00641 Petunia axillaris HOM05D002849 ORTHO05D007186 1.7e-105 386.7 231 81.8
AT1G76170 Arabidopsis thaliana HOM05D002849 ORTHO05D007186 7.9e-103 377.9 191 94.2
TAR628G0269 Trochodendron aralioides HOM05D002849 ORTHO05D007186 1.8e-102 376.7 234 80.3
Cpa.g.sc26.233 Carica papaya HOM05D002849 ORTHO05D007186 1.1e-101 374.0 322 62.1
AUR62036771 Chenopodium quinoa HOM05D002849 ORTHO05D007186 4.5e-98 362.1 272 68.8
Cfa027047 Carpinus fangiana HOM05D002849 ORTHO05D007186 1.9e-96 356.7 268 64.9
Nitab4.5_0000907g0040 Nicotiana tabacum HOM05D002849 ORTHO05D007186 8.2e-92 341.3 304 60.5
Ah.01g004180 Amaranthus hybridus HOM05D002849 ORTHO05D007186 4.4e-85 318.9 225 72.0
Psat5g001160 Pisum sativum HOM05D002849 ORTHO05D007186 3.0e-62 243.0 183 68.3
VMungo1309G1925 Vigna mungo HOM05D002849 ORTHO05D007186 5.0e-57 225.7 263 50.6
Lj9A176T24 Lonicera japonica HOM05D002849 ORTHO05D007186 3.1e-51 206.5 172 62.8
Peaxi162Scf00445g00105 Petunia axillaris HOM05D002849 ORTHO05D007186 1.7e-49 200.7 155 64.5
SpUn0523_0010 Schrenkiella parvula HOM05D002849 ORTHO05D007186 2.5e-40 170.2 122 73.8
CARHR139440 Cardamine hirsuta HOM05D002849 ORTHO05D007186 8.0e-39 165.2 78 97.4
Prupe.3G237200 Prunus persica HOM05D002849 ORTHO05D007186 1.9e-35 154.1 83 84.3
HanXRQChr17g0533371 Helianthus annuus HOM05D002849 ORTHO05D007186 1.5e-32 144.4 70 91.4
Peaxi162Scf00166g00633 Petunia axillaris HOM05D002849 ORTHO05D007186 3.6e-31 139.8 67 94.0
ATR0661G077 Amborella trichopoda HOM05D002849 ORTHO05D007186 8.1e-31 138.7 69 87.0
FAN08G3136 Fragaria x ananassa HOM05D002849 ORTHO05D007186 4.9e-28 129.4 77 84.4
MELO3C004787.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.1e-26 124.0 72 81.9
MELO3C012882.2 Cucumis melo HOM05D002849 ORTHO05D007186 2.1e-23 114.0 74 74.3
SalBow6G3808 Salvia bowleyana HOM05D002849 ORTHO05D007186 1.8e-22 110.9 54 92.6
RcHm_v2.0_Chr6g0303951 Rosa chinensis HOM05D002849 ORTHO05D007186 1.2e-18 98.2 47 91.5
Gorai.007G371200 Gossypium raimondii HOM05D002849 ORTHO05D047384 1.6e-18 97.8 70 64.3
MELO3C034170.2 Cucumis melo HOM05D002849 ORTHO05D007186 7.8e-18 95.5 54 79.6
Gohir.D11G341150 Gossypium hirsutum HOM05D002849 ORTHO05D047384 8.7e-17 92.0 75 60.0
MELO3C003855.2 Cucumis melo HOM05D002849 ORTHO05D007186 5.6e-16 89.4 60 71.7
TAR276G0001 Trochodendron aralioides HOM05D002849 ORTHO05D051491 5.4e-11 72.8 51 70.6
BolC5t33314H Brassica oleracea HOM05D002849 ORTHO05D024297 1.6e-10 71.2 71 54.9
AL7G13010 Arabidopsis lyrata HOM05D002849 ORTHO05D007186 1.0e-09 68.6 34 82.4
BcaB01g01492 Brassica carinata HOM05D002849 ORTHO05D027174 6.6e-09 65.9 44 72.7
A05p30360 Brassica napus HOM05D002849 ORTHO05D024297 8.7e-09 65.5 38 81.6
BraA05t21874Z Brassica rapa HOM05D002849 ORTHO05D024297 8.7e-09 65.5 38 81.6


User provided reference genes

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