Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A05p07160 Brassica napus HOM05D006329 ORTHO05D008357 8.9e-205 716.8 399 100.0
BraA05t19681Z Brassica rapa HOM05D006329 ORTHO05D008357 3.8e-203 711.4 399 99.2
BcaB02g09141 Brassica carinata HOM05D006329 ORTHO05D008357 1.6e-190 669.5 404 90.3
Thhalv10016747m.g Eutrema salsugineum HOM05D006329 ORTHO05D008357 1.3e-187 659.8 404 84.9
Sp4g21490 Schrenkiella parvula HOM05D006329 ORTHO05D008357 1.0e-184 650.2 408 86.8
BolC4t22452H Brassica oleracea HOM05D006329 ORTHO05D008357 5.1e-184 647.9 402 92.8
BcaC02g12042 Brassica carinata HOM05D006329 ORTHO05D008357 1.6e-182 642.9 402 92.3
C04p08570 Brassica napus HOM05D006329 ORTHO05D008357 1.6e-182 642.9 402 92.3
AL4G36440 Arabidopsis lyrata HOM05D006329 ORTHO05D008357 3.1e-181 638.6 413 83.8
Carub.0004s2119 Capsella rubella HOM05D006329 ORTHO05D008357 6.7e-176 620.9 411 83.2
AT2G39140 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 1.5e-175 619.8 412 82.0
CARHR133910 Cardamine hirsuta HOM05D006329 ORTHO05D008357 3.7e-174 615.1 413 83.3
THA.LOC104824234 Tarenaya hassleriana HOM05D006329 ORTHO05D008357 9.7e-159 563.9 398 77.6
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 4.4e-143 511.9 398 65.8
Manes.05G201000 Manihot esculenta HOM05D006329 ORTHO05D008357 1.3e-142 510.4 419 64.7
Thecc.10G083200 Theobroma cacao HOM05D006329 ORTHO05D008357 3.1e-141 505.8 378 67.5
Actinidia34805 Actinidia chinensis HOM05D006329 ORTHO05D008357 1.6e-140 503.4 365 69.9
COL.COLO4_17136 Corchorus olitorius HOM05D006329 ORTHO05D008357 1.6e-140 503.4 408 66.2
Cc02_g10940 Coffea canephora HOM05D006329 ORTHO05D008357 3.5e-140 502.3 417 64.7
Ciclev10031516m.g Citrus clementina HOM05D006329 ORTHO05D008357 4.5e-140 501.9 409 67.7
QL08p054507 Quercus lobata HOM05D006329 ORTHO05D008357 7.7e-140 501.1 408 64.5
Potri.008G035500 Populus trichocarpa HOM05D006329 ORTHO05D008357 1.9e-138 496.5 363 69.7
QL08p054383 Quercus lobata HOM05D006329 ORTHO05D008357 3.2e-138 495.7 408 64.0
Nitab4.5_0001450g0040 Nicotiana tabacum HOM05D006329 ORTHO05D008357 7.2e-138 494.6 410 62.7
Nitab4.5_0001659g0150 Nicotiana tabacum HOM05D006329 ORTHO05D008357 1.2e-137 493.8 410 62.2
Duzib114G0755 Durio zibethinus HOM05D006329 ORTHO05D008357 3.6e-137 492.3 406 62.8
Sabra08G0023700 Salix brachista HOM05D006329 ORTHO05D008357 4.7e-137 491.9 370 67.8
Gohir.A10G203300 Gossypium hirsutum HOM05D006329 ORTHO05D008357 6.1e-137 491.5 385 65.2
Gohir.D10G211400 Gossypium hirsutum HOM05D006329 ORTHO05D008357 1.4e-136 490.3 410 62.9
Gorai.011G237100 Gossypium raimondii HOM05D006329 ORTHO05D008357 1.4e-136 490.3 410 62.9
PGR142G3823 Punica granatum HOM05D006329 ORTHO05D008357 6.8e-136 488.0 409 62.8
