PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 17.5.2
Description: hormone metabolism.ethylene.signal transduction

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	3	17	CH_ath_276	3	3	0.0000347811
Brassica rapa	A01	17	CH_bra_207	4	12	0.000122524
Brassica rapa	A08	17	CH_bra_219	3	3	0.000162114
Capsella rubella	scaffold_3	17	CH_cru_222	4	12	0.0000303907
Citrus sinensis	scaffold00088	17	CH_csi_143	3	3	0.0000470426
Eucalyptus grandis	scaffold_2	17	CH_egr_703	3	3	0.0000591889
Glycine max	Gm03	17	CH_gma_220	4	4	0.00000117444
Glycine max	Gm09	17	CH_gma_454	3	3	0.000550708
Glycine max	Gm10	17	CH_gma_453	3	3	0.000550708
Glycine max	Gm13	17	CH_gma_51	7	7	0.0000000000000108071
Glycine max	Gm19	17	CH_gma_108	5	5	0.00000000248286
Glycine max	Gm20	17	CH_gma_455	3	3	0.000550708
Gossypium raimondii	Chr01	17	CH_gra_335	3	3	0.000473102
Gossypium raimondii	Chr01	17	CH_gra_334	3	3	0.000473102
Gossypium raimondii	Chr04	17	CH_gra_333	3	3	0.000473102
Manihot esculenta	scaffold09880	17	CH_mes_177	3	3	0.000221931
Manihot esculenta	scaffold11581	17	CH_mes_176	3	3	0.000221931
Oryza sativa ssp. japonica	12	17	CH_osa_372	4	10	0.000235901
Oryza sativa ssp. japonica	4	17	CH_osa_298	4	7	0.0000395157
Populus trichocarpa	Chr03	17	CH_ptr_6	23	40	1.48787e-40
Populus trichocarpa	Chr06	17	CH_ptr_260	5	8	0.00000272496
Populus trichocarpa	Chr13	17	CH_ptr_352	4	5	0.0000597743
Populus trichocarpa	Chr14	17	CH_ptr_384	4	6	0.000178731
Populus trichocarpa	Chr16	17	CH_ptr_78	8	10	0.000000000000145799
Populus trichocarpa	Chr17	17	CH_ptr_41	11	20	3.33001e-17
Populus trichocarpa	Chr03	18	CH_ptr_7	23	40	1.48787e-40
Populus trichocarpa	Chr17	18	CH_ptr_38	11	20	3.33001e-17
Prunus persica	scaffold_7	17	CH_ppe_422	3	5	0.000555506
Solanum lycopersicum	ch03	17	CH_sly_182	5	8	0.00000020185
Solanum lycopersicum	ch03	17	CH_sly_451	3	3	0.000584512
Solanum lycopersicum	ch05	17	CH_sly_452	3	3	0.000584512
Solanum lycopersicum	ch08	17	CH_sly_293	4	6	0.0000218783
Vitis vinifera	chr15	17	CH_vvi_329	3	3	0.000114941
Vitis vinifera	chr16	17	CH_vvi_24	13	24	7.31543e-27
Vitis vinifera	chr7	17	CH_vvi_181	4	4	0.00000017924
Vitis vinifera	chr16	18	CH_vvi_25	13	24	7.31543e-27
Zea mays	1	17	CH_zma_37	5	5	0.000000000463429

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V