Pico-PLAZA 3.0 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS12G29300	Oryza sativa	2e-177	495	245	100.00
OS10G20260	Oryza sativa	4e-91	292	171	85.96
OS07G36630	Oryza sativa	9e-59	204	173	58.96
OS07G36610	Oryza sativa	5e-57	199	183	55.74
OS07G36740	Oryza sativa	7e-57	199	171	59.06
OS08G06380	Oryza sativa	2e-54	192	170	59.41
ATR_00048G00590	Amborella trichopoda	5e-54	192	169	56.21
OS07G36700	Oryza sativa	5e-54	191	172	56.98
PP00310G00070	Physcomitrella patens	5e-54	192	173	54.34
OS07G36690	Oryza sativa	8e-54	190	172	56.98
PP00111G00250	Physcomitrella patens	9e-54	192	173	53.18
AT3G03050	Arabidopsis thaliana	1e-53	192	169	55.62
ATR_00022G01210	Amborella trichopoda	1e-53	191	179	53.63
ATR_00057G00940	Amborella trichopoda	2e-53	187	171	54.97
PP00243G00010	Physcomitrella patens	2e-53	191	174	52.87
PP00111G00180	Physcomitrella patens	5e-53	190	171	54.39
AT5G16910	Arabidopsis thaliana	7e-53	189	169	54.44
AT1G32180	Arabidopsis thaliana	1e-52	188	168	54.76
OS12G36890	Oryza sativa	1e-52	189	184	54.35
PP00243G00060	Physcomitrella patens	2e-52	188	171	53.80
AT1G02730	Arabidopsis thaliana	2e-52	188	187	51.34
OS10G42750	Oryza sativa	3e-52	187	169	55.03
PP00068G00840	Physcomitrella patens	3e-52	187	171	52.63
OS06G02180	Oryza sativa	7e-52	186	179	51.96
PP00269G00120	Physcomitrella patens	9e-52	186	171	52.05
OS08G25710	Oryza sativa	3e-51	184	169	50.89
PP00057G00480	Physcomitrella patens	1e-49	180	172	51.16
AT4G38190	Arabidopsis thaliana	9e-49	177	168	52.38
ATR_00019G03800	Amborella trichopoda	1e-48	177	169	53.25
OS07G36750	Oryza sativa	2e-47	172	172	50.00
AT5G09870	Arabidopsis thaliana	4e-47	172	146	54.79
OS06G22980	Oryza sativa	6e-47	172	170	48.24
AT2G33100	Arabidopsis thaliana	2e-46	171	146	52.74
OS03G62090	Oryza sativa	1e-45	169	148	54.73
AT5G44030	Arabidopsis thaliana	3e-45	167	146	53.42
AT2G21770	Arabidopsis thaliana	3e-45	167	148	53.38
ATR_00067G02090	Amborella trichopoda	4e-45	167	149	53.69
PP00008G00780	Physcomitrella patens	4e-45	165	146	54.79
AT5G17420	Arabidopsis thaliana	7e-45	166	149	55.03
ATR_00045G01550	Amborella trichopoda	9e-45	166	136	55.88
ATR_00170G00010	Amborella trichopoda	1e-44	165	136	58.09
AT5G64740	Arabidopsis thaliana	3e-44	164	148	54.73
AT4G18780	Arabidopsis thaliana	4e-44	164	141	58.16
OS10G32980	Oryza sativa	5e-44	164	141	56.03
PP00112G00250	Physcomitrella patens	8e-44	163	136	58.09
ATR_00022G00640	Amborella trichopoda	2e-43	162	148	55.41
ATR_00137G00140	Amborella trichopoda	2e-43	162	150	54.67
PP00213G00010	Physcomitrella patens	2e-43	161	145	55.86
OS07G14850	Oryza sativa	3e-43	162	137	57.66
OS07G24190	Oryza sativa	3e-43	161	148	54.73
PP00029G01150	Physcomitrella patens	5e-43	161	136	58.09
