PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0015035
Description: protein disulfide oxidoreductase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis lyrata	scaffold_7	1	CH_aly_36	6	6	0.00000000004081
Arabidopsis lyrata	scaffold_7	2	CH_aly_45	6	6	0.00000000004081
Arabidopsis lyrata	scaffold_7	3	CH_aly_58	6	6	0.0000000000867873
Beta vulgaris	0036.scaffold00137	1	CH_bvu_116	4	5	0.00000802727
Beta vulgaris	0036.scaffold00137	2	CH_bvu_135	4	5	0.00000802727
Beta vulgaris	0036.scaffold00137	3	CH_bvu_174	4	5	0.0000116474
Brassica rapa	A01	1	CH_bra_131	4	6	0.000113764
Brassica rapa	A01	2	CH_bra_188	4	6	0.000113764
Brassica rapa	A01	3	CH_bra_251	4	6	0.000158721
Capsella rubella	scaffold_7	1	CH_cru_24	8	11	0.000000000000133109
Capsella rubella	scaffold_7	2	CH_cru_33	8	11	0.000000000000133109
Capsella rubella	scaffold_7	3	CH_cru_42	8	11	0.000000000000216649
Citrus sinensis	scaffold00001	1	CH_csi_85	4	5	0.0000105792
Citrus sinensis	scaffold00001	2	CH_csi_91	4	5	0.0000105792
Citrus sinensis	scaffold00001	3	CH_csi_116	4	5	0.0000129651
Eucalyptus grandis	scaffold_2	1	CH_egr_601	3	3	0.000524047
Eucalyptus grandis	scaffold_2	2	CH_egr_752	3	3	0.000524047
Fragaria vesca	LG4	1	CH_fve_22	7	10	0.000000000000860222
Fragaria vesca	scf0513018	1	CH_fve_130	4	5	0.00000390775
Fragaria vesca	LG4	2	CH_fve_26	7	10	0.000000000000860222
Fragaria vesca	scf0513018	2	CH_fve_143	4	5	0.00000390775
Fragaria vesca	LG4	3	CH_fve_43	7	10	0.00000000000164677
Fragaria vesca	scf0513018	3	CH_fve_201	4	5	0.00000562239
Glycine max	Gm02	1	CH_gma_187	4	4	0.00000733659
Glycine max	Gm03	1	CH_gma_232	4	5	0.0000365835
Glycine max	Gm10	1	CH_gma_98	5	5	0.0000000247037
Glycine max	Gm19	1	CH_gma_231	4	5	0.0000365835
Glycine max	Gm02	2	CH_gma_230	4	4	0.00000733659
Glycine max	Gm03	2	CH_gma_276	4	5	0.0000365835
Glycine max	Gm10	2	CH_gma_119	5	5	0.0000000247037
Glycine max	Gm19	2	CH_gma_275	4	5	0.0000365835
Glycine max	Gm02	3	CH_gma_303	4	4	0.0000124315
Glycine max	Gm03	3	CH_gma_358	4	5	0.0000619651
Glycine max	Gm10	3	CH_gma_158	5	5	0.0000000478392
Glycine max	Gm19	3	CH_gma_357	4	5	0.0000619651
Malus domestica	11	1	CH_mdo_70	5	10	0.000000548059
Malus domestica	7	1	CH_mdo_218	3	3	0.000471215
Malus domestica	11	2	CH_mdo_75	5	10	0.000000548059
Malus domestica	7	2	CH_mdo_263	3	3	0.000471215
Malus domestica	11	3	CH_mdo_122	5	10	0.00000142213
Malus domestica	7	3	CH_mdo_413	3	3	0.00083137
Manihot esculenta	scaffold04457	1	CH_mes_84	4	5	0.0000192168
Manihot esculenta	scaffold04457	2	CH_mes_97	4	5	0.0000192168
Manihot esculenta	scaffold04457	3	CH_mes_143	4	5	0.0000284603
Manihot esculenta	scaffold08265	3	CH_mes_144	4	5	0.0000284603
Medicago truncatula	chr1	1	CH_mtr_175	5	6	0.00000000696479
Medicago truncatula	chr4	1	CH_mtr_502	3	3	0.000376829
Medicago truncatula	chr7	1	CH_mtr_192	5	7	0.0000000243412
Medicago truncatula	chr1	2	CH_mtr_202	5	6	0.00000000696479
Medicago truncatula	chr4	2	CH_mtr_618	3	3	0.000376829
Medicago truncatula	chr7	2	CH_mtr_227	5	7	0.0000000243412
Medicago truncatula	chr1	3	CH_mtr_282	5	6	0.0000000172034
Medicago truncatula	chr4	3	CH_mtr_835	3	3	0.000645624
Medicago truncatula	chr7	3	CH_mtr_308	5	7	0.0000000601062
Oryza sativa ssp. japonica	11	1	CH_osa_213	4	7	0.000009625
Oryza sativa ssp. japonica	11	2	CH_osa_207	4	7	0.000009625
Oryza sativa ssp. japonica	11	3	CH_osa_258	4	7	0.0000144905
Populus trichocarpa	Chr02	1	CH_ptr_81	7	10	0.00000000000851644
Populus trichocarpa	Chr14	1	CH_ptr_96	6	7	0.000000000175863
Populus trichocarpa	Chr02	2	CH_ptr_98	7	10	0.00000000000851644
Populus trichocarpa	Chr14	2	CH_ptr_117	6	7	0.000000000175863
Populus trichocarpa	Chr02	3	CH_ptr_115	7	10	0.0000000000151135
Populus trichocarpa	Chr14	3	CH_ptr_145	6	7	0.00000000028705
Prunus persica	scaffold_8	1	CH_ppe_202	4	5	0.00000681562
Prunus persica	scaffold_8	2	CH_ppe_227	4	5	0.00000681562
Prunus persica	scaffold_8	3	CH_ppe_288	4	5	0.00000980585
Ricinus communis	29647	1	CH_rco_48	5	6	0.0000000159539
Ricinus communis	29647	2	CH_rco_57	5	6	0.0000000159539
Ricinus communis	29647	3	CH_rco_92	5	6	0.0000000270202
Solanum lycopersicum	ch04	1	CH_sly_18	11	11	5.78853e-24
Solanum lycopersicum	ch09	1	CH_sly_216	4	4	0.00000315234
Solanum lycopersicum	ch04	2	CH_sly_18	11	11	5.78853e-24
Solanum lycopersicum	ch09	2	CH_sly_226	4	4	0.00000315234
Solanum lycopersicum	ch04	3	CH_sly_25	11	11	1.07338e-23
Solanum lycopersicum	ch09	3	CH_sly_291	4	4	0.00000391734
Solanum lycopersicum	ch04	4	CH_sly_17	11	11	5.78853e-24
Solanum lycopersicum	ch04	5	CH_sly_17	11	11	5.78853e-24
Solanum lycopersicum	ch04	6	CH_sly_27	11	11	1.07338e-23
Solanum tuberosum	chr04	1	CH_stu_16	14	15	3.74865e-30
Solanum tuberosum	chr09	1	CH_stu_279	5	10	0.0000030078
Solanum tuberosum	chr04	2	CH_stu_16	14	15	3.74865e-30
Solanum tuberosum	chr09	2	CH_stu_299	5	10	0.0000030078
Solanum tuberosum	chr04	3	CH_stu_576	4	6	0.0000774755
Solanum tuberosum	chr04	3	CH_stu_30	14	15	1.14526e-29
Solanum tuberosum	chr09	3	CH_stu_449	5	10	0.00000440773
Solanum tuberosum	chr04	4	CH_stu_15	14	15	3.74865e-30
Solanum tuberosum	chr04	5	CH_stu_16	14	15	3.74865e-30
Solanum tuberosum	chr04	6	CH_stu_32	14	15	1.14526e-29
Thellungiella parvula	ch7-4	1	CH_tpa_25	5	5	0.0000000173357
Thellungiella parvula	ch7-4	2	CH_tpa_42	5	5	0.0000000173357
Thellungiella parvula	ch7-4	3	CH_tpa_52	5	5	0.0000000225259
Theobroma cacao	scaffold_1	1	CH_tca_176	4	5	0.000005163
Theobroma cacao	scaffold_1	2	CH_tca_188	4	5	0.000005163
Theobroma cacao	scaffold_1	3	CH_tca_244	4	5	0.00000712598

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V