PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_2	14	CH_aly_42	10	240	0.0000168103
Capsella rubella	scaffold_2	14	CH_cru_51	10	237	0.0000577927
Eucalyptus grandis	scaffold_1	13	CH_egr_560	6	7	0.00000000853271
Glycine max	Gm15	14	CH_gma_61	11	169	0.0000000706303
Gossypium raimondii	Chr09	13	CH_gra_377	4	5	0.0000311051
Manihot esculenta	scaffold06011	13	CH_mes_173	4	4	0.00000405739
Manihot esculenta	scaffold06011	15	CH_mes_12	3	4	0.000994196
Oryza sativa ssp. japonica	6	13	CH_osa_667	4	18	0.000175006
Populus trichocarpa	Chr04	13	CH_ptr_793	4	12	0.000862712
Ricinus communis	29168	13	CH_rco_209	4	4	0.00000217768
Ricinus communis	29168	15	CH_rco_10	3	4	0.000765103
Solanum lycopersicum	ch05	13	CH_sly_131	7	10	0.00000000000933054
Thellungiella parvula	ch1-1	14	CH_tpa_6	10	80	0.000000000780275
Theobroma cacao	scaffold_5	13	CH_tca_199	5	6	0.0000000191661

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V