PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR016040
Description: NAD(P)-binding domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00049	13	CH_atr_497	4	4	0.000619322
Amborella trichopoda	scaffold00153	13	CH_atr_302	5	6	0.0000456378
Arabidopsis thaliana	4	13	CH_ath_548	5	9	0.000643229
Beta vulgaris	Bvchr1.sca001	13	CH_bvu_363	5	8	0.000255611
Beta vulgaris	Bvchr4.sca001	14	CH_bvu_19	10	41	0.000000780647
Beta vulgaris	Bvchr1.sca001	15	CH_bvu_7	5	8	0.00010751
Citrullus lanatus	Chr10	13	CH_cla_502	4	4	0.000942149
Citrullus lanatus	Chr9	13	CH_cla_217	5	5	0.000013233
Citrus sinensis	scaffold00001	13	CH_csi_52	9	11	0.0000000000331582
Citrus sinensis	scaffold00001	14	CH_csi_18	13	76	0.00000179392
Cucumis melo	CM3.5_scaffold00011	13	CH_cme_409	4	4	0.000433329
Eucalyptus grandis	scaffold_5	14	CH_egr_127	38	265	6.545e-19
Eucalyptus grandis	scaffold_8	14	CH_egr_270	10	53	0.00084682
Eucalyptus grandis	scaffold_8	14	CH_egr_188	10	12	0.00000000000546977
Fragaria vesca	LG7	13	CH_fve_186	9	18	0.00000000853456
Glycine max	Gm03	13	CH_gma_612	6	11	0.000151948
Glycine max	Gm09	13	CH_gma_343	7	10	0.000000548303
Glycine max	Gm19	13	CH_gma_327	9	22	0.000000368972
Glycine max	Gm07	14	CH_gma_76	14	116	0.0000434571
Gossypium raimondii	Chr01	13	CH_gra_337	10	41	0.00000726368
Gossypium raimondii	Chr11	13	CH_gra_248	6	6	0.000000267511
Gossypium raimondii	Chr01	14	CH_gra_73	10	41	0.00000726368
Lotus japonicus	chr3	13	CH_lja_149	9	62	0.000023121
Lotus japonicus	chr3	14	CH_lja_4	10	96	0.0000732731
Manihot esculenta	scaffold06659	13	CH_mes_192	6	8	0.00000919096
Manihot esculenta	scaffold11106	13	CH_mes_157	8	17	0.00000177893
Medicago truncatula	chr7	13	CH_mtr_521	6	9	0.000000386947
Medicago truncatula	chr7	14	CH_mtr_159	14	166	0.00000398596
Medicago truncatula	chr8	14	CH_mtr_187	10	107	0.000864034
Oryza sativa ssp. japonica	7	13	CH_osa_391	6	9	0.00000124346
Oryza sativa ssp. japonica	7	14	CH_osa_123	10	75	0.0000312809
Oryza sativa ssp. japonica	9	14	CH_osa_104	12	84	0.000000251256
Populus trichocarpa	Chr02	13	CH_ptr_305	8	13	0.0000000924276
Populus trichocarpa	Chr14	13	CH_ptr_496	5	5	0.0000256769
Populus trichocarpa	Chr14	13	CH_ptr_691	6	12	0.000317509
Populus trichocarpa	Chr01	14	CH_ptr_78	11	15	0.00000000000029125
Populus trichocarpa	Chr02	14	CH_ptr_88	21	156	0.000000000640929
Populus trichocarpa	Chr09	14	CH_ptr_110	10	60	0.000616846
Prunus persica	scaffold_1	13	CH_ppe_474	5	5	0.0000301219
Prunus persica	scaffold_2	13	CH_ppe_283	8	12	0.0000000573579
Ricinus communis	30174	13	CH_rco_111	8	11	0.00000000635442
Ricinus communis	30174	14	CH_rco_20	16	112	0.000000169386
Solanum lycopersicum	ch01	13	CH_sly_96	10	11	0.0000000000000402941
Solanum lycopersicum	ch01	14	CH_sly_47	10	11	0.0000000000000402941
Solanum tuberosum	chr01	13	CH_stu_181	10	11	0.000000000000226563
Solanum tuberosum	chr01	14	CH_stu_100	10	11	0.000000000000226563
Theobroma cacao	scaffold_1	13	CH_tca_34	14	18	2.61687e-19
Theobroma cacao	scaffold_4	13	CH_tca_545	5	7	0.000216975
Theobroma cacao	scaffold_1	14	CH_tca_28	14	18	2.61687e-19
Vitis vinifera	chr16	13	CH_vvi_664	5	7	0.000745205
Vitis vinifera	chr15	14	CH_vvi_66	11	24	0.00000000160901
Vitis vinifera	chr3	14	CH_vvi_88	10	47	0.000139877
Vitis vinifera	chr5	14	CH_vvi_89	10	48	0.000174026
Zea mays	9	13	CH_zma_211	6	8	0.00000266668

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V