Monocots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Sspon.03G0008810-1A	Saccharum spontaneum	HOM04x5M000061	ORTHO04x5M012972	0.0e+00	1122.8	601	100.0
Sspon.04G0033020-1C	Saccharum spontaneum	HOM04x5M000061	ORTHO04x5M000023	6.8e-75	284.6	347	57.1
Sspon.03G0005840-1A	Saccharum spontaneum	HOM04x5M000061	ORTHO04x5M000023	1.7e-38	163.7	310	37.4
Sspon.01G0044000-1B	Saccharum spontaneum	HOM04x5M000061	ORTHO04x5M014388	8.9e-35	151.4	194	43.8
Sspon.03G0046450-1D	Saccharum spontaneum	HOM04x5M000061	ORTHO04x5M014388	3.0e-30	136.3	175	47.4
Sspon.01G0036470-1B	Saccharum spontaneum	HOM04x5M000061	ORTHO04x5M000023	7.6e-26	121.7	313	40.9
Zm00008a021352	Zea mays PH207	HOM04x5M000061	ORTHO04x5M012972	1.4e-19	100.9	66	75.8
Zm00008a011595	Zea mays PH207	HOM04x5M000061	ORTHO04x5M012972	1.8e-19	100.5	166	45.2
Zm00008a036751	Zea mays PH207	HOM04x5M000061	ORTHO04x5M012972	5.1e-14	82.4	65	61.5
Sspon.01G0044010-1B	Saccharum spontaneum	HOM04x5M000061	ORTHO04x5M001111	7.4e-13	78.6	73	57.5
Zm00008a003633	Zea mays PH207	HOM04x5M000061	ORTHO04x5M012972	2.6e-10	70.1	277	27.8
Zm00008a020390	Zea mays PH207	HOM04x5M000061	ORTHO04x5M001111	1.3e-09	67.8	44	75.0
Zm00008a016182	Zea mays PH207	HOM04x5M011376	ORTHO04x5M014388	2.9e-09	66.6	74	48.6
Sspon.05G0006620-1A	Saccharum spontaneum	HOM04x5M000061	ORTHO04x5M000023	4.2e-08	62.8	226	38.5
Zm00007a00017795	Zea mays B104	HOM04x5M011376	ORTHO04x5M012972	5.5e-08	62.4	79	44.3
Zm00008a024301	Zea mays PH207	HOM04x5M000061	ORTHO04x5M012972	5.5e-08	62.4	65	52.3
Zm00001d031513	Zea mays B73	HOM04x5M012467	ORTHO04x5M015488	4.6e-07	59.3	65	47.7
Zm00008a005160	Zea mays PH207	HOM04x5M012467	ORTHO04x5M015488	4.6e-07	59.3	86	39.5
Zm00007a00006741	Zea mays B104	HOM04x5M011376	ORTHO04x5M012972	2.3e-06	57.0	133	33.8
Zm00001d041153	Zea mays B73	HOM04x5M012467	ORTHO04x5M015488	5.1e-06	55.8	94	38.3
Zm00001d041677	Zea mays B73	HOM04x5M012467	ORTHO04x5M015488	5.1e-06	55.8	86	38.4
Zm00001d036681	Zea mays B73	HOM04x5M012467	ORTHO04x5M015488	8.7e-06	55.1	86	37.2

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment