PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 26.1
Description: misc.misc2

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Chlamydomonas reinhardtii	chromosome_1	17	CH_cre_63	3	10	0.000663996
Citrus sinensis	scaffold00011	17	CH_csi_39	5	7	0.00000000124251
Eucalyptus grandis	scaffold_1	17	CH_egr_753	3	3	0.000176433
Eucalyptus grandis	scaffold_11	17	CH_egr_234	6	7	0.00000000000545527
Eucalyptus grandis	scaffold_2	17	CH_egr_219	6	6	0.000000000000780407
Eucalyptus grandis	scaffold_4	17	CH_egr_220	6	6	0.000000000000780407
Eucalyptus grandis	scaffold_8	17	CH_egr_85	9	9	2.92702e-21
Eucalyptus grandis	scaffold_11	18	CH_egr_171	11	182	0.000000000680601
Eucalyptus grandis	scaffold_8	18	CH_egr_194	11	267	0.0000000453935
Glycine max	Gm06	17	CH_gma_447	3	4	0.00047124
Glycine max	Gm07	17	CH_gma_92	5	5	0.000000000184762
Glycine max	Gm09	17	CH_gma_446	3	4	0.00047124
Glycine max	Gm17	17	CH_gma_238	4	6	0.00000222603
Glycine max	Gm19	17	CH_gma_168	4	4	0.000000148703
Gossypium raimondii	Chr12	17	CH_gra_205	4	8	0.00000575001
Gossypium raimondii	Chr13	17	CH_gra_91	5	5	0.0000000000950483
Malus domestica	16	17	CH_mdo_183	3	3	0.0000552777
Manihot esculenta	scaffold05019	17	CH_mes_150	3	3	0.0000746751
Manihot esculenta	scaffold06089	17	CH_mes_198	3	4	0.000298365
Manihot esculenta	scaffold09000	17	CH_mes_138	5	30	0.0000205179
Oryza sativa ssp. japonica	10	17	CH_osa_74	5	6	0.0000000000906838
Oryza sativa ssp. japonica	11	17	CH_osa_400	3	6	0.000545919
Oryza sativa ssp. japonica	5	17	CH_osa_241	4	11	0.0000067632
Oryza sativa ssp. japonica	8	17	CH_osa_182	4	7	0.00000071905
Oryza sativa ssp. japonica	11	19	CH_osa_18	3	6	0.000190922
Oryza sativa ssp. japonica	8	19	CH_osa_5	4	7	0.00000017364
Populus trichocarpa	Chr10	17	CH_ptr_350	3	3	0.0000568838
Populus trichocarpa	Chr13	17	CH_ptr_195	4	4	0.0000000611302
Populus trichocarpa	scaffold_32	17	CH_ptr_395	3	4	0.000227346
Prunus persica	scaffold_1	17	CH_ppe_386	3	4	0.000284654
Prunus persica	scaffold_1	17	CH_ppe_188	4	4	0.0000000924369
Prunus persica	scaffold_3	17	CH_ppe_125	5	6	0.000000000698984
Ricinus communis	29726	17	CH_rco_187	3	3	0.000078921
Solanum lycopersicum	ch01	17	CH_sly_315	3	3	0.000038659
Solanum lycopersicum	ch05	17	CH_sly_365	3	4	0.000154518
Vitis vinifera	chr12	17	CH_vvi_332	3	3	0.000114941
Vitis vinifera	chr5	17	CH_vvi_112	5	5	0.000000000272701
Vitis vinifera	chr7	17	CH_vvi_182	4	4	0.00000017924
Zea mays	5	17	CH_zma_188	3	5	0.000108286

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V