PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR003441
Description: NAC domain

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_1	13	CH_aly_129	6	7	0.000000000669552
Arabidopsis lyrata	scaffold_2	13	CH_aly_539	5	20	0.000380956
Arabidopsis lyrata	scaffold_1	15	CH_aly_21	4	6	0.0000358919
Arabidopsis thaliana	1	13	CH_ath_326	4	5	0.0000210516
Arabidopsis thaliana	1	13	CH_ath_201	6	15	0.000000218852
Brassica rapa	A09	13	CH_bra_322	6	25	0.000105878
Brassica rapa	A10	13	CH_bra_14	10	13	1.05547e-16
Brassica rapa	A10	14	CH_bra_10	10	13	1.05547e-16
Capsella rubella	scaffold_1	13	CH_cru_181	5	5	0.0000000297412
Capsella rubella	scaffold_2	13	CH_cru_512	4	8	0.000512792
Carica papaya	supercontig_80	13	CH_cpa_42	7	12	0.0000000000499947
Citrus sinensis	scaffold00001	13	CH_csi_159	4	4	0.00000277643
Citrus sinensis	scaffold00054	13	CH_csi_379	3	3	0.000799011
Citrus sinensis	scaffold00137	13	CH_csi_215	4	6	0.0000414143
Eucalyptus grandis	scaffold_1	13	CH_egr_290	8	9	0.0000000000000406108
Eucalyptus grandis	scaffold_1	13	CH_egr_627	5	5	0.0000000571725
Eucalyptus grandis	scaffold_10	13	CH_egr_86	13	15	6.01112e-25
Eucalyptus grandis	scaffold_4	13	CH_egr_628	5	5	0.0000000571725
Eucalyptus grandis	scaffold_6	13	CH_egr_629	5	5	0.0000000571725
Eucalyptus grandis	scaffold_7	13	CH_egr_70	17	32	8.27476e-28
Eucalyptus grandis	scaffold_9	13	CH_egr_228	12	35	0.00000000000000106955
Eucalyptus grandis	scaffold_1	14	CH_egr_214	10	63	0.00000000842199
Eucalyptus grandis	scaffold_10	14	CH_egr_81	13	15	6.01112e-25
Eucalyptus grandis	scaffold_7	14	CH_egr_69	17	32	8.27476e-28
Eucalyptus grandis	scaffold_9	14	CH_egr_150	12	35	0.00000000000000106955
Fragaria vesca	LG7	13	CH_fve_167	6	8	0.00000000315532
Gossypium raimondii	Chr04	13	CH_gra_440	6	32	0.000131147
Malus domestica	1	13	CH_mdo_16	10	21	0.00000000000000114189
Malus domestica	7	13	CH_mdo_40	7	12	0.0000000000964724
Malus domestica	1	14	CH_mdo_8	10	21	0.00000000000000114189
Manihot esculenta	scaffold07520	13	CH_mes_370	4	8	0.000432748
Medicago truncatula	chr7	13	CH_mtr_1020	3	3	0.000221437
Medicago truncatula	chr8	13	CH_mtr_445	5	10	0.0000000595862
Oryza sativa ssp. japonica	11	13	CH_osa_235	5	5	0.00000000627221
Populus trichocarpa	Chr02	13	CH_ptr_628	4	6	0.000181098
Populus trichocarpa	Chr06	13	CH_ptr_244	8	26	0.00000000489162
Populus trichocarpa	Chr14	13	CH_ptr_342	5	6	0.000000298605
Prunus persica	scaffold_2	13	CH_ppe_35	16	38	1.25862e-24
Prunus persica	scaffold_2	14	CH_ppe_33	16	38	1.25862e-24
Ricinus communis	29657	13	CH_rco_207	6	21	0.00000197783
Ricinus communis	30076	13	CH_rco_36	9	16	0.000000000000015203
Solanum lycopersicum	ch02	13	CH_sly_230	8	44	0.0000000229707
Solanum tuberosum	chr04	13	CH_stu_904	6	43	0.000178206
Theobroma cacao	scaffold_1	13	CH_tca_201	5	5	0.0000000198289
Theobroma cacao	scaffold_6	13	CH_tca_477	4	6	0.0000818327
Vitis vinifera	chr15	13	CH_vvi_140	6	7	0.0000000000496114
Vitis vinifera	chr19	13	CH_vvi_210	5	6	0.0000000173947
Zea mays	1	13	CH_zma_17	11	17	1.51829e-18
Zea mays	10	13	CH_zma_76	6	7	0.00000000107057
Zea mays	10	13	CH_zma_462	5	18	0.000323225
Zea mays	6	13	CH_zma_256	4	4	0.0000100347
Zea mays	1	14	CH_zma_11	11	17	1.51829e-18

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V