Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p30600 Brassica napus HOM05D003686 ORTHO05D004322 4.5e-82 308.1 186 100.0
BraA03t12240Z Brassica rapa HOM05D003686 ORTHO05D004322 1.4e-80 303.1 184 100.0
C03p37160 Brassica napus HOM05D003686 ORTHO05D004322 2.0e-66 256.1 190 84.2
BolC3t16013H Brassica oleracea HOM05D003686 ORTHO05D004322 3.4e-66 255.4 190 87.9
Thhalv10028986m.g Eutrema salsugineum HOM05D003686 ORTHO05D004322 1.2e-63 246.9 196 86.2
BcaB05g23688 Brassica carinata HOM05D003686 ORTHO05D004322 6.7e-62 241.1 196 83.2
BcaB05g23689 Brassica carinata HOM05D003686 ORTHO05D004322 6.7e-62 241.1 196 83.2
BcaB01g01979 Brassica carinata HOM05D003686 ORTHO05D004322 2.5e-61 239.2 190 78.9
BcaC01g06704 Brassica carinata HOM05D003686 ORTHO05D004322 5.7e-61 238.0 192 84.9
BolC9t53184H Brassica oleracea HOM05D003686 ORTHO05D004322 8.2e-60 234.2 188 78.7
Sp6g03160 Schrenkiella parvula HOM05D003686 ORTHO05D004322 8.2e-60 234.2 193 82.9
BolC2t10013H Brassica oleracea HOM05D003686 ORTHO05D004322 1.8e-59 233.0 196 78.1
A09p02440 Brassica napus HOM05D003686 ORTHO05D004322 2.0e-58 229.6 188 77.7
BraA09t35891Z Brassica rapa HOM05D003686 ORTHO05D004322 2.0e-58 229.6 188 77.7
BcaC03g16209 Brassica carinata HOM05D003686 ORTHO05D004322 6.5e-57 224.6 195 80.5
CARHR251560 Cardamine hirsuta HOM05D003686 ORTHO05D004322 1.2e-55 220.3 196 75.0
AT4G03120 Arabidopsis thaliana HOM05D003686 ORTHO05D004322 1.4e-54 216.9 209 75.6
A02p25120 Brassica napus HOM05D003686 ORTHO05D004322 1.5e-50 203.4 182 77.5
C09p02540 Brassica napus HOM05D003686 ORTHO05D004322 5.0e-49 198.4 173 76.9
BcaB01g02510 Brassica carinata HOM05D003686 ORTHO05D004322 2.5e-48 196.1 192 77.1
Atru.chr5.1287 Acer truncatum HOM05D003686 ORTHO05D004322 1.4e-46 190.3 204 62.7
FAN20G0133 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.0e-45 186.4 203 59.1
FAN27G0391 Fragaria x ananassa HOM05D003686 ORTHO05D004322 2.0e-45 186.4 203 59.1
Eucgr.B02749 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.7e-44 183.3 203 70.0
Carub.0006s3393 Capsella rubella HOM05D003686 ORTHO05D004322 2.2e-44 183.0 196 69.9
Gohir.D08G053600 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.8e-44 182.6 217 57.1
Gorai.004G053600 Gossypium raimondii HOM05D003686 ORTHO05D004322 4.8e-44 181.8 219 57.1
FAN15G3346 Fragaria x ananassa HOM05D003686 ORTHO05D004322 6.3e-44 181.4 206 58.3
RcHm_v2.0_Chr6g0292481 Rosa chinensis HOM05D003686 ORTHO05D004322 6.3e-44 181.4 204 53.9
Potri.003G058400 Populus trichocarpa HOM05D003686 ORTHO05D004322 8.2e-44 181.0 204 59.3
BraA02t07500Z Brassica rapa HOM05D003686 ORTHO05D004322 1.1e-43 180.6 109 86.2