AT5G05170	Arabidopsis thaliana	5e-43	161	136	57.35
PP00090G01250	Physcomitrella patens	6e-43	161	145	55.86
PP00189G00480	Physcomitrella patens	6e-43	158	136	57.35
PP00189G00510	Physcomitrella patens	6e-43	158	136	57.35
OS09G25490	Oryza sativa	4e-42	158	142	55.63
OS01G54620	Oryza sativa	7e-42	157	136	58.82
AT4G39350	Arabidopsis thaliana	3e-41	156	134	56.72
ATR_00017G02090	Amborella trichopoda	7e-41	155	136	56.62
ATR_00103G00760	Amborella trichopoda	1e-40	154	136	55.15
PP00059G01570	Physcomitrella patens	1e-40	151	147	53.06
OS07G10770	Oryza sativa	1e-40	154	136	55.15
PP00030G00170	Physcomitrella patens	2e-40	153	145	53.79
OS03G59340	Oryza sativa	2e-40	153	136	55.88
ATR_00081G00760	Amborella trichopoda	5e-40	152	134	55.97
AT2G25540	Arabidopsis thaliana	2e-39	150	134	52.99
AT4G32410	Arabidopsis thaliana	4e-39	150	134	52.99
OS05G08370	Oryza sativa	7e-38	146	134	54.48
ATR_00002G02960	Amborella trichopoda	9e-37	141	131	53.44
AT1G55850	Arabidopsis thaliana	3e-25	108	129	44.96
OS06G39970	Oryza sativa	9e-25	107	134	46.27
AT4G24010	Arabidopsis thaliana	2e-23	103	131	39.69
AT4G24000	Arabidopsis thaliana	1e-22	101	131	39.69
ATR_00017G01730	Amborella trichopoda	2e-22	100	133	40.60
ATR_00017G00080	Amborella trichopoda	4e-22	99.8	131	39.69
OS09G30120	Oryza sativa	2e-21	98.2	130	39.23
AT4G23990	Arabidopsis thaliana	2e-21	97.4	131	37.40
ATR_00021G02120	Amborella trichopoda	3e-21	97.4	131	41.22
ATR_00061G02330	Amborella trichopoda	5e-21	95.9	130	40.00
OS02G49332	Oryza sativa	1e-20	95.5	163	35.58
OS10G20090	Oryza sativa	7e-20	93.2	137	37.96
AT4G15290	Arabidopsis thaliana	7e-20	93.2	133	36.09
OS09G30130	Oryza sativa	1e-19	92.4	162	35.80
AT2G32540	Arabidopsis thaliana	6e-19	90.5	135	36.30
AT2G32530	Arabidopsis thaliana	3e-18	88.2	135	34.07
ATR_00061G02350	Amborella trichopoda	6e-18	87.4	132	38.64
AT2G32620	Arabidopsis thaliana	2e-17	85.5	156	33.33
AT2G32610	Arabidopsis thaliana	3e-16	82.0	144	31.94
PP00015G00170	Physcomitrella patens	9e-15	72.4	90	45.56
OS04G35020	Oryza sativa	2e-14	76.6	116	37.07
OS09G30105	Oryza sativa	2e-14	74.7	107	38.32
AT4G15320	Arabidopsis thaliana	4e-13	72.4	105	35.24
PP00120G00840	Physcomitrella patens	1e-11	63.9	73	49.32
OS04G35030	Oryza sativa	3e-11	66.2	147	30.61
PI00G60790	Picochlorum sp. SENEW3 (SE3)	2e-09	61.6	216	29.63
ATR_00067G02080	Amborella trichopoda	4e-07	52.0	33	60.61
ATR_00057G00930	Amborella trichopoda	1e-06	53.1	50	56.00
OS06G11050	Oryza sativa	3e-06	51.6	82	43.90
OS02G43440	Oryza sativa	3e-06	50.4	48	54.17
Naga_100079g22	Nannochloropsis gaditana	4e-06	51.6	128	32.81
ccr122880	Chondrus crispus	5e-06	51.2	155	32.26

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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