Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
PP00189G00480	Physcomitrella patens	0.0	1220	594	100.00
PP00189G00510	Physcomitrella patens	0.0	1220	594	100.00
PP00213G00010	Physcomitrella patens	0.0	1122	588	91.84
PP00090G01250	Physcomitrella patens	0.0	1122	587	96.08
PP00029G01150	Physcomitrella patens	0.0	1058	588	88.44
PP00030G00170	Physcomitrella patens	0.0	995	589	84.89
PP00112G00250	Physcomitrella patens	0.0	969	593	83.14
OS07G10770	Oryza sativa	0.0	954	591	80.37
ATR_00081G00760	Amborella trichopoda	0.0	951	589	78.10
OS03G59340	Oryza sativa	0.0	950	591	79.86
ATR_00103G00760	Amborella trichopoda	0.0	950	591	79.70
AT5G05170	Arabidopsis thaliana	0.0	940	591	77.50
ATR_00022G00640	Amborella trichopoda	0.0	927	594	78.62
OS05G08370	Oryza sativa	0.0	926	590	76.10
ATR_00137G00140	Amborella trichopoda	0.0	915	588	76.36
OS09G25490	Oryza sativa	0.0	913	590	76.44
AT5G17420	Arabidopsis thaliana	0.0	909	588	75.68
AT5G44030	Arabidopsis thaliana	0.0	907	618	72.98
OS03G62090	Oryza sativa	0.0	901	593	74.87
ATR_00067G02090	Amborella trichopoda	0.0	900	601	74.38
OS07G24190	Oryza sativa	0.0	895	593	75.55
ATR_00017G02090	Amborella trichopoda	0.0	895	590	72.88
AT2G25540	Arabidopsis thaliana	0.0	885	574	73.17
AT4G32410	Arabidopsis thaliana	0.0	885	576	73.26
OS07G14850	Oryza sativa	0.0	882	590	74.07
AT2G21770	Arabidopsis thaliana	0.0	879	590	71.02
OS01G54620	Oryza sativa	0.0	865	584	70.55
AT4G18780	Arabidopsis thaliana	0.0	864	594	69.70
ATR_00170G00010	Amborella trichopoda	0.0	852	592	70.44
AT5G64740	Arabidopsis thaliana	0.0	850	593	69.98
AT5G09870	Arabidopsis thaliana	0.0	848	591	69.71
AT4G39350	Arabidopsis thaliana	0.0	830	595	69.75
PP00059G01570	Physcomitrella patens	0.0	802	552	73.01
ATR_00045G01550	Amborella trichopoda	0.0	771	591	63.96
OS10G32980	Oryza sativa	0.0	631	381	77.95
PP00111G00250	Physcomitrella patens	0.0	589	577	52.51
ATR_00057G00940	Amborella trichopoda	0.0	567	586	49.66
PP00310G00070	Physcomitrella patens	0.0	586	577	51.30
OS06G02180	Oryza sativa	0.0	583	578	50.69
OS10G42750	Oryza sativa	0.0	580	580	50.34
AT5G16910	Arabidopsis thaliana	0.0	581	580	51.72
AT1G02730	Arabidopsis thaliana	0.0	580	580	51.21
PP00057G00480	Physcomitrella patens	0.0	578	577	51.30
ATR_00048G00590	Amborella trichopoda	0.0	577	579	50.43
AT3G03050	Arabidopsis thaliana	0.0	577	578	51.04
PP00243G00060	Physcomitrella patens	0.0	577	577	51.47
PP00243G00010	Physcomitrella patens	0.0	572	584	50.68
ATR_00022G01210	Amborella trichopoda	0.0	571	578	50.69
PP00269G00120	Physcomitrella patens	0.0	570	577	49.74
ATR_00019G03800	Amborella trichopoda	0.0	566	577	52.34
PP00068G00840	Physcomitrella patens	0.0	568	578	50.35
PP00111G00180	Physcomitrella patens	0.0	570	577	50.95
ATR_00002G02960	Amborella trichopoda	0.0	549	402	65.67
AT2G33100	Arabidopsis thaliana	0.0	559	578	48.62