TWI14G0352 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 1.1e-43 180.6 203 60.6
Eucgr.A00286 Eucalyptus grandis HOM05D003686 ORTHO05D004322 1.4e-43 180.3 209 55.0
FvH4_2g24650 Fragaria vesca HOM05D003686 ORTHO05D004322 2.4e-43 179.5 203 58.1
THA.LOC104826011 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 3.1e-43 179.1 107 85.0
Gohir.A08G043900 Gossypium hirsutum HOM05D003686 ORTHO05D004322 5.3e-43 178.3 219 55.7
Sed0010038 Sechium edule HOM05D003686 ORTHO05D004322 2.6e-42 176.0 200 60.5
Manes.05G068800 Manihot esculenta HOM05D003686 ORTHO05D004322 4.5e-42 175.3 187 65.8
COL.COLO4_08036 Corchorus olitorius HOM05D003686 ORTHO05D004322 1.7e-41 173.3 209 58.4
TWI23G0547 Tripterygium wilfordii HOM05D003686 ORTHO05D004322 2.2e-41 172.9 200 65.0
Gohir.D11G123300 Gossypium hirsutum HOM05D003686 ORTHO05D004322 2.9e-41 172.6 207 53.6
Haze_04804 Corylus avellana HOM05D003686 ORTHO05D004322 3.8e-41 172.2 204 51.5
Gohir.A11G118400 Gossypium hirsutum HOM05D003686 ORTHO05D004322 5.0e-41 171.8 210 65.2
Gorai.007G132200 Gossypium raimondii HOM05D003686 ORTHO05D004322 6.5e-41 171.4 210 65.2
Ciclev10022350m.g Citrus clementina HOM05D003686 ORTHO05D004322 8.5e-41 171.0 201 66.2
QL07p015848 Quercus lobata HOM05D003686 ORTHO05D004322 8.5e-41 171.0 207 49.3
Duzib133G0241 Durio zibethinus HOM05D003686 ORTHO05D004322 3.2e-40 169.1 209 56.5
Prupe.8G251800 Prunus persica HOM05D003686 ORTHO05D004322 3.2e-40 169.1 116 75.0
TAR636G2878 Trochodendron aralioides HOM05D003686 ORTHO05D004322 3.2e-40 169.1 207 49.8
THA.LOC104817532 Tarenaya hassleriana HOM05D003686 ORTHO05D004322 7.2e-40 167.9 118 67.8
Thecc.10G102800 Theobroma cacao HOM05D003686 ORTHO05D004322 7.2e-40 167.9 107 78.5
GSVIVG01011011001 Vitis vinifera HOM05D003686 ORTHO05D004322 1.2e-39 167.2 129 68.2
Glyma.10G021900 Glycine max HOM05D003686 ORTHO05D004322 1.6e-39 166.8 209 50.7
QL93p0358_0011 Quercus lobata HOM05D003686 ORTHO05D004322 1.6e-39 166.8 205 53.2
Manes.01G213100 Manihot esculenta HOM05D003686 ORTHO05D004322 2.1e-39 166.4 210 53.8
CANSAT78G2257 Cannabis sativa HOM05D003686 ORTHO05D004322 2.7e-39 166.0 214 57.0
TAR362G1277 Trochodendron aralioides HOM05D003686 ORTHO05D004322 3.6e-39 165.6 201 52.2
CiPaw.07G099200 Carya illinoinensis HOM05D003686 ORTHO05D004322 4.7e-39 165.2 203 52.7
MD03G1275200 Malus domestica HOM05D003686 ORTHO05D004322 6.1e-39 164.9 114 74.6
Nn1g08910 Nelumbo nucifera HOM05D003686 ORTHO05D004322 1.0e-38 164.1 191 52.4
Actinidia00703 Actinidia chinensis HOM05D003686 ORTHO05D004322 1.8e-38 163.3 208 60.6
PGR031G1643 Punica granatum HOM05D003686 ORTHO05D004322 1.8e-38 163.3 183 53.6
