Functional clusters
Information
- Type
- Mapman term
- Identifier
- 29.5.9
- Description
- protein.degradation.AAA type
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Arabidopsis thaliana | 3 | 17 | CH_ath_39 | 8 | 11 | 2.95774e-17 |
Arabidopsis thaliana | 5 | 17 | CH_ath_163 | 4 | 4 | 0.0000000942598 |
Brassica rapa | A06 | 17 | CH_bra_42 | 5 | 5 | 0.00000000238649 |
Capsella rubella | scaffold_3 | 17 | CH_cru_273 | 3 | 3 | 0.000330487 |
Capsella rubella | scaffold_5 | 17 | CH_cru_274 | 3 | 3 | 0.000330487 |
Capsella rubella | scaffold_5 | 17 | CH_cru_17 | 9 | 11 | 1.81653e-18 |
Capsella rubella | scaffold_6 | 17 | CH_cru_151 | 4 | 4 | 0.000000744169 |
Capsella rubella | scaffold_5 | 18 | CH_cru_37 | 10 | 162 | 0.000000130891 |
Citrus sinensis | scaffold00015 | 17 | CH_csi_80 | 4 | 4 | 0.000000852073 |
Citrus sinensis | scaffold00017 | 17 | CH_csi_194 | 3 | 3 | 0.00033165 |
Citrus sinensis | scaffold00287 | 17 | CH_csi_20 | 6 | 6 | 0.00000000000524758 |
Citrus sinensis | scaffold00326 | 17 | CH_csi_195 | 3 | 3 | 0.00033165 |
Eucalyptus grandis | scaffold_10 | 17 | CH_egr_343 | 5 | 5 | 0.00000000227056 |
Eucalyptus grandis | scaffold_10 | 17 | CH_egr_34 | 14 | 17 | 1.27119e-30 |
Eucalyptus grandis | scaffold_3 | 17 | CH_egr_65 | 11 | 14 | 8.21606e-23 |
Eucalyptus grandis | scaffold_5 | 17 | CH_egr_582 | 4 | 5 | 0.00000502006 |
Eucalyptus grandis | scaffold_9 | 17 | CH_egr_167 | 7 | 7 | 0.0000000000000111239 |
Eucalyptus grandis | scaffold_10 | 18 | CH_egr_37 | 14 | 17 | 1.27119e-30 |
Eucalyptus grandis | scaffold_3 | 18 | CH_egr_60 | 11 | 14 | 8.21606e-23 |
Eucalyptus grandis | scaffold_5 | 19 | CH_egr_6 | 3 | 4 | 0.000203587 |
Glycine max | Gm11 | 17 | CH_gma_450 | 3 | 3 | 0.000509421 |
Glycine max | Gm19 | 17 | CH_gma_449 | 3 | 3 | 0.000509421 |
Gossypium raimondii | Chr01 | 17 | CH_gra_240 | 4 | 8 | 0.0000246669 |
Malus domestica | 11 | 17 | CH_mdo_216 | 3 | 3 | 0.000146248 |
Malus domestica | 9 | 17 | CH_mdo_105 | 4 | 5 | 0.00000106202 |
Manihot esculenta | scaffold03741 | 17 | CH_mes_169 | 3 | 3 | 0.000168909 |
Manihot esculenta | scaffold07520 | 17 | CH_mes_118 | 4 | 6 | 0.00000482584 |
Oryza sativa ssp. japonica | 12 | 17 | CH_osa_205 | 6 | 53 | 0.00000199085 |
Oryza sativa ssp. japonica | 12 | 17 | CH_osa_379 | 3 | 4 | 0.000305835 |
Oryza sativa ssp. japonica | 7 | 17 | CH_osa_309 | 3 | 3 | 0.0000765219 |
Oryza sativa ssp. japonica | 7 | 17 | CH_osa_217 | 4 | 7 | 0.00000287245 |
Populus trichocarpa | Chr07 | 17 | CH_ptr_162 | 6 | 14 | 0.0000000104963 |
Prunus persica | scaffold_3 | 17 | CH_ppe_86 | 6 | 6 | 0.00000000000297664 |
Prunus persica | scaffold_6 | 17 | CH_ppe_388 | 3 | 3 | 0.000309534 |
Prunus persica | scaffold_7 | 17 | CH_ppe_26 | 10 | 12 | 3.13484e-21 |
Prunus persica | scaffold_7 | 18 | CH_ppe_24 | 10 | 12 | 3.13484e-21 |
Prunus persica | scaffold_1 | 19 | CH_ppe_3 | 3 | 4 | 0.000332011 |
Ricinus communis | 29634 | 17 | CH_rco_78 | 5 | 7 | 0.0000000109448 |
Ricinus communis | 29929 | 17 | CH_rco_204 | 3 | 3 | 0.000154197 |
Solanum lycopersicum | ch06 | 17 | CH_sly_489 | 3 | 4 | 0.000909434 |
Solanum lycopersicum | ch12 | 17 | CH_sly_490 | 3 | 4 | 0.000909434 |
Vitis vinifera | chr1 | 17 | CH_vvi_142 | 7 | 27 | 0.0000000140175 |
Vitis vinifera | chr16 | 17 | CH_vvi_391 | 3 | 3 | 0.000454712 |
Vitis vinifera | chr2 | 17 | CH_vvi_317 | 4 | 8 | 0.0000792591 |
Vitis vinifera | chrUn | 17 | CH_vvi_390 | 3 | 3 | 0.000454712 |
Functional clusters experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | X |
2 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | X |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | X |
4 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | X |
5 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | X |
6 | GO | All GO data. | 10 | 150 | 300 | 0.001 | X |
7 | GO | Primary GO data only. | 2 | 30 | 80 | 0.001 | V |
8 | GO | Primary and orthology projected GO data. | 2 | 30 | 80 | 0.001 | V |
9 | GO | All GO data. | 2 | 30 | 80 | 0.001 | V |
10 | GO | Primary GO data only. | 10 | 150 | 300 | 0.001 | V |
11 | GO | Primary and orthology projected GO data. | 10 | 150 | 300 | 0.001 | V |
12 | GO | All GO data. | 10 | 150 | 300 | 0.001 | V |
13 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | X |
14 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | X |
15 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | V |
16 | InterPro | No filter applied. | 10 | 150 | 300 | 0.001 | V |
17 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | X |
18 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | X |
19 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | V |
20 | MapMan | No filter applied. | 10 | 150 | 300 | 0.001 | V |