PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: Mapman term
Identifier: 16.1.5
Description: secondary metabolism.isoprenoids.terpenoids

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	1	17	CH_ath_221	6	57	0.00000353914
Arabidopsis thaliana	3	17	CH_ath_382	3	5	0.00065461
Arabidopsis thaliana	4	17	CH_ath_348	3	4	0.000262086
Capsella rubella	scaffold_2	17	CH_cru_241	3	3	0.000100317
Capsella rubella	scaffold_8	17	CH_cru_104	5	8	0.000000012083
Citrus sinensis	scaffold00010	17	CH_csi_100	4	6	0.00000256975
Eucalyptus grandis	scaffold_4	17	CH_egr_59	12	15	6.54651e-24
Eucalyptus grandis	scaffold_4	17	CH_egr_231	7	9	0.00000000000279223
Eucalyptus grandis	scaffold_5	17	CH_egr_80	14	38	9.91314e-22
Eucalyptus grandis	scaffold_5	17	CH_egr_558	4	4	0.00000300335
Eucalyptus grandis	scaffold_6	17	CH_egr_131	9	11	3.55758e-17
Eucalyptus grandis	scaffold_6	17	CH_egr_83	10	10	1.8492e-21
Eucalyptus grandis	scaffold_4	18	CH_egr_56	12	15	6.54651e-24
Eucalyptus grandis	scaffold_5	18	CH_egr_72	14	38	9.91314e-22
Eucalyptus grandis	scaffold_6	18	CH_egr_203	11	165	0.000000153669
Eucalyptus grandis	scaffold_6	18	CH_egr_75	10	10	1.8492e-21
Glycine max	Gm03	17	CH_gma_369	3	4	0.000117038
Glycine max	Gm12	17	CH_gma_409	4	25	0.000284683
Gossypium raimondii	Chr02	17	CH_gra_332	3	3	0.000456973
Gossypium raimondii	Chr06	17	CH_gra_71	7	10	0.00000000000130405
Gossypium raimondii	Chr07	17	CH_gra_7	16	20	3.16833e-35
Gossypium raimondii	Chr09	17	CH_gra_44	8	9	2.10566e-16
Gossypium raimondii	Chr09	17	CH_gra_331	3	3	0.000456973
Gossypium raimondii	Chr09	17	CH_gra_107	5	5	0.00000000228954
Gossypium raimondii	Chr09	17	CH_gra_330	3	3	0.000456973
Gossypium raimondii	Chr10	17	CH_gra_80	6	7	0.00000000000503305
Gossypium raimondii	Chr11	17	CH_gra_106	5	5	0.00000000228954
Gossypium raimondii	Chr07	18	CH_gra_10	16	20	3.16833e-35
Malus domestica	10	17	CH_mdo_157	4	11	0.0000188355
Malus domestica	11	17	CH_mdo_138	4	9	0.00000720376
Malus domestica	12	17	CH_mdo_102	4	6	0.000000859743
Malus domestica	9	17	CH_mdo_168	4	12	0.0000282296
Manihot esculenta	scaffold03818	17	CH_mes_60	4	4	0.0000000191286
Oryza sativa ssp. japonica	2	17	CH_osa_137	6	26	0.0000000430061
Oryza sativa ssp. japonica	2	17	CH_osa_135	5	10	0.0000000404099
Oryza sativa ssp. japonica	3	17	CH_osa_42	7	10	0.0000000000000265681
Oryza sativa ssp. japonica	4	17	CH_osa_395	3	4	0.000440133
Oryza sativa ssp. japonica	4	17	CH_osa_16	13	73	3.23237e-20
Oryza sativa ssp. japonica	8	17	CH_osa_396	3	4	0.000440133
Oryza sativa ssp. japonica	4	18	CH_osa_18	13	73	3.23237e-20
Oryza sativa ssp. japonica	11	19	CH_osa_16	3	5	0.0001624
Populus trichocarpa	Chr06	17	CH_ptr_400	3	3	0.000263434
Populus trichocarpa	Chr07	17	CH_ptr_401	3	3	0.000263434
Populus trichocarpa	Chr14	17	CH_ptr_156	6	14	0.0000000045527
Populus trichocarpa	Chr19	17	CH_ptr_101	7	14	0.00000000000911642
Populus trichocarpa	Chr19	17	CH_ptr_256	7	68	0.00000237027
Populus trichocarpa	Chr19	17	CH_ptr_172	5	7	0.0000000181071
Populus trichocarpa	scaffold_20	17	CH_ptr_87	7	11	0.000000000000880625
Populus trichocarpa	Chr19	18	CH_ptr_65	14	299	0.0000000000224866
Prunus persica	scaffold_3	17	CH_ppe_30	9	9	1.47379e-19
Prunus persica	scaffold_4	17	CH_ppe_92	9	35	0.00000000000982429
Ricinus communis	30169	17	CH_rco_92	8	72	0.0000000777163
Ricinus communis	30206	17	CH_rco_56	6	11	0.000000000881816
Solanum lycopersicum	ch01	17	CH_sly_9	12	12	5.68916e-27
Solanum lycopersicum	ch01	17	CH_sly_152	5	6	0.0000000371927
Solanum lycopersicum	ch02	17	CH_sly_366	4	8	0.000155909
Solanum lycopersicum	ch12	17	CH_sly_335	4	7	0.0000781294
Solanum lycopersicum	ch12	17	CH_sly_469	3	3	0.000804524
Solanum lycopersicum	ch01	18	CH_sly_9	12	12	5.68916e-27
Vitis vinifera	chr10	17	CH_vvi_22	15	18	2.26947e-27
Vitis vinifera	chr10_random	17	CH_vvi_256	5	8	0.00000820387
Vitis vinifera	chr18_random	17	CH_vvi_1	30	36	1.09713e-58
Vitis vinifera	chr19	17	CH_vvi_109	7	9	0.00000000016002
Vitis vinifera	chr4	17	CH_vvi_287	4	4	0.0000267508
Vitis vinifera	chr9	17	CH_vvi_3	27	46	2.19973e-45
Vitis vinifera	chrUn	17	CH_vvi_261	8	50	0.000010692
Vitis vinifera	chr10	18	CH_vvi_23	15	18	2.26947e-27
Vitis vinifera	chr18_random	18	CH_vvi_1	43	55	4.6737e-84
Vitis vinifera	chr9	18	CH_vvi_4	27	46	2.19973e-45
Zea mays	10	17	CH_zma_146	4	10	0.0000130099
Zea mays	2	17	CH_zma_179	3	3	0.0000575926
Zea mays	10	18	CH_zma_22	10	222	0.00000000324191

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V