PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 31.1
Description: cell.organisation

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_5	17	CH_aly_48	6	13	0.0000107143
Arabidopsis thaliana	2	17	CH_ath_77	10	13	0.000000000000566216
Arabidopsis thaliana	4	17	CH_ath_103	9	13	0.000000000118233
Arabidopsis thaliana	5	17	CH_ath_322	6	13	0.000163295
Arabidopsis thaliana	2	18	CH_ath_39	10	13	0.000000000000566216
Arabidopsis thaliana	4	18	CH_ath_52	10	27	0.0000000143532
Brassica rapa	A02	17	CH_bra_108	6	7	0.0000017931
Brassica rapa	A06	17	CH_bra_85	6	6	0.000000259175
Capsella rubella	scaffold_5	17	CH_cru_41	10	11	0.000000000000115607
Capsella rubella	scaffold_6	17	CH_cru_89	7	7	0.00000000360144
Capsella rubella	scaffold_5	18	CH_cru_21	10	11	0.000000000000115607
Capsella rubella	scaffold_6	18	CH_cru_68	10	63	0.000680524
Citrus sinensis	scaffold00014	17	CH_csi_233	4	4	0.000930737
Citrus sinensis	scaffold00087	17	CH_csi_188	5	7	0.000288198
Citrus sinensis	scaffold00132	17	CH_csi_234	4	4	0.000930737
Eucalyptus grandis	scaffold_11	17	CH_egr_49	22	33	6.66668e-27
Eucalyptus grandis	scaffold_11	17	CH_egr_318	9	12	0.00000000094803
Eucalyptus grandis	scaffold_14	17	CH_egr_71	17	21	1.73733e-22
Eucalyptus grandis	scaffold_3	17	CH_egr_157	18	49	0.00000000000000365786
Eucalyptus grandis	scaffold_3	17	CH_egr_35	26	44	2.43259e-30
Eucalyptus grandis	scaffold_3	17	CH_egr_268	17	69	0.0000000000801528
Eucalyptus grandis	scaffold_3	17	CH_egr_414	9	16	0.0000000463344
Eucalyptus grandis	scaffold_4	17	CH_egr_285	9	11	0.00000000024071
Eucalyptus grandis	scaffold_4	17	CH_egr_61	24	55	1.72647e-23
Eucalyptus grandis	scaffold_4	17	CH_egr_686	7	14	0.0000476228
Eucalyptus grandis	scaffold_5	17	CH_egr_286	9	11	0.00000000024071
Eucalyptus grandis	scaffold_6	17	CH_egr_592	6	7	0.00000620276
Eucalyptus grandis	scaffold_8	17	CH_egr_773	5	6	0.000309594
Eucalyptus grandis	scaffold_8	17	CH_egr_593	6	7	0.00000620276
Eucalyptus grandis	scaffold_11	18	CH_egr_47	22	33	6.66668e-27
Eucalyptus grandis	scaffold_14	18	CH_egr_64	17	21	1.73733e-22
Eucalyptus grandis	scaffold_3	18	CH_egr_6	61	211	3.95983e-52
Eucalyptus grandis	scaffold_4	18	CH_egr_58	24	55	1.72647e-23
Eucalyptus grandis	scaffold_5	18	CH_egr_174	20	120	0.00000000086514
Glycine max	Gm09	17	CH_gma_87	10	15	0.0000000000847313
Glycine max	Gm13	17	CH_gma_488	5	7	0.000839229
Glycine max	Gm15	17	CH_gma_405	5	6	0.000242808
Glycine max	Gm09	18	CH_gma_38	10	15	0.0000000000847313
Gossypium raimondii	Chr04	17	CH_gra_94	9	11	0.000000000150187
Gossypium raimondii	Chr09	17	CH_gra_163	6	6	0.000000675446
Gossypium raimondii	Chr11	17	CH_gra_3	30	34	1.74756e-45
Gossypium raimondii	Chr12	17	CH_gra_8	26	35	4.22393e-35
Gossypium raimondii	Chr11	18	CH_gra_3	31	35	3.05416e-47
Gossypium raimondii	Chr12	18	CH_gra_11	26	35	4.22393e-35
Malus domestica	10	17	CH_mdo_266	4	4	0.00035941
Oryza sativa ssp. japonica	2	17	CH_osa_123	8	17	0.0000000127949
Oryza sativa ssp. japonica	3	17	CH_osa_308	5	8	0.0000740865
Populus trichocarpa	Chr08	17	CH_ptr_348	6	9	0.0000527594
Populus trichocarpa	Chr11	17	CH_ptr_23	23	51	1.71629e-23
Populus trichocarpa	Chr19	17	CH_ptr_347	6	9	0.0000527594
Populus trichocarpa	Chr19	17	CH_ptr_114	12	26	0.0000000000796627
Populus trichocarpa	Chr11	18	CH_ptr_22	23	51	1.71629e-23
Populus trichocarpa	Chr19	18	CH_ptr_67	12	26	0.0000000000796627
Prunus persica	scaffold_12	17	CH_ppe_57	13	22	0.0000000000000096332
Prunus persica	scaffold_3	17	CH_ppe_99	9	11	0.0000000000319057
Prunus persica	scaffold_3	17	CH_ppe_345	5	6	0.0000926407
Prunus persica	scaffold_3	17	CH_ppe_308	9	35	0.0000302775
Prunus persica	scaffold_4	17	CH_ppe_110	9	12	0.000000000126024
Prunus persica	scaffold_4	17	CH_ppe_149	8	11	0.00000000679463
Prunus persica	scaffold_12	18	CH_ppe_43	13	22	0.0000000000000096332
Prunus persica	scaffold_3	18	CH_ppe_63	10	19	0.000000000680441
Prunus persica	scaffold_4	18	CH_ppe_69	10	25	0.0000000223117
Ricinus communis	29706	17	CH_rco_87	7	9	0.0000000285052
Solanum lycopersicum	ch01	17	CH_sly_426	9	44	0.000409712
Vitis vinifera	chr12	17	CH_vvi_50	15	24	7.24174e-17
Vitis vinifera	chr13	17	CH_vvi_337	6	10	0.000124934
Vitis vinifera	chr14	17	CH_vvi_242	6	7	0.00000435065
Vitis vinifera	chr5	17	CH_vvi_77	14	29	0.00000000000023641
Vitis vinifera	chr9	17	CH_vvi_123	8	9	0.00000000158411
Vitis vinifera	chrUn	17	CH_vvi_275	6	8	0.0000171507
Vitis vinifera	chrUn	17	CH_vvi_153	9	16	0.0000000308292
Vitis vinifera	chr12	18	CH_vvi_38	15	24	7.24174e-17
Vitis vinifera	chr5	18	CH_vvi_47	14	29	0.00000000000023641
Vitis vinifera	chr9	18	CH_vvi_101	10	47	0.000147449
Vitis vinifera	chrUn	18	CH_vvi_99	15	125	0.00010372
Zea mays	5	17	CH_zma_234	5	7	0.000318401

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V