PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR006626
Description: Parallel beta-helix repeat

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00003	13	CH_atr_359	3	4	0.0000861476
Arabidopsis lyrata	scaffold_3	13	CH_aly_424	3	3	0.000156877
Arabidopsis lyrata	scaffold_4	13	CH_aly_255	4	5	0.000001286
Arabidopsis lyrata	scaffold_7	13	CH_aly_425	3	3	0.000156877
Arabidopsis thaliana	1	13	CH_ath_461	3	3	0.000200981
Arabidopsis thaliana	2	13	CH_ath_289	4	6	0.00000527878
Arabidopsis thaliana	2	13	CH_ath_460	3	3	0.000200981
Arabidopsis thaliana	3	13	CH_ath_210	4	4	0.000000352913
Arabidopsis thaliana	4	13	CH_ath_552	3	4	0.000802842
Beta vulgaris	Bvchr1.sca002	13	CH_bvu_151	4	4	0.0000000740351
Beta vulgaris	Bvchr3.sca006	13	CH_bvu_67	6	10	0.0000000000234673
Brassica rapa	A03	13	CH_bra_380	4	12	0.000283486
Brassica rapa	A04	13	CH_bra_158	4	4	0.000000579773
Brassica rapa	A05	13	CH_bra_400	3	3	0.000303462
Capsella rubella	scaffold_3	13	CH_cru_227	4	4	0.000000489968
Capsella rubella	scaffold_4	13	CH_cru_128	5	5	0.000000000972418
Capsella rubella	scaffold_7	13	CH_cru_463	3	3	0.000242229
Carica papaya	supercontig_69	13	CH_cpa_370	4	23	0.00035726
Citrullus lanatus	Chr8	13	CH_cla_344	3	3	0.000226304
Eucalyptus grandis	scaffold_11	13	CH_egr_447	5	5	0.000000000134087
Eucalyptus grandis	scaffold_3	13	CH_egr_1039	3	3	0.0000830313
Fragaria vesca	LG1	13	CH_fve_469	3	3	0.000105415
Fragaria vesca	LG6	13	CH_fve_468	3	3	0.000105415
Glycine max	Gm04	13	CH_gma_615	3	3	0.000162392
Gossypium raimondii	Chr11	13	CH_gra_434	3	3	0.000106212
Gossypium raimondii	Chr13	13	CH_gra_230	5	11	0.000000088714
Lotus japonicus	chr1	13	CH_lja_288	3	6	0.000670976
Medicago truncatula	chr1	13	CH_mtr_617	4	7	0.00000204802
Medicago truncatula	chr8	13	CH_mtr_193	6	7	0.00000000000035331
Oryza sativa ssp. japonica	7	13	CH_osa_350	4	7	0.000000435269
Populus trichocarpa	Chr07	13	CH_ptr_363	5	13	0.000000448293
Populus trichocarpa	Chr19	13	CH_ptr_223	5	6	0.00000000210831
Prunus persica	scaffold_4	13	CH_ppe_364	4	6	0.00000111116
Prunus persica	scaffold_7	13	CH_ppe_493	3	3	0.0000605645
Solanum lycopersicum	ch02	13	CH_sly_550	3	3	0.0000854043
Solanum lycopersicum	ch12	13	CH_sly_155	6	12	0.000000000157647
Solanum lycopersicum	ch12	13	CH_sly_549	3	3	0.0000854043
Solanum tuberosum	chr02	13	CH_stu_440	4	4	0.0000000987469
Solanum tuberosum	chr12	13	CH_stu_812	3	3	0.0000788359
Solanum tuberosum	chr12	13	CH_stu_224	6	8	0.00000000000403864
Thellungiella parvula	ch3-1	13	CH_tpa_243	3	3	0.000174538
Thellungiella parvula	ch4-6	13	CH_tpa_49	5	5	0.000000000570536
Theobroma cacao	scaffold_5	13	CH_tca_430	3	3	0.0000417154
Vitis vinifera	chr8	13	CH_vvi_237	4	4	0.0000000668354
Vitis vinifera	chr9	13	CH_vvi_282	4	5	0.000000333853

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V