PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0004806
Description: triglyceride lipase activity

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00038	1	CH_atr_35	6	9	0.00000000000219165
Amborella trichopoda	scaffold00038	2	CH_atr_34	6	9	0.00000000000345352
Amborella trichopoda	scaffold00038	3	CH_atr_27	8	10	1.33364e-17
Arabidopsis lyrata	scaffold_6	1	CH_aly_31	6	8	0.00000000000384669
Arabidopsis lyrata	scaffold_6	2	CH_aly_37	6	8	0.00000000000513874
Arabidopsis lyrata	scaffold_6	3	CH_aly_25	7	8	0.00000000000000250819
Arabidopsis thaliana	5	1	CH_ath_35	6	8	0.00000000000440021
Arabidopsis thaliana	5	2	CH_ath_53	6	8	0.00000000000440021
Arabidopsis thaliana	5	3	CH_ath_62	6	8	0.00000000000576415
Beta vulgaris	Bvchr3.sca003	1	CH_bvu_73	4	4	0.0000000740351
Beta vulgaris	Bvchr3.sca003	2	CH_bvu_84	4	4	0.0000000850033
Beta vulgaris	Bvchr3.sca003	3	CH_bvu_102	4	4	0.000000125286
Beta vulgaris	Bvchr9.sca021	3	CH_bvu_216	3	3	0.0000836989
Capsella rubella	scaffold_6	1	CH_cru_13	8	10	1.35889e-16
Capsella rubella	scaffold_6	2	CH_cru_21	8	10	1.89121e-16
Capsella rubella	scaffold_6	3	CH_cru_19	9	10	1.23596e-19
Citrullus lanatus	Chr5	1	CH_cla_80	4	5	0.000000483801
Citrullus lanatus	Chr10	3	CH_cla_223	3	3	0.000134109
Citrullus lanatus	Chr11	3	CH_cla_222	3	3	0.000134109
Citrullus lanatus	Chr9	3	CH_cla_224	3	3	0.000134109
Cucumis melo	CM3.5_scaffold00007	1	CH_cme_116	3	3	0.0000479546
Cucumis melo	CM3.5_scaffold00026	1	CH_cme_205	3	6	0.000956505
Cucumis melo	CM3.5_scaffold00029	1	CH_cme_115	3	3	0.0000479546
Cucumis melo	CM3.5_scaffold00007	2	CH_cme_139	3	3	0.0000575261
Cucumis melo	CM3.5_scaffold00029	2	CH_cme_138	3	3	0.0000575261
Cucumis melo	CM3.5_scaffold00007	3	CH_cme_244	3	3	0.0000803256
Cucumis melo	CM3.5_scaffold00029	3	CH_cme_243	3	3	0.0000803256
Eucalyptus grandis	scaffold_11	1	CH_egr_286	5	7	0.00000003614
Eucalyptus grandis	scaffold_5	1	CH_egr_421	4	6	0.0000121048
Eucalyptus grandis	scaffold_8	1	CH_egr_72	9	11	1.7031e-18
Eucalyptus grandis	scaffold_8	1	CH_egr_323	6	22	0.000000263346
Eucalyptus grandis	scaffold_8	1	CH_egr_184	6	7	0.000000000025386
Eucalyptus grandis	scaffold_9	1	CH_egr_183	6	7	0.000000000025386
Eucalyptus grandis	scaffold_5	2	CH_egr_538	4	6	0.0000134384
Eucalyptus grandis	scaffold_6	2	CH_egr_454	4	4	0.000000899094
Eucalyptus grandis	scaffold_8	2	CH_egr_237	6	7	0.0000000000297604
Eucalyptus grandis	scaffold_8	2	CH_egr_424	6	22	0.000000308493
Eucalyptus grandis	scaffold_8	2	CH_egr_104	9	11	2.17254e-18
Eucalyptus grandis	scaffold_5	3	CH_egr_430	5	6	0.0000000393944
Eucalyptus grandis	scaffold_6	3	CH_egr_555	4	4	0.00000234646
