PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 27.1.19
Description: RNA.processing.ribonucleases

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsella rubella	scaffold_5	17	CH_cru_269	3	3	0.000284077
Citrus sinensis	scaffold00016	17	CH_csi_14	8	14	0.000000000000072259
Eucalyptus grandis	scaffold_1	17	CH_egr_47	17	39	3.10862e-27
Eucalyptus grandis	scaffold_8	17	CH_egr_1	30	38	6.94179e-63
Eucalyptus grandis	scaffold_9	17	CH_egr_345	6	8	0.00000000235261
Eucalyptus grandis	scaffold_1	18	CH_egr_45	17	39	3.10862e-27
Eucalyptus grandis	scaffold_8	18	CH_egr_3	34	44	2.25228e-71
Glycine max	Gm02	17	CH_gma_213	4	4	0.000000985411
Glycine max	Gm15	17	CH_gma_91	7	17	0.000000000151303
Gossypium raimondii	Chr05	17	CH_gra_15	15	25	1.13672e-27
Gossypium raimondii	Chr11	17	CH_gra_37	10	14	2.09706e-18
Gossypium raimondii	Chr05	18	CH_gra_15	15	25	1.13672e-27
Gossypium raimondii	Chr11	18	CH_gra_33	10	14	2.09706e-18
Malus domestica	13	17	CH_mdo_1	12	15	6.77816e-26
Malus domestica	15	17	CH_mdo_125	4	5	0.00000393652
Malus domestica	16	17	CH_mdo_21	9	44	0.0000000000152807
Malus domestica	13	18	CH_mdo_1	12	15	6.77816e-26
Manihot esculenta	scaffold01551	17	CH_mes_9	9	10	1.08198e-19
Manihot esculenta	scaffold01945	17	CH_mes_81	4	4	0.000000426725
Oryza sativa ssp. japonica	10	17	CH_osa_305	4	14	0.0000624268
Populus trichocarpa	Chr08	17	CH_ptr_98	7	11	0.00000000000516512
Populus trichocarpa	Chr10	17	CH_ptr_291	4	5	0.00000647753
Populus trichocarpa	Chr11	17	CH_ptr_243	4	4	0.00000129795
Prunus persica	scaffold_1	17	CH_ppe_7	17	19	7.99206e-38
Prunus persica	scaffold_4	17	CH_ppe_240	4	4	0.00000196566
Prunus persica	scaffold_1	18	CH_ppe_7	17	19	7.99206e-38
Ricinus communis	29726	17	CH_rco_32	7	13	0.0000000000119744
Ricinus communis	29889	17	CH_rco_16	7	7	0.00000000000000705807
Solanum lycopersicum	ch01	17	CH_sly_85	9	46	0.0000000000723243
Solanum lycopersicum	ch01	17	CH_sly_137	5	6	0.0000000162101
Solanum lycopersicum	ch09	17	CH_sly_211	4	4	0.00000116045
Solanum lycopersicum	ch01	18	CH_sly_28	14	97	7.39776e-17
Vitis vinifera	chr5	17	CH_vvi_14	13	14	8.85485e-31
Vitis vinifera	chr5	18	CH_vvi_15	13	14	8.85485e-31
Zea mays	2	17	CH_zma_167	5	23	0.0000401823
Zea mays	5	17	CH_zma_235	3	3	0.000323702

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V