Cfa010467 Carpinus fangiana HOM05D003686 ORTHO05D004322 2.3e-38 162.9 109 74.3
CDE11G0890 Ceratophyllum demersum HOM05D003686 ORTHO05D004322 2.3e-38 162.9 101 79.2
CsaV3_7G028310 Cucumis sativus L. HOM05D003686 ORTHO05D004322 3.0e-38 162.5 198 60.1
MSTRG.21821 Avicennia marina HOM05D003686 ORTHO05D004322 4.0e-38 162.2 121 66.9
Phvul.007G166600 Phaseolus vulgaris HOM05D003686 ORTHO05D004322 4.0e-38 162.2 208 62.0
ClCG09G006530 Citrullus lanatus HOM05D003686 ORTHO05D004322 6.7e-38 161.4 205 59.5
Glyma.02G152300 Glycine max HOM05D003686 ORTHO05D004322 6.7e-38 161.4 209 56.9
QL04p005272 Quercus lobata HOM05D003686 ORTHO05D004322 8.8e-38 161.0 206 47.1
MELO3C015891.2 Cucumis melo HOM05D003686 ORTHO05D004322 2.0e-37 159.8 198 60.6
Aqoxy2G03146 Aquilegia oxysepala HOM05D003686 ORTHO05D004322 2.6e-37 159.5 196 51.5
Os02g0266100 Oryza sativa ssp. japonica HOM05D003686 ORTHO05D004322 2.6e-37 159.5 123 69.1
TPR.G15798 Trifolium pratense HOM05D003686 ORTHO05D004322 2.6e-37 159.5 206 55.3
Cpa.g.sc9.157 Carica papaya HOM05D003686 ORTHO05D004322 4.4e-37 158.7 223 47.1
Lalb_Chr02g0143061 Lupinus albus HOM05D003686 ORTHO05D004322 4.4e-37 158.7 209 52.6
MD11G1297300 Malus domestica HOM05D003686 ORTHO05D004322 4.4e-37 158.7 104 75.0
VMungo0720G0802 Vigna mungo HOM05D003686 ORTHO05D004322 7.5e-37 157.9 207 53.6
TAR365G0683 Trochodendron aralioides HOM05D003686 ORTHO05D004322 9.7e-37 157.5 129 65.1
CiPaw.08G100800 Carya illinoinensis HOM05D003686 ORTHO05D004322 1.3e-36 157.1 204 57.4
Lj1g0025208 Lotus japonicus HOM05D003686 ORTHO05D004322 1.3e-36 157.1 194 50.5
Lalb_Chr06g0163281 Lupinus albus HOM05D003686 ORTHO05D004322 1.3e-36 157.1 212 53.3
Rhsim13G0017700 Rhododendron simsii HOM05D003686 ORTHO05D004322 1.7e-36 156.8 222 46.4
Duzib138G0197 Durio zibethinus HOM05D003686 ORTHO05D004322 2.8e-36 156.0 208 57.2
Migut.N00130 Erythranthe guttata HOM05D003686 ORTHO05D004322 2.8e-36 156.0 199 50.3
Solyc01g067830.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 3.7e-36 155.6 185 50.3
Ca_10377_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 4.8e-36 155.2 202 50.0
Ca_29655_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 4.8e-36 155.2 202 50.0
Medtr7g107640 Medicago truncatula HOM05D003686 ORTHO05D004322 4.8e-36 155.2 123 65.9
Zm00001eb203990 Zea mays HOM05D003686 ORTHO05D004322 4.8e-36 155.2 111 75.7
Ca_09109_v3 Cicer arietinum L. HOM05D003686 ORTHO05D004322 8.3e-36 154.5 123 69.9
arahy.Tifrunner.gnm1.ann1.MV1AMG Arachis hypogaea HOM05D003686 ORTHO05D004322 1.8e-35 153.3 210 57.6
ECA248G2178 Erigeron canadensis HOM05D003686 ORTHO05D004322 1.8e-35 153.3 121 67.8