Eucalyptus grandis	scaffold_8	3	CH_egr_129	9	11	2.00577e-17
Eucalyptus grandis	scaffold_8	3	CH_egr_535	6	22	0.00000131188
Eucalyptus grandis	scaffold_8	3	CH_egr_304	6	7	0.000000000127561
Eucalyptus grandis	scaffold_9	3	CH_egr_55	14	32	1.9682e-23
Eucalyptus grandis	scaffold_8	4	CH_egr_108	15	261	0.000000000000893162
Eucalyptus grandis	scaffold_8	5	CH_egr_118	15	261	0.0000000000013554
Eucalyptus grandis	scaffold_8	6	CH_egr_153	15	261	0.0000000000551514
Eucalyptus grandis	scaffold_8	6	CH_egr_248	10	189	0.00000794244
Eucalyptus grandis	scaffold_9	6	CH_egr_53	14	32	1.9682e-23
Glycine max	Gm01	1	CH_gma_102	6	19	0.0000000316921
Glycine max	Gm06	1	CH_gma_296	3	3	0.00026648
Glycine max	Gm07	1	CH_gma_297	3	3	0.00026648
Glycine max	Gm17	1	CH_gma_137	4	4	0.000000443706
Glycine max	Gm18	1	CH_gma_295	3	3	0.00026648
Glycine max	Gm01	2	CH_gma_130	6	19	0.0000000465309
Glycine max	Gm17	2	CH_gma_169	4	4	0.000000572064
Glycine max	Gm18	2	CH_gma_372	3	3	0.000322096
Glycine max	Gm01	3	CH_gma_103	7	19	0.000000000317572
Glycine max	Gm13	3	CH_gma_443	4	11	0.00028632
Glycine max	Gm17	3	CH_gma_225	4	4	0.000000877339
Glycine max	Gm18	3	CH_gma_502	3	3	0.000443195
Gossypium raimondii	Chr07	1	CH_gra_59	6	7	0.00000000000821055
Lotus japonicus	chr2	1	CH_lja_18	4	5	0.0000000333237
Malus domestica	5	1	CH_mdo_44	4	4	0.0000000481488
Malus domestica	5	2	CH_mdo_49	4	4	0.0000000574121
Malus domestica	17	3	CH_mdo_219	3	3	0.0000935144
Malus domestica	5	3	CH_mdo_79	4	4	0.00000011655
Malus domestica	9	3	CH_mdo_166	4	9	0.0000146119
Medicago truncatula	chr6	1	CH_mtr_162	5	12	0.00000000393039
Oryza sativa ssp. japonica	1	1	CH_osa_302	3	4	0.000168714
Oryza sativa ssp. japonica	12	1	CH_osa_356	3	5	0.000421502
Oryza sativa ssp. japonica	1	2	CH_osa_326	3	4	0.000200273
Oryza sativa ssp. japonica	12	2	CH_osa_383	3	5	0.000500326
Oryza sativa ssp. japonica	1	3	CH_osa_442	3	4	0.000417792
Physcomitrella patens	scaffold_1	1	CH_ppa_37	3	3	0.0000868314
Physcomitrella patens	scaffold_1	2	CH_ppa_40	3	3	0.000113397
Physcomitrella patens	scaffold_1	3	CH_ppa_65	3	3	0.000162622
Physcomitrella patens	scaffold_102	3	CH_ppa_66	3	3	0.000162622
Populus trichocarpa	Chr14	1	CH_ptr_101	5	5	0.000000000324339
Prunus persica	scaffold_5	1	CH_ppe_290	3	4	0.000284654
Prunus persica	scaffold_7	1	CH_ppe_159	4	5	0.000000461701
Prunus persica	scaffold_5	2	CH_ppe_359	3	4	0.000332011
Prunus persica	scaffold_7	2	CH_ppe_185	4	5	0.000000568428
Prunus persica	scaffold_3	3	CH_ppe_380	3	3	0.000143609
Prunus persica	scaffold_5	3	CH_ppe_381	3	3	0.000143609
Prunus persica	scaffold_5	3	CH_ppe_200	4	4	0.000000238114
Prunus persica	scaffold_7	3	CH_ppe_113	5	5	0.000000000386243
