PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00012	13	CH_atr_120	4	4	0.00000000148278
Arabidopsis lyrata	scaffold_3	13	CH_aly_214	4	10	0.000000288031
Capsella rubella	scaffold_7	13	CH_cru_279	3	3	0.00000397598
Carica papaya	supercontig_95	13	CH_cpa_333	2	2	0.000291248
Citrullus lanatus	Chr10	13	CH_cla_467	2	2	0.000851136
Citrullus lanatus	Chr6	13	CH_cla_468	2	2	0.000851136
Citrus sinensis	scaffold00048	13	CH_csi_297	2	2	0.000347443
Eucalyptus grandis	scaffold_3	13	CH_egr_476	5	19	0.000000000468446
Glycine max	Gm13	13	CH_gma_739	2	2	0.000555001
Glycine max	Gm17	13	CH_gma_740	2	2	0.000555001
Gossypium raimondii	Chr04	13	CH_gra_549	2	2	0.000534288
Solanum lycopersicum	ch07	13	CH_sly_724	2	2	0.00057374
Theobroma cacao	scaffold_9	13	CH_tca_572	2	2	0.000409026

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V