PGSC0003DMG400007434 Solanum tuberosum HOM05D006329 ORTHO05D008357 1.7e-134 483.4 419 61.3
MD07G1170000 Malus domestica HOM05D006329 ORTHO05D008357 2.2e-134 483.0 408 62.7
Solyc11g008360.3 Solanum lycopersicum HOM05D006329 ORTHO05D008357 3.1e-133 479.2 420 60.0
Nn6g35280 Nelumbo nucifera HOM05D006329 ORTHO05D008357 4.1e-133 478.8 411 66.4
FAN10G3782 Fragaria x ananassa HOM05D006329 ORTHO05D008357 5.4e-133 478.4 381 64.6
Sed0004104 Sechium edule HOM05D006329 ORTHO05D008357 2.7e-132 476.1 417 60.9
Eucgr.G02867 Eucalyptus grandis HOM05D006329 ORTHO05D008357 3.5e-132 475.7 338 74.9
MBI18_g02633_MAGBIO Magnolia biondii HOM05D006329 ORTHO05D008357 5.9e-132 474.9 395 63.5
Hma1.2p1_2894F.1_g329960 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 7.7e-132 474.6 411 64.2
MELO3C019822.2 Cucumis melo HOM05D006329 ORTHO05D008357 3.8e-131 472.2 333 70.0
RcHm_v2.0_Chr1g0362601 Rosa chinensis HOM05D006329 ORTHO05D008357 3.8e-131 472.2 402 61.7
CsaV3_6G036680 Cucumis sativus L. HOM05D006329 ORTHO05D008357 6.5e-131 471.5 333 70.0
FvH4_7g18810 Fragaria vesca HOM05D006329 ORTHO05D008357 1.1e-130 470.7 402 61.7
FAN10G0068 Fragaria x ananassa HOM05D006329 ORTHO05D008357 1.5e-130 470.3 401 61.8
Prupe.2G208900 Prunus persica HOM05D006329 ORTHO05D008357 2.5e-130 469.5 408 61.0
SalBow6G7241 Salvia bowleyana HOM05D006329 ORTHO05D008357 5.5e-130 468.4 408 61.0
FAN06G3910 Fragaria x ananassa HOM05D006329 ORTHO05D008357 7.2e-130 468.0 407 61.2
TAR623G1379 Trochodendron aralioides HOM05D006329 ORTHO05D008357 7.2e-130 468.0 413 62.7
CANSAT56G2601 Cannabis sativa HOM05D006329 ORTHO05D008357 2.1e-129 466.5 343 70.0
Migut.F01702 Erythranthe guttata HOM05D006329 ORTHO05D008357 2.3e-128 463.0 406 59.9
CiPaw.01G268700 Carya illinoinensis HOM05D006329 ORTHO05D008357 3.0e-128 462.6 329 70.8
Aqoxy1G01144 Aquilegia oxysepala HOM05D006329 ORTHO05D008357 4.0e-128 462.2 412 61.2
arahy.Tifrunner.gnm1.ann1.KFTR8M Arachis hypogaea HOM05D006329 ORTHO05D008357 4.0e-128 462.2 423 58.6
Haze_16856 Corylus avellana HOM05D006329 ORTHO05D008357 1.5e-127 460.3 346 71.1
MSTRG.389 Avicennia marina HOM05D006329 ORTHO05D008357 5.7e-127 458.4 405 61.5
Glyma.10G207800 Glycine max HOM05D006329 ORTHO05D008357 1.7e-126 456.8 400 60.8
Cpa.g.sc53.128 Carica papaya HOM05D006329 ORTHO05D008357 2.4e-125 453.0 381 63.0
Phvul.007G098900 Phaseolus vulgaris HOM05D006329 ORTHO05D008357 1.2e-124 450.7 397 60.5
Ca_10544_v3 Cicer arietinum L. HOM05D006329 ORTHO05D008357 2.7e-124 449.5 382 60.5
GSVIVG01016221001 Vitis vinifera HOM05D006329 ORTHO05D008357 1.7e-123 446.8 260 81.2
TPR.G10288 Trifolium pratense HOM05D006329 ORTHO05D008357 1.1e-122 444.1 377 61.3
