PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 30.2.25
Description: signalling.receptor kinases.wall associated kinase

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	17	CH_aly_30	4	14	0.000000373289
Arabidopsis thaliana	1	17	CH_ath_56	6	6	0.00000000000000297752
Arabidopsis thaliana	1	17	CH_ath_70	6	8	0.0000000000000832848
Brassica rapa	A06	17	CH_bra_75	4	5	0.0000000755006
Brassica rapa	A08	17	CH_bra_165	3	3	0.0000202494
Capsella rubella	scaffold_1	17	CH_cru_199	3	3	0.0000134572
Capsella rubella	scaffold_1	17	CH_cru_38	6	7	0.0000000000000304319
Capsella rubella	scaffold_2	17	CH_cru_198	3	3	0.0000134572
Citrus sinensis	scaffold00080	17	CH_csi_106	3	3	0.00000337479
Citrus sinensis	scaffold00124	17	CH_csi_136	3	5	0.0000337204
Eucalyptus grandis	scaffold_11	17	CH_egr_54	12	17	7.43281e-25
Eucalyptus grandis	scaffold_3	17	CH_egr_137	11	39	1.06491e-16
Eucalyptus grandis	scaffold_3	17	CH_egr_775	3	3	0.000320672
Eucalyptus grandis	scaffold_6	17	CH_egr_172	12	80	0.0000000000000202955
Eucalyptus grandis	scaffold_8	17	CH_egr_560	4	5	0.00000328478
Eucalyptus grandis	scaffold_11	18	CH_egr_53	12	17	7.43281e-25
Eucalyptus grandis	scaffold_3	18	CH_egr_110	11	39	1.06491e-16
Eucalyptus grandis	scaffold_6	18	CH_egr_123	12	80	0.0000000000000202955
Glycine max	Gm14	17	CH_gma_144	4	9	0.0000000350616
Gossypium raimondii	Chr05	17	CH_gra_19	9	11	3.67353e-23
Gossypium raimondii	Chr09	17	CH_gra_227	3	3	0.0000141237
Malus domestica	1	17	CH_mdo_136	5	61	0.00000667679
Malus domestica	10	17	CH_mdo_103	4	11	0.000000859945
Malus domestica	17	17	CH_mdo_261	3	8	0.00031638
Manihot esculenta	scaffold10305	17	CH_mes_93	3	3	0.00000164241
Populus trichocarpa	Chr01	17	CH_ptr_14	14	29	2.31267e-32
Populus trichocarpa	Chr09	17	CH_ptr_425	4	28	0.000395436
Populus trichocarpa	Chr01	18	CH_ptr_12	14	29	2.31267e-32
Prunus persica	scaffold_3	17	CH_ppe_11	14	27	4.52998e-30
Prunus persica	scaffold_5	17	CH_ppe_196	5	13	0.000000148826
Prunus persica	scaffold_3	18	CH_ppe_11	14	27	4.52998e-30
Solanum lycopersicum	ch09	17	CH_sly_207	5	47	0.000000772973
Vitis vinifera	chr10	17	CH_vvi_44	8	15	1.45961e-17
Vitis vinifera	chr3	17	CH_vvi_164	4	5	0.0000000584227
Zea mays	2	17	CH_zma_251	5	78	0.000482551
Zea mays	6	17	CH_zma_79	4	5	0.00000014075

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V