AT1G32180	Arabidopsis thaliana	0.0	548	577	49.39
OS12G36890	Oryza sativa	0.0	553	596	49.66
AT4G38190	Arabidopsis thaliana	9e-180	545	583	47.51
OS06G22980	Oryza sativa	5e-177	535	622	46.62
OS06G39970	Oryza sativa	2e-160	488	611	44.52
OS08G25710	Oryza sativa	6e-156	483	601	45.26
PP00008G00780	Physcomitrella patens	8e-136	422	280	76.79
OS08G06380	Oryza sativa	7e-135	424	573	41.36
OS07G36610	Oryza sativa	1e-124	395	564	40.43
OS07G36630	Oryza sativa	6e-121	385	553	38.52
OS07G36740	Oryza sativa	6e-102	335	550	36.18
OS07G36750	Oryza sativa	3e-101	333	594	35.19
OS07G36700	Oryza sativa	2e-82	282	552	33.15
ATR_00002G02970	Amborella trichopoda	3e-79	254	189	70.90
OS07G36690	Oryza sativa	4e-79	273	552	33.51
ATR_00017G01730	Amborella trichopoda	5e-79	271	538	35.32
OS10G20260	Oryza sativa	5e-79	272	339	43.07
ATR_00017G00080	Amborella trichopoda	2e-78	268	560	32.86
AT2G32610	Arabidopsis thaliana	3e-63	228	583	29.33
AT4G15290	Arabidopsis thaliana	8e-62	223	553	31.10
AT2G32620	Arabidopsis thaliana	1e-60	220	554	29.96
PP00015G00170	Physcomitrella patens	9e-58	195	102	88.24
OS04G35020	Oryza sativa	2e-55	205	509	29.86
AT2G32530	Arabidopsis thaliana	9e-54	200	574	28.57
AT2G32540	Arabidopsis thaliana	5e-53	198	587	28.45
ATR_00061G02330	Amborella trichopoda	5e-46	175	335	30.45
ATR_00061G02350	Amborella trichopoda	2e-43	169	322	29.81
AT4G23990	Arabidopsis thaliana	4e-43	168	313	32.59
OS12G29300	Oryza sativa	1e-42	158	136	57.35
AT4G24000	Arabidopsis thaliana	4e-42	165	299	31.44
AT4G24010	Arabidopsis thaliana	1e-41	164	305	30.82
ATR_00021G02120	Amborella trichopoda	2e-41	163	329	31.91
OS09G30120	Oryza sativa	5e-36	147	132	47.73
AT1G55850	Arabidopsis thaliana	2e-35	145	134	51.49
OS09G30130	Oryza sativa	7e-35	144	146	43.84
OS10G20090	Oryza sativa	2e-33	140	385	28.31
OS02G49332	Oryza sativa	2e-33	140	132	46.97
PP00120G00840	Physcomitrella patens	4e-33	127	85	75.29
AT4G15320	Arabidopsis thaliana	2e-28	124	399	29.07
ATR_00017G00110	Amborella trichopoda	8e-24	109	140	39.29
OS09G30105	Oryza sativa	1e-21	100	97	45.36
OS04G35030	Oryza sativa	2e-21	100	120	45.00
ATR_00067G02080	Amborella trichopoda	1e-16	82.8	45	77.78
Naga_100079g22	Nannochloropsis gaditana	4e-11	69.7	202	27.23
ccr65060	Chondrus crispus	7e-09	62.8	297	23.23
RCC4223.02g07700	Picochlorum_RCC4223	1e-08	61.6	218	27.52
ES0231G00120	Ectocarpus siliculosus	6e-08	59.7	183	24.59
Naga_100049g27	Nannochloropsis gaditana	7e-08	59.7	202	25.74
ccr122880	Chondrus crispus	8e-08	59.7	297	24.58
PP00213G00500	Physcomitrella patens	1e-07	54.7	66	36.36
DDB_G0269124	Dictyostelium discoideum	3e-07	57.8	110	38.18
PI00G60790	Picochlorum sp. SENEW3 (SE3)	1e-06	55.8	291	25.43
ES0231G00040	Ectocarpus siliculosus	6e-06	53.5	185	24.86

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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