HanXRQChr01g0002781 Helianthus annuus HOM05D003686 ORTHO05D004322 3.1e-35 152.5 224 56.2
Lsat_1_v5_gn_5_188760 Lactuca sativa HOM05D003686 ORTHO05D004322 3.1e-35 152.5 215 53.5
Psat3g024960 Pisum sativum HOM05D003686 ORTHO05D004322 3.1e-35 152.5 106 72.6
Sopen01g029780 Solanum pennellii HOM05D003686 ORTHO05D004322 3.1e-35 152.5 185 57.8
ECA247G2101 Erigeron canadensis HOM05D003686 ORTHO05D004322 5.3e-35 151.8 107 73.8
PSO801G0146 Papaver somniferum HOM05D003686 ORTHO05D004322 9.1e-35 151.0 123 67.5
Sed0008045 Sechium edule HOM05D003686 ORTHO05D004322 9.1e-35 151.0 200 64.5
Medtr1g088990 Medicago truncatula HOM05D003686 ORTHO05D004322 1.6e-34 150.2 107 72.9
TPR.G18851 Trifolium pratense HOM05D004763 ORTHO05D007492 1.6e-34 150.2 98 76.5
Dinv11293 Davidia involucrata HOM05D003686 ORTHO05D004322 3.5e-34 149.1 206 60.2
Peaxi162Scf01364g00015 Petunia axillaris HOM05D003686 ORTHO05D004322 3.5e-34 149.1 102 71.6
ATR0706G002 Amborella trichopoda HOM05D003686 ORTHO05D004322 4.5e-34 148.7 200 48.5
DCAR_007018 Daucus carota HOM05D003686 ORTHO05D004322 5.9e-34 148.3 222 48.2
Hma1.2p1_0643F.1_g194700 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 7.7e-34 147.9 114 67.5
Hma1.2p1_0643F.1_g194711 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 7.7e-34 147.9 114 67.5
Sc25g0004660 Simmondsia chinensis HOM05D003686 ORTHO05D004322 7.7e-34 147.9 196 57.1
Dinv11297 Davidia involucrata HOM05D003686 ORTHO05D004322 1.0e-33 147.5 206 59.7
CAN.G185.6 Capsicum annuum HOM05D003686 ORTHO05D004322 1.3e-33 147.1 197 53.3
PGSC0003DMG400022854 Solanum tuberosum HOM05D003686 ORTHO05D004322 1.7e-33 146.7 182 59.3
Hma1.2p1_0643F.1_g194695 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.9e-33 146.0 101 70.3
Hma1.2p1_0643F.1_g194710 Hydrangea macrophylla HOM05D003686 ORTHO05D004322 2.9e-33 146.0 101 70.3
FAN20G1534 Fragaria x ananassa HOM05D003686 ORTHO05D004322 3.8e-33 145.6 186 55.4
Lj5g0005016 Lotus japonicus HOM05D003686 ORTHO05D004322 5.0e-33 145.2 212 58.0
HanXRQChr11g0330151 Helianthus annuus HOM05D003686 ORTHO05D004322 1.5e-32 143.7 202 48.5
Mapoly0103s0046 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.9e-32 143.3 104 71.2
vmacro17192 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 9.4e-32 141.0 218 44.5
Pp3c12_26180 Physcomitrium patens HOM05D003686 ORTHO05D004322 1.6e-31 140.2 116 65.5
Sabra03G0032800 Salix brachista HOM05D003686 ORTHO05D004322 1.6e-31 140.2 187 49.7
Solyc06g008860.3 Solanum lycopersicum HOM05D003686 ORTHO05D004322 2.1e-31 139.8 220 48.2
COL.COLO4_34092 Corchorus olitorius HOM05D003686 ORTHO05D004322 4.7e-31 138.7 107 68.2
FAN24G2968 Fragaria x ananassa HOM05D003686 ORTHO05D004322 4.7e-31 138.7 186 51.6
PSO339G4974 Papaver somniferum HOM05D003686 ORTHO05D004322 4.7e-31 138.7 204 56.9
Pp3c4_170 Physcomitrium patens HOM05D003686 ORTHO05D004322 4.7e-31 138.7 116 65.5
Sopen06g003610 Solanum pennellii HOM05D003686 ORTHO05D004322 6.1e-31 138.3 220 48.2
PGSC0003DMG400021997 Solanum tuberosum HOM05D003686 ORTHO05D004322 1.4e-30 137.1 207 50.2
Nitab4.5_0000295g0050 Nicotiana tabacum HOM05D003686 ORTHO05D004322 1.8e-30 136.7 203 50.2
Nitab4.5_0004238g0080 Nicotiana tabacum HOM05D003686 ORTHO05D004322 2.3e-30 136.3 203 49.8
DCAR_012430 Daucus carota HOM05D003686 ORTHO05D004322 3.0e-30 136.0 194 45.9
Ah.12g061550 Amaranthus hybridus HOM05D003686 ORTHO05D004322 4.0e-30 135.6 147 61.2
AUR62029649 Chenopodium quinoa HOM05D003686 ORTHO05D004322 2.6e-29 132.9 103 69.9
CAN.G1006.23 Capsicum annuum HOM05D003686 ORTHO05D004322 3.4e-29 132.5 118 63.6
CSS0048633 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 7.5e-29 131.3 105 66.7
Migut.N02118 Erythranthe guttata HOM05D003686 ORTHO05D004322 9.8e-29 131.0 104 66.3
Migut.O00643 Erythranthe guttata HOM05D003686 ORTHO05D004322 9.8e-29 131.0 104 66.3
arahy.Tifrunner.gnm1.ann1.TAZ1K7 Arachis hypogaea HOM05D003686 ORTHO05D004322 1.7e-28 130.2 240 49.6
Mapoly0087s0074 Marchantia polymorpha HOM05D003686 ORTHO05D004322 1.7e-28 130.2 184 47.8
AUR62025901 Chenopodium quinoa HOM05D003686 ORTHO05D004322 2.2e-28 129.8 203 48.8
AUR62025902 Chenopodium quinoa HOM05D003686 ORTHO05D004322 2.2e-28 129.8 203 48.8
SGA_v2.0_scaffold36G14363 Striga asiatica HOM05D003686 ORTHO05D004322 6.3e-28 128.3 117 63.2
EL10Ac2g03326 Beta vulgaris HOM05D003686 ORTHO05D004322 1.1e-27 127.5 71 84.5
AagrBONN_evm.TU.Sc2ySwM_228.930 Anthoceros agrestis HOM05D003686 ORTHO05D004322 1.4e-27 127.1 103 67.0
Lj2P1184T34 Lonicera japonica HOM05D003686 ORTHO05D004322 2.4e-27 126.3 93 69.9
MSTRG.12592 Avicennia marina HOM05D003686 ORTHO05D004322 2.7e-26 122.9 88 69.3
HPP92_021461 Vanilla planifolia HOM05D003686 ORTHO05D004322 2.7e-26 122.9 106 62.3
Nitab4.5_0001149g0030 Nicotiana tabacum HOM05D003686 ORTHO05D004322 4.5e-26 122.1 106 62.3
Nitab4.5_0001624g0040 Nicotiana tabacum HOM05D003686 ORTHO05D004322 4.5e-26 122.1 106 62.3
SGA_v2.0_scaffold172G39059 Striga asiatica HOM05D003686 ORTHO05D004322 7.7e-26 121.3 207 43.5
Oeu022800.1 Olea europaea HOM05D003686 ORTHO05D004322 1.7e-25 120.2 102 62.7
Oeu022802.1 Olea europaea HOM05D003686 ORTHO05D004322 1.7e-25 120.2 102 62.7
unitig_61.g26148 Utricularia gibba HOM05D003686 ORTHO05D004322 1.7e-25 120.2 176 46.6
Lj3A810T51 Lonicera japonica HOM05D003686 ORTHO05D004322 2.9e-25 119.4 88 69.3