PSO339G5012 Papaver somniferum HOM05D006329 ORTHO05D008357 1.5e-122 443.7 381 60.1
Peaxi162Scf00145g01311 Petunia axillaris HOM05D006329 ORTHO05D008357 4.2e-122 442.2 373 61.4
vmacro04842 Vaccinium macrocarpon HOM05D006329 ORTHO05D008357 4.2e-122 442.2 424 65.6
Psat6g180040 Pisum sativum HOM05D006329 ORTHO05D008357 7.2e-122 441.4 409 57.2
PSO063G6532 Papaver somniferum HOM05D006329 ORTHO05D008357 9.5e-122 441.0 381 59.6
CDE03G0204 Ceratophyllum demersum HOM05D006329 ORTHO05D008357 3.6e-121 439.1 380 62.4
Sopen11g004170 Solanum pennellii HOM05D006329 ORTHO05D008357 3.6e-121 439.1 260 79.6
Rhsim09G0148200 Rhododendron simsii HOM05D000461 ORTHO05D001829 6.1e-121 438.3 416 62.5
Lj5g0015116 Lotus japonicus HOM05D006329 ORTHO05D008357 1.4e-120 437.2 339 72.6
Oeu013841.1 Olea europaea HOM05D006329 ORTHO05D008357 1.4e-120 437.2 391 63.4
FAN06G0494 Fragaria x ananassa HOM05D006329 ORTHO05D008357 4.0e-120 435.6 407 58.2
ClCG08G007690 Citrullus lanatus HOM05D006329 ORTHO05D008357 8.9e-120 434.5 313 68.4
arahy.Tifrunner.gnm1.ann1.21BGD2 Arachis hypogaea HOM05D006329 ORTHO05D008357 2.6e-119 433.0 413 56.7
EL10Ac6g14260 Beta vulgaris HOM05D006329 ORTHO05D008357 1.3e-118 430.6 260 78.1
Lalb_Chr21g0313671 Lupinus albus HOM05D006329 ORTHO05D008357 2.2e-118 429.9 345 62.6
Medtr1g094190 Medicago truncatula HOM05D006329 ORTHO05D008357 2.2e-118 429.9 377 59.9
HanXRQChr14g0456591 Helianthus annuus HOM05D006329 ORTHO05D008357 5.4e-117 425.2 258 79.5
Zm00001eb004240 Zea mays HOM05D006329 ORTHO05D008357 7.8e-116 421.4 387 59.2
Lsat_1_v5_gn_2_113040 Lactuca sativa HOM05D006329 ORTHO05D008357 1.7e-115 420.2 259 78.0
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.3e-115 419.9 259 77.6
Ah.02g128110 Amaranthus hybridus HOM05D006329 ORTHO05D008357 3.9e-115 419.1 260 76.2
Aa31LG5G20460 Aethionema arabicum HOM05D006329 ORTHO05D008357 2.5e-114 416.4 363 65.6
CAN.G321.64 Capsicum annuum HOM05D006329 ORTHO05D008357 2.1e-113 413.3 252 78.6
ECA238G1295 Erigeron canadensis HOM05D006329 ORTHO05D001676 3.6e-113 412.5 248 78.2
Cfa001679 Carpinus fangiana HOM05D006329 ORTHO05D008357 6.8e-112 408.3 243 79.4
SGA_v2.0_scaffold51G18714 Striga asiatica HOM05D006329 ORTHO05D008357 4.4e-111 405.6 392 56.6
ATR0219G015 Amborella trichopoda HOM05D006329 ORTHO05D008357 5.8e-111 405.2 373 57.4
DCAR_005490 Daucus carota HOM05D006329 ORTHO05D008357 1.7e-110 403.7 384 57.0
EL10Ac4g09587 Beta vulgaris HOM05D006329 ORTHO05D008357 5.4e-109 398.7 274 70.4
CSS0005771 Camellia sinensis var. sinensis HOM05D006329 ORTHO05D008357 1.6e-108 397.1 408 56.4
Hund20700 Selenicereus undatus HOM05D006329 ORTHO05D008357 1.0e-107 394.4 430 53.0
HPP92_026018 Vanilla planifolia HOM05D006329 ORTHO05D008357 1.3e-107 394.0 381 57.2
