PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: InterPro domain
Identifier: IPR001563
Description: Peptidase S10, serine carboxypeptidase

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00029	13	CH_atr_202	4	5	0.000000435822
Amborella trichopoda	scaffold00038	13	CH_atr_77	6	9	0.0000000000113219
Amborella trichopoda	scaffold00089	13	CH_atr_45	8	20	0.0000000000000228687
Arabidopsis lyrata	scaffold_4	13	CH_aly_76	7	12	0.000000000000337523
Arabidopsis thaliana	1	13	CH_ath_114	5	5	0.000000000297735
Arabidopsis thaliana	2	13	CH_ath_62	6	6	0.000000000000434223
Arabidopsis thaliana	3	13	CH_ath_233	4	5	0.00000099914
Beta vulgaris	0034.scaffold00131	13	CH_bvu_98	6	15	0.00000000103668
Beta vulgaris	Bvchr1.sca004	13	CH_bvu_480	3	5	0.000761406
Beta vulgaris	Bvchr3.sca010	13	CH_bvu_289	3	3	0.0000763137
Beta vulgaris	Bvchr9.sca001	13	CH_bvu_288	3	3	0.0000763137
Capsella rubella	scaffold_4	13	CH_cru_21	9	9	2.74061e-21
Capsella rubella	scaffold_4	14	CH_cru_31	11	103	0.00000000000103011
Carica papaya	supercontig_53	13	CH_cpa_186	3	3	0.0000286158
Citrullus lanatus	Chr5	13	CH_cla_242	3	3	0.000048847
Citrus sinensis	scaffold00004	13	CH_csi_330	3	4	0.000398668
Cucumis melo	CM3.5_scaffold00029	13	CH_cme_238	3	3	0.0000435951
Eucalyptus grandis	scaffold_7	13	CH_egr_1285	3	3	0.00077883
Eucalyptus grandis	scaffold_7	13	CH_egr_187	14	78	2.83857e-17
Eucalyptus grandis	scaffold_8	13	CH_egr_603	5	6	0.0000000355363
Eucalyptus grandis	scaffold_9	13	CH_egr_95	11	11	2.02732e-24
Eucalyptus grandis	scaffold_7	14	CH_egr_123	16	102	2.98455e-19
Eucalyptus grandis	scaffold_9	14	CH_egr_89	11	11	2.02732e-24
Fragaria vesca	LG2	13	CH_fve_451	3	3	0.0000617429
Fragaria vesca	LG2	13	CH_fve_117	5	5	0.0000000000820317
Fragaria vesca	LG5	13	CH_fve_450	3	3	0.0000617429
Gossypium raimondii	Chr08	13	CH_gra_431	3	3	0.000100312
Lotus japonicus	chr3	13	CH_lja_138	3	3	0.00000901662
Malus domestica	15	13	CH_mdo_260	3	3	0.0000116781
Medicago truncatula	chr2	13	CH_mtr_598	4	6	0.0000014925
Medicago truncatula	chr4	13	CH_mtr_870	3	3	0.0000915177
Medicago truncatula	chr4	13	CH_mtr_204	6	7	0.000000000000792302
Oryza sativa ssp. japonica	11	13	CH_osa_165	7	27	0.0000000000619083
Oryza sativa ssp. japonica	3	13	CH_osa_586	3	3	0.0000687344
Oryza sativa ssp. japonica	3	13	CH_osa_281	7	63	0.0000000373931
Oryza sativa ssp. japonica	11	14	CH_osa_97	10	279	0.0000000319454
Oryza sativa ssp. japonica	3	15	CH_osa_15	4	8	0.0000014181
Populus trichocarpa	Chr01	13	CH_ptr_123	7	11	0.000000000000134692
Populus trichocarpa	Chr16	13	CH_ptr_144	6	7	0.00000000000217214
Prunus persica	scaffold_8	13	CH_ppe_34	10	10	5.48792e-25
Prunus persica	scaffold_8	14	CH_ppe_32	10	10	5.48792e-25
Ricinus communis	30099	13	CH_rco_21	8	8	1.07191e-18
Solanum lycopersicum	ch01	13	CH_sly_631	3	3	0.000177712
Solanum lycopersicum	ch04	13	CH_sly_335	4	5	0.00000147653
Solanum lycopersicum	ch04	13	CH_sly_769	3	4	0.000709939
Solanum lycopersicum	ch10	13	CH_sly_237	5	8	0.0000000269685
Solanum lycopersicum	ch12	13	CH_sly_292	4	4	0.000000295702
Solanum tuberosum	chr01	13	CH_stu_945	3	3	0.000289965
Solanum tuberosum	chr01	13	CH_stu_243	6	7	0.0000000000146974
Solanum tuberosum	chr04	13	CH_stu_209	7	11	0.00000000000129548
Solanum tuberosum	chr04	13	CH_stu_806	4	9	0.0000712007
Solanum tuberosum	chr05	13	CH_stu_716	4	8	0.0000396184
Solanum tuberosum	chr12	13	CH_stu_364	5	6	0.00000000660475
Solanum tuberosum	chr04	14	CH_stu_111	14	300	0.0000000000540552
Thellungiella parvula	ch4-1	13	CH_tpa_38	7	21	0.0000000000868093
Theobroma cacao	scaffold_10r	13	CH_tca_604	3	4	0.000545864
Theobroma cacao	scaffold_2	13	CH_tca_313	4	5	0.00000109312
Theobroma cacao	scaffold_7	13	CH_tca_190	5	7	0.00000000718966
Theobroma cacao	scaffold_8	13	CH_tca_254	4	4	0.000000218906
Theobroma cacao	scaffold_7	14	CH_tca_36	11	91	0.000000000000141113
Vitis vinifera	chr11	13	CH_vvi_574	3	3	0.000275848
Vitis vinifera	chr3	13	CH_vvi_53	10	16	2.72147e-19
Vitis vinifera	chr3	14	CH_vvi_40	10	16	2.72147e-19
Zea mays	7	13	CH_zma_178	4	5	0.0000006501

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V