SalBow6G6913 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.1e-24 117.5 104 61.5
SalBow8G5349 Salvia bowleyana HOM05D003686 ORTHO05D004322 1.1e-24 117.5 104 61.5
Psat3g182400 Pisum sativum HOM05D003686 ORTHO05D004322 1.5e-24 117.1 62 85.5
Nn2g12370 Nelumbo nucifera HOM05D003686 ORTHO05D004322 2.5e-24 116.3 186 44.1
Cc01_g20160 Coffea canephora HOM05D003686 ORTHO05D004322 5.5e-24 115.2 239 38.1
SGA_v2.0_scaffold89G27564 Striga asiatica HOM05D003686 ORTHO05D004322 5.5e-24 115.2 119 52.9
Psat0s3642g0040 Pisum sativum HOM05D000068 ORTHO05D025728 9.5e-24 114.4 62 87.1
CSS0007511 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.2e-23 114.0 100 62.0
CSS0037271 Camellia sinensis var. sinensis HOM05D003686 ORTHO05D004322 1.2e-23 114.0 100 62.0
HPP92_021468 Vanilla planifolia HOM05D003686 ORTHO05D004322 2.8e-23 112.8 56 94.6
Psat6g168000 Pisum sativum HOM05D003686 ORTHO05D004322 1.4e-22 110.5 188 50.5
vmacro02511 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 2.3e-22 109.8 71 78.9
C02p39870 Brassica napus HOM05D003686 ORTHO05D004322 3.7e-20 102.4 123 69.9
Hund24902 Selenicereus undatus HOM05D003686 ORTHO05D004322 2.7e-18 96.3 102 59.8
unitig_22.g6331 Utricularia gibba HOM05D003686 ORTHO05D004322 1.0e-17 94.4 121 45.5
Peaxi162Scf00936g00218 Petunia axillaris HOM05D003686 ORTHO05D004322 3.9e-17 92.4 108 55.6
Peaxi162Scf01067g00002 Petunia axillaris HOM05D003686 ORTHO05D004322 9.5e-16 87.8 93 54.8
Aa31LG5G2650 Aethionema arabicum HOM05D003686 ORTHO05D004322 1.2e-15 87.4 119 48.7
Duzib211G0369 Durio zibethinus HOM05D003686 ORTHO05D004322 2.8e-15 86.3 77 63.6
Cre09.g401300 Chlamydomonas reinhardtii HOM05D003686 ORTHO05D004322 6.8e-14 81.6 41 82.9
Lj5g0025755 Lotus japonicus HOM05D003686 ORTHO05D009933 2.9e-12 76.3 66 62.1
vmacro14959 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 1.5e-08 63.9 206 31.1
PSO384G1563 Papaver somniferum HOM05D003686 ORTHO05D004322 2.1e-07 60.1 72 51.4
PSO384G1591 Papaver somniferum HOM05D000185 ORTHO05D000105 2.1e-07 60.1 72 51.4
PSO384G1681 Papaver somniferum HOM05D003686 ORTHO05D004322 2.1e-07 60.1 72 51.4
PRCOL_00005459 Prasinoderma coloniale HOM05D003686 ORTHO05D004322 3.6e-07 59.3 94 41.5
PSO384G1636 Papaver somniferum HOM05D000185 ORTHO05D000105 6.2e-07 58.5 73 53.4
QL07p015856 Quercus lobata HOM05D003686 ORTHO05D004322 6.2e-07 58.5 65 50.8
vmacro14957 Vaccinium macrocarpon HOM05D003686 ORTHO05D004322 8.0e-07 58.2 187 39.6
QL93p0358_0018 Quercus lobata HOM05D003686 ORTHO05D004322 1.1e-06 57.8 65 50.8


User provided reference genes

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