PLAZA 3.0 Dicots : Functional Clustering

Functional clusters

Information

Type: GO term
Identifier: GO:0003682
Description: chromatin binding

Cluster overview

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Amborella trichopoda	scaffold00024	1	CH_atr_165	4	5	0.000145381
Amborella trichopoda	scaffold00024	2	CH_atr_184	4	5	0.0002303
Amborella trichopoda	scaffold00024	3	CH_atr_328	4	5	0.000476102
Arabidopsis lyrata	scaffold_2	1	CH_aly_124	6	10	0.00000345832
Arabidopsis lyrata	scaffold_2	2	CH_aly_167	6	10	0.00000604415
Arabidopsis lyrata	scaffold_2	3	CH_aly_214	6	10	0.0000109792
Arabidopsis thaliana	3	3	CH_ath_402	4	4	0.00040238
Capsella rubella	scaffold_7	1	CH_cru_166	5	7	0.0000960396
Capsella rubella	scaffold_7	2	CH_cru_241	5	7	0.000151083
Capsella rubella	scaffold_7	3	CH_cru_288	5	7	0.000200993
Capsella rubella	scaffold_7	4	CH_cru_47	11	107	0.000981764
Carica papaya	supercontig_138	3	CH_cpa_116	6	9	0.00000330046
Citrullus lanatus	Chr2	1	CH_cla_98	5	6	0.0000105306
Citrullus lanatus	Chr2	2	CH_cla_114	5	6	0.000014595
Citrullus lanatus	Chr2	3	CH_cla_120	8	21	0.00000111648
Cucumis melo	CM3.5_scaffold00017	1	CH_cme_96	6	16	0.00000645665
Cucumis melo	CM3.5_scaffold00017	2	CH_cme_116	6	16	0.0000123553
Cucumis melo	CM3.5_scaffold00017	3	CH_cme_204	6	16	0.0000549595
Eucalyptus grandis	scaffold_10	1	CH_egr_186	10	22	0.0000000000267127
Eucalyptus grandis	scaffold_3	1	CH_egr_371	5	5	0.00000129902
Eucalyptus grandis	scaffold_4	1	CH_egr_457	5	7	0.0000269085
Eucalyptus grandis	scaffold_10	2	CH_egr_244	10	22	0.0000000000529797
Eucalyptus grandis	scaffold_3	2	CH_egr_480	5	5	0.00000182982
Eucalyptus grandis	scaffold_4	2	CH_egr_567	5	7	0.0000378666
Eucalyptus grandis	scaffold_10	3	CH_egr_297	10	22	0.000000000120797
Eucalyptus grandis	scaffold_3	3	CH_egr_560	5	5	0.00000276533
Eucalyptus grandis	scaffold_4	3	CH_egr_657	5	7	0.0000571532
Eucalyptus grandis	scaffold_10	4	CH_egr_118	10	22	0.0000000000267127
Eucalyptus grandis	scaffold_10	5	CH_egr_127	10	22	0.0000000000529797
Eucalyptus grandis	scaffold_10	6	CH_egr_158	10	22	0.000000000120797
Fragaria vesca	LG6	1	CH_fve_101	6	10	0.000000862979
Fragaria vesca	LG6	2	CH_fve_129	6	10	0.00000196824
Fragaria vesca	LG6	3	CH_fve_113	7	10	0.0000000189017
Glycine max	Gm06	1	CH_gma_146	7	11	0.00000067007
Glycine max	Gm06	2	CH_gma_184	7	11	0.0000010623
Glycine max	Gm06	3	CH_gma_247	7	11	0.00000186167
Gossypium raimondii	Chr13	1	CH_gra_271	4	4	0.00064881
Gossypium raimondii	Chr13	2	CH_gra_361	4	4	0.000835276
Malus domestica	15	3	CH_mdo_217	5	8	0.0000890146
Malus domestica	8	3	CH_mdo_127	5	5	0.00000162248
Medicago truncatula	chr5	1	CH_mtr_225	9	43	0.0000000993807
Medicago truncatula	chr5	1	CH_mtr_205	7	15	0.0000000470084
Medicago truncatula	chr8	1	CH_mtr_472	4	5	0.00025904
Medicago truncatula	chr8	1	CH_mtr_222	7	16	0.0000000831868
Medicago truncatula	chr5	2	CH_mtr_281	9	43	0.000000212928
Medicago truncatula	chr5	2	CH_mtr_255	7	15	0.0000000855683
Medicago truncatula	chr8	2	CH_mtr_617	4	5	0.000364802
Medicago truncatula	chr8	2	CH_mtr_273	7	16	0.00000015136
Medicago truncatula	chr3	3	CH_mtr_508	5	7	0.0000173021
Medicago truncatula	chr5	3	CH_mtr_341	7	15	0.000000221193
Medicago truncatula	chr5	3	CH_mtr_388	9	43	0.000000711104
Medicago truncatula	chr8	3	CH_mtr_824	4	5	0.000628118
Medicago truncatula	chr8	3	CH_mtr_239	8	16	0.00000000289603
Medicago truncatula	chr5	4	CH_mtr_118	10	80	0.0000012711
Medicago truncatula	chr5	5	CH_mtr_136	10	80	0.00000292602
