PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR015500
Description: Peptidase S8, subtilisin-related

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00040	13	CH_atr_159	6	11	0.0000000312001
Amborella trichopoda	scaffold00069	13	CH_atr_17	18	41	2.85044e-29
Amborella trichopoda	scaffold00122	13	CH_atr_291	4	5	0.0000255859
Amborella trichopoda	scaffold00069	14	CH_atr_17	18	41	2.85044e-29
Arabidopsis lyrata	scaffold_1	13	CH_aly_144	5	5	0.00000000220226
Arabidopsis lyrata	scaffold_8	13	CH_aly_68	11	55	0.0000000000000445714
Arabidopsis lyrata	scaffold_8	14	CH_aly_27	11	55	0.0000000000000445714
Arabidopsis thaliana	4	13	CH_ath_290	6	45	0.00000584622
Arabidopsis thaliana	5	13	CH_ath_67	9	40	0.000000000000715045
Arabidopsis thaliana	5	14	CH_ath_30	10	110	0.000000000171126
Capsella rubella	scaffold_7	13	CH_cru_459	3	3	0.000229252
Carica papaya	supercontig_81	13	CH_cpa_6	14	27	1.84308e-26
Carica papaya	supercontig_81	14	CH_cpa_6	14	27	1.84308e-26
Citrullus lanatus	Chr1	13	CH_cla_457	3	4	0.000658908
Citrus sinensis	scaffold00040	13	CH_csi_328	3	3	0.000394365
Cucumis melo	CM3.5_scaffold00005	13	CH_cme_399	3	3	0.000285732
Cucumis melo	CM3.5_scaffold00063	13	CH_cme_27	11	22	5.22417e-20
Cucumis melo	CM3.5_scaffold00063	14	CH_cme_19	11	22	5.22417e-20
Fragaria vesca	LG5	13	CH_fve_140	5	5	0.000000000526665
Glycine max	Gm06	13	CH_gma_813	3	3	0.000860886
Glycine max	Gm09	13	CH_gma_455	4	5	0.0000106499
Glycine max	Gm16	13	CH_gma_454	4	5	0.0000106499
Malus domestica	14	13	CH_mdo_49	6	9	0.000000000245381
Malus domestica	2	13	CH_mdo_37	6	7	0.0000000000205175
Manihot esculenta	scaffold03942	13	CH_mes_145	4	4	0.000000942247
Medicago truncatula	chr3	13	CH_mtr_931	5	28	0.000110476
Oryza sativa ssp. japonica	2	13	CH_osa_334	5	14	0.000000251574
Oryza sativa ssp. japonica	4	13	CH_osa_95	11	79	0.0000000000000151715
Oryza sativa ssp. japonica	4	14	CH_osa_65	11	79	0.0000000000000151715
Ricinus communis	29751	13	CH_rco_73	6	7	0.0000000000975225
Ricinus communis	30143	13	CH_rco_107	5	5	0.00000000490326
Solanum lycopersicum	ch01	13	CH_sly_29	11	12	5.01978e-23
Solanum lycopersicum	ch02	13	CH_sly_199	6	10	0.00000000496283
Solanum lycopersicum	ch03	13	CH_sly_426	4	5	0.000014041
Solanum lycopersicum	ch05	13	CH_sly_810	3	3	0.000952601
Solanum lycopersicum	ch10	13	CH_sly_358	4	4	0.00000281487
Solanum lycopersicum	ch01	14	CH_sly_25	11	12	5.01978e-23
Solanum tuberosum	chr02	13	CH_stu_273	7	11	0.000000000108733
Solanum tuberosum	chr03	13	CH_stu_455	5	6	0.000000151499
Solanum tuberosum	chr03	13	CH_stu_621	4	4	0.00000689672
Solanum tuberosum	chr08	13	CH_stu_44	20	77	3.54313e-27
Solanum tuberosum	chr10	13	CH_stu_407	5	5	0.0000000253275
Solanum tuberosum	chr08	14	CH_stu_44	20	77	3.54313e-27
Solanum tuberosum	chr10	14	CH_stu_143	10	174	0.0000478033
Thellungiella parvula	ch7-4	13	CH_tpa_269	3	3	0.000248534
Vitis vinifera	chr16	14	CH_vvi_82	10	168	0.0000117062

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V