Ricinus communis	29900	1	CH_rco_81	4	5	0.000000337053
Ricinus communis	29900	2	CH_rco_89	4	5	0.000000446488
Ricinus communis	29900	3	CH_rco_55	5	5	0.00000000022646
Ricinus communis	30115	3	CH_rco_194	3	3	0.0000946734
Solanum lycopersicum	ch02	1	CH_sly_34	10	18	3.13165e-19
Solanum lycopersicum	ch02	1	CH_sly_348	3	3	0.000205729
Solanum lycopersicum	ch02	2	CH_sly_388	3	3	0.000236546
Solanum lycopersicum	ch02	2	CH_sly_35	10	18	5.12398e-19
Solanum lycopersicum	ch02	3	CH_sly_43	10	18	9.53229e-19
Solanum lycopersicum	ch02	3	CH_sly_517	3	3	0.00028222
Solanum lycopersicum	ch02	4	CH_sly_29	10	18	3.13165e-19
Solanum lycopersicum	ch02	5	CH_sly_30	10	18	5.12398e-19
Solanum lycopersicum	ch02	6	CH_sly_38	10	18	9.53229e-19
Solanum tuberosum	chr02	1	CH_stu_35	13	33	3.08209e-23
Solanum tuberosum	chr02	1	CH_stu_435	3	3	0.00024366
Solanum tuberosum	chr02	1	CH_stu_241	4	4	0.000000450862
Solanum tuberosum	chr05	1	CH_stu_436	3	3	0.00024366
Solanum tuberosum	chr02	2	CH_stu_34	13	33	5.69993e-23
Solanum tuberosum	chr02	2	CH_stu_494	3	3	0.000277883
Solanum tuberosum	chr02	2	CH_stu_260	4	4	0.000000537919
Solanum tuberosum	chr05	2	CH_stu_495	3	3	0.000277883
Solanum tuberosum	chr02	3	CH_stu_56	13	33	3.07671e-22
Solanum tuberosum	chr02	3	CH_stu_282	5	6	0.000000011346
Solanum tuberosum	chr02	3	CH_stu_707	3	3	0.000399455
Solanum tuberosum	chr02	3	CH_stu_388	4	4	0.000000875599
Solanum tuberosum	chr05	3	CH_stu_708	3	3	0.000399455
Solanum tuberosum	chr02	4	CH_stu_26	18	108	5.32626e-26
Solanum tuberosum	chr02	5	CH_stu_27	18	108	1.29005e-25
Solanum tuberosum	chr02	6	CH_stu_47	18	108	1.44273e-24
Theobroma cacao	scaffold_1	1	CH_tca_175	4	7	0.000004501
Theobroma cacao	scaffold_6	1	CH_tca_71	5	7	0.00000000368645
Theobroma cacao	scaffold_1	2	CH_tca_189	4	7	0.00000540972
Theobroma cacao	scaffold_6	2	CH_tca_76	5	7	0.00000000465248
Theobroma cacao	scaffold_1	3	CH_tca_65	6	7	0.00000000000417196
Theobroma cacao	scaffold_6	3	CH_tca_119	5	7	0.00000000797069
Vitis vinifera	chr14	1	CH_vvi_104	5	7	0.00000000614268
Vitis vinifera	chr16	1	CH_vvi_230	3	3	0.000120406
Vitis vinifera	chr17	1	CH_vvi_172	5	18	0.00000247084
Vitis vinifera	chr5	1	CH_vvi_109	5	8	0.0000000163593
Vitis vinifera	chr14	2	CH_vvi_113	5	7	0.00000000771127
Vitis vinifera	chr16	2	CH_vvi_270	3	3	0.000137589
Vitis vinifera	chr10	3	CH_vvi_87	6	6	0.00000000000271185
Vitis vinifera	chr14	3	CH_vvi_46	8	8	1.09803e-17
Vitis vinifera	chr16	3	CH_vvi_403	3	3	0.000290366
Vitis vinifera	chr17	3	CH_vvi_139	5	6	0.00000000785188
Zea mays	10	3	CH_zma_249	3	3	0.000198782

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V