VMungo0251G3605 Vigna mungo HOM05D006329 ORTHO05D008357 3.1e-104 382.9 325 61.2
HPP92_027741 Vanilla planifolia HOM05D006329 ORTHO05D008357 9.8e-103 377.9 255 74.5
RhsimUnG0185600 Rhododendron simsii HOM05D000461 ORTHO05D001829 2.9e-102 376.3 380 62.9
Dinv31231 Davidia involucrata HOM05D006329 ORTHO05D008357 6.0e-100 368.6 327 62.4
Lj3A938T44 Lonicera japonica HOM05D006329 ORTHO05D008357 5.2e-96 355.5 392 52.3
AUR62002759 Chenopodium quinoa HOM05D006329 ORTHO05D008357 8.9e-96 354.8 225 76.4
Lalb_Chr21g0313541 Lupinus albus HOM05D006329 ORTHO05D008357 4.9e-94 349.0 210 76.2
Os03g0152700 Oryza sativa ssp. japonica HOM05D006329 ORTHO05D008357 1.4e-93 347.4 338 54.7
Mapoly0002s0007 Marchantia polymorpha HOM05D006329 ORTHO05D008357 9.9e-87 324.7 252 63.1
Pp3c7_13640 Physcomitrium patens HOM05D006329 ORTHO05D008357 5.6e-82 308.9 255 60.0
Cfa001678 Carpinus fangiana HOM05D006329 ORTHO05D008357 2.0e-79 300.4 225 73.3
SMO329G0071 Selaginella moellendorffii HOM05D006329 ORTHO05D008357 3.8e-78 296.2 232 61.2
Sc09g0006060 Simmondsia chinensis HOM05D006329 ORTHO05D008357 1.1e-66 258.1 154 77.9
FAN01G2166 Fragaria x ananassa HOM05D006329 ORTHO05D008357 9.6e-66 255.0 152 81.6
HPP92_026744 Vanilla planifolia HOM05D006329 ORTHO05D008357 8.7e-59 231.9 226 56.6
MCO14G528 Micromonas commoda HOM05D006329 ORTHO05D008357 2.1e-57 227.3 254 48.8
CBR_g29624 Chara braunii HOM05D006329 ORTHO05D008357 1.7e-54 217.6 143 71.3
Cre02.g095121 Chlamydomonas reinhardtii HOM05D006329 ORTHO05D008357 3.8e-46 189.9 320 38.4
PRCOL_00004574 Prasinoderma coloniale HOM05D006329 ORTHO05D008357 5.0e-46 189.5 253 44.3
AUR62014125 Chenopodium quinoa HOM05D006329 ORTHO05D008357 6.9e-40 169.1 104 77.9
Hma1.2p1_2894F.1_g329970 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 1.2e-31 141.7 82 81.7
CAN.G176.13 Capsicum annuum HOM05D006329 ORTHO05D033978 3.5e-31 140.2 83 77.1
AT3G43340 Arabidopsis thaliana HOM05D006329 ORTHO05D008357 3.8e-30 136.7 74 90.5
Pp3s196_90 Physcomitrium patens HOM05D006329 ORTHO05D008357 3.1e-24 117.1 247 30.0
Hma1.2p1_2894F.1_g329973 Hydrangea macrophylla HOM05D006329 ORTHO05D008357 1.2e-20 105.1 57 86.0
MCO04G216 Micromonas commoda HOM05D006329 ORTHO05D008357 1.3e-14 85.1 262 29.4
Cre07.g323550 Chlamydomonas reinhardtii HOM05D006329 ORTHO05D008357 2.9e-14 84.0 229 26.6
Glyma.20G182966 Glycine max HOM05D006329 ORTHO05D028485 1.1e-13 82.0 88 52.3
CAN.G184.4 Capsicum annuum HOM05D006329 ORTHO05D028485 2.7e-12 77.4 53 62.3
MCO01G641 Micromonas commoda HOM05D006329 ORTHO05D008357 2.2e-09 67.8 235 28.1
Potri.010G226901 Populus trichocarpa HOM05D006329 ORTHO05D028485 9.2e-08 62.4 51 62.7


User provided reference genes

Program Settings