PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 29.5.9
Description: protein.degradation.AAA type

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_39	8	11	2.95774e-17
Arabidopsis thaliana	5	17	CH_ath_163	4	4	0.0000000942598
Brassica rapa	A06	17	CH_bra_42	5	5	0.00000000238649
Capsella rubella	scaffold_3	17	CH_cru_273	3	3	0.000330487
Capsella rubella	scaffold_5	17	CH_cru_274	3	3	0.000330487
Capsella rubella	scaffold_5	17	CH_cru_17	9	11	1.81653e-18
Capsella rubella	scaffold_6	17	CH_cru_151	4	4	0.000000744169
Capsella rubella	scaffold_5	18	CH_cru_37	10	162	0.000000130891
Citrus sinensis	scaffold00015	17	CH_csi_80	4	4	0.000000852073
Citrus sinensis	scaffold00017	17	CH_csi_194	3	3	0.00033165
Citrus sinensis	scaffold00287	17	CH_csi_20	6	6	0.00000000000524758
Citrus sinensis	scaffold00326	17	CH_csi_195	3	3	0.00033165
Eucalyptus grandis	scaffold_10	17	CH_egr_343	5	5	0.00000000227056
Eucalyptus grandis	scaffold_10	17	CH_egr_34	14	17	1.27119e-30
Eucalyptus grandis	scaffold_3	17	CH_egr_65	11	14	8.21606e-23
Eucalyptus grandis	scaffold_5	17	CH_egr_582	4	5	0.00000502006
Eucalyptus grandis	scaffold_9	17	CH_egr_167	7	7	0.0000000000000111239
Eucalyptus grandis	scaffold_10	18	CH_egr_37	14	17	1.27119e-30
Eucalyptus grandis	scaffold_3	18	CH_egr_60	11	14	8.21606e-23
Eucalyptus grandis	scaffold_5	19	CH_egr_6	3	4	0.000203587
Glycine max	Gm11	17	CH_gma_450	3	3	0.000509421
Glycine max	Gm19	17	CH_gma_449	3	3	0.000509421
Gossypium raimondii	Chr01	17	CH_gra_240	4	8	0.0000246669
Malus domestica	11	17	CH_mdo_216	3	3	0.000146248
Malus domestica	9	17	CH_mdo_105	4	5	0.00000106202
Manihot esculenta	scaffold03741	17	CH_mes_169	3	3	0.000168909
Manihot esculenta	scaffold07520	17	CH_mes_118	4	6	0.00000482584
Oryza sativa ssp. japonica	12	17	CH_osa_205	6	53	0.00000199085
Oryza sativa ssp. japonica	12	17	CH_osa_379	3	4	0.000305835
Oryza sativa ssp. japonica	7	17	CH_osa_309	3	3	0.0000765219
Oryza sativa ssp. japonica	7	17	CH_osa_217	4	7	0.00000287245
Populus trichocarpa	Chr07	17	CH_ptr_162	6	14	0.0000000104963
Prunus persica	scaffold_3	17	CH_ppe_86	6	6	0.00000000000297664
Prunus persica	scaffold_6	17	CH_ppe_388	3	3	0.000309534
Prunus persica	scaffold_7	17	CH_ppe_26	10	12	3.13484e-21
Prunus persica	scaffold_7	18	CH_ppe_24	10	12	3.13484e-21
Prunus persica	scaffold_1	19	CH_ppe_3	3	4	0.000332011
Ricinus communis	29634	17	CH_rco_78	5	7	0.0000000109448
Ricinus communis	29929	17	CH_rco_204	3	3	0.000154197
Solanum lycopersicum	ch06	17	CH_sly_489	3	4	0.000909434
Solanum lycopersicum	ch12	17	CH_sly_490	3	4	0.000909434
Vitis vinifera	chr1	17	CH_vvi_142	7	27	0.0000000140175
Vitis vinifera	chr16	17	CH_vvi_391	3	3	0.000454712
Vitis vinifera	chr2	17	CH_vvi_317	4	8	0.0000792591
Vitis vinifera	chrUn	17	CH_vvi_390	3	3	0.000454712

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V