Medicago truncatula	chr5	6	CH_mtr_180	10	80	0.0000109154
Oryza sativa ssp. japonica	6	3	CH_osa_193	6	11	0.000000968982
Populus trichocarpa	Chr17	1	CH_ptr_204	5	5	0.0000042943
Populus trichocarpa	Chr17	2	CH_ptr_239	5	5	0.00000612815
Populus trichocarpa	Chr17	3	CH_ptr_322	5	5	0.00000910394
Populus trichocarpa	Chr18	3	CH_ptr_507	5	8	0.000495014
Prunus persica	scaffold_1	1	CH_ppe_256	5	8	0.0000736558
Prunus persica	scaffold_7	1	CH_ppe_270	4	4	0.000156651
Prunus persica	scaffold_1	2	CH_ppe_307	5	8	0.00010355
Prunus persica	scaffold_7	2	CH_ppe_320	4	4	0.000205866
Prunus persica	scaffold_1	3	CH_ppe_134	7	8	0.00000000234656
Prunus persica	scaffold_6	3	CH_ppe_435	4	4	0.000294031
Prunus persica	scaffold_7	3	CH_ppe_436	4	4	0.000294031
Solanum lycopersicum	ch02	1	CH_sly_357	4	4	0.000255388
Solanum lycopersicum	ch04	1	CH_sly_356	4	4	0.000255388
Solanum lycopersicum	ch02	2	CH_sly_398	4	4	0.000336415
Solanum lycopersicum	ch04	2	CH_sly_397	4	4	0.000336415
Solanum lycopersicum	ch02	3	CH_sly_576	4	4	0.000500107
Solanum lycopersicum	ch02	3	CH_sly_451	5	7	0.000112133
Solanum lycopersicum	ch04	3	CH_sly_312	5	5	0.00000543782
Solanum lycopersicum	ch12	3	CH_sly_367	6	11	0.0000260023
Solanum tuberosum	chr03	1	CH_stu_501	4	5	0.00081597
Solanum tuberosum	chr05	1	CH_stu_500	4	5	0.00081597
Solanum tuberosum	chr07	1	CH_stu_268	5	5	0.00000134687
Solanum tuberosum	chr12	1	CH_stu_499	4	5	0.00081597
Solanum tuberosum	chr07	2	CH_stu_290	5	5	0.00000213538
Solanum tuberosum	chr07	3	CH_stu_444	5	5	0.00000402607
Theobroma cacao	scaffold_2	1	CH_tca_304	4	5	0.000762145
Theobroma cacao	scaffold_9	1	CH_tca_123	6	8	0.000000299075
Theobroma cacao	scaffold_9	2	CH_tca_135	6	8	0.000000475319
Theobroma cacao	scaffold_3	3	CH_tca_378	4	4	0.000289897
Theobroma cacao	scaffold_7	3	CH_tca_329	5	8	0.000156553
Theobroma cacao	scaffold_9	3	CH_tca_193	6	8	0.000000777267
Vitis vinifera	chr2	1	CH_vvi_62	8	8	0.00000000000205668
Vitis vinifera	chr4	1	CH_vvi_146	6	8	0.000000618116
Vitis vinifera	chr2	2	CH_vvi_65	8	8	0.00000000000343008
Vitis vinifera	chr4	2	CH_vvi_167	6	8	0.000000904822
Vitis vinifera	chr2	3	CH_vvi_90	8	8	0.00000000000618645
Vitis vinifera	chr4	3	CH_vvi_132	7	8	0.00000000446263
Zea mays	1	1	CH_zma_167	5	8	0.000130553
Zea mays	1	2	CH_zma_187	5	8	0.000170986
Zea mays	1	3	CH_zma_29	8	8	0.0000000000104123
Zea mays	3	3	CH_zma_147	5	5	0.00000737874
Zea mays	8	3	CH_zma_148	5	5	0.00000737874
Zea mays	1	6	CH_zma_42	11	86	0.000163635

Functional clusters experiments

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary and orthology projected GO data.	2	30	80	0.001	X
3	GO	All GO data.	2	30	80	0.001	X
4	GO	Primary GO data only.	10	150	300	0.001	X
5	GO	Primary and orthology projected GO data.	10	150	300	0.001	X
6	GO	All GO data.	10	150	300	0.001	X
7	GO	Primary GO data only.	2	30	80	0.001	V
8	GO	Primary and orthology projected GO data.	2	30	80	0.001	V
9	GO	All GO data.	2	30	80	0.001	V
10	GO	Primary GO data only.	10	150	300	0.001	V
11	GO	Primary and orthology projected GO data.	10	150	300	0.001	V
12	GO	All GO data.	10	150	300	0.001	V
13	InterPro	No filter applied.	2	30	80	0.001	X
14	InterPro	No filter applied.	10	150	300	0.001	X
15	InterPro	No filter applied.	2	30	80	0.001	V
16	InterPro	No filter applied.	10	150	300	0.001	V
17	MapMan	No filter applied.	2	30	80	0.001	X
18	MapMan	No filter applied.	10	150	300	0.001	X
19	MapMan	No filter applied.	2	30	80	0.001	V
20	MapMan	No filter applied.	10	150	300	0.001	V