Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS09G30130	Oryza sativa	0.0	1518	729	100.00
OS09G30120	Oryza sativa	0.0	1308	723	85.62
OS02G49332	Oryza sativa	0.0	864	728	57.55
ATR_00061G02350	Amborella trichopoda	0.0	805	731	52.80
AT1G55850	Arabidopsis thaliana	0.0	722	729	49.66
ATR_00061G02330	Amborella trichopoda	0.0	619	530	54.34
ATR_00021G02120	Amborella trichopoda	3e-174	525	725	39.03
AT4G23990	Arabidopsis thaliana	2e-169	513	709	39.07
AT4G24000	Arabidopsis thaliana	8e-166	502	692	38.15
AT4G24010	Arabidopsis thaliana	2e-165	503	696	39.08
OS09G25490	Oryza sativa	2e-126	409	748	32.35
ATR_00017G00080	Amborella trichopoda	6e-126	397	688	33.58
AT5G17420	Arabidopsis thaliana	4e-125	405	782	31.84
ATR_00137G00140	Amborella trichopoda	6e-125	405	801	30.84
ATR_00017G01730	Amborella trichopoda	2e-120	385	738	33.06
OS05G08370	Oryza sativa	4e-119	390	784	32.14
OS10G20090	Oryza sativa	6e-117	376	710	34.23
AT2G32540	Arabidopsis thaliana	7e-116	373	721	32.18
AT2G32530	Arabidopsis thaliana	1e-115	372	762	31.36
ATR_00045G01550	Amborella trichopoda	4e-112	370	774	30.88
ATR_00170G00010	Amborella trichopoda	4e-112	367	685	32.70
AT4G15290	Arabidopsis thaliana	3e-108	353	732	31.69
AT2G32620	Arabidopsis thaliana	2e-106	348	726	31.54
AT2G32610	Arabidopsis thaliana	4e-105	345	736	31.39
OS07G36630	Oryza sativa	7e-96	323	739	29.09
OS10G20260	Oryza sativa	8e-94	316	611	33.22
AT4G15320	Arabidopsis thaliana	3e-93	315	741	29.55
OS07G36610	Oryza sativa	1e-92	315	740	29.73
OS07G36700	Oryza sativa	9e-91	308	687	30.57
PP00310G00070	Physcomitrella patens	5e-90	311	797	28.61
OS07G36690	Oryza sativa	2e-89	306	688	29.94
OS07G36750	Oryza sativa	2e-89	305	799	28.16
AT5G44030	Arabidopsis thaliana	8e-84	293	393	39.69
PP00008G00780	Physcomitrella patens	1e-83	288	344	42.44
PP00112G00250	Physcomitrella patens	2e-83	292	366	40.98
AT5G05170	Arabidopsis thaliana	4e-83	291	379	40.90
PP00213G00010	Physcomitrella patens	1e-82	288	379	38.79
AT4G39350	Arabidopsis thaliana	1e-82	290	376	40.96
PP00030G00170	Physcomitrella patens	1e-82	289	379	39.31
OS07G36740	Oryza sativa	2e-82	286	702	28.63
ATR_00017G02090	Amborella trichopoda	3e-82	288	345	42.90
AT5G09870	Arabidopsis thaliana	4e-82	288	374	40.37
OS01G54620	Oryza sativa	6e-82	286	362	41.16
ATR_00022G00640	Amborella trichopoda	7e-82	287	373	39.95
OS07G14850	Oryza sativa	9e-82	287	373	40.48
ATR_00103G00760	Amborella trichopoda	1e-81	287	376	40.43
AT4G18780	Arabidopsis thaliana	1e-81	286	365	41.37
OS10G32980	Oryza sativa	1e-81	286	365	39.45
PP00090G01250	Physcomitrella patens	1e-81	286	379	39.31
PP00029G01150	Physcomitrella patens	2e-81	286	365	39.73
OS03G59340	Oryza sativa	3e-81	286	378	39.42
AT2G21770	Arabidopsis thaliana	3e-81	286	376	41.22
ATR_00067G02090	Amborella trichopoda	5e-81	284	365	39.45
OS04G35020	Oryza sativa	8e-81	280	719	28.51
OS07G10770	Oryza sativa	1e-80	284	376	39.89
AT2G25540	Arabidopsis thaliana	1e-80	283	363	41.32
AT5G64740	Arabidopsis thaliana	2e-80	283	373	40.21
OS03G62090	Oryza sativa	2e-80	283	373	39.68
OS07G24190	Oryza sativa	2e-79	280	373	39.41
ATR_00081G00760	Amborella trichopoda	2e-79	280	361	41.83
AT4G32410	Arabidopsis thaliana	7e-79	278	365	40.82
ATR_00017G00110	Amborella trichopoda	2e-78	268	512	31.84
ATR_00002G02960	Amborella trichopoda	6e-76	265	365	37.26
AT1G02730	Arabidopsis thaliana	6e-73	261	454	37.44
PP00243G00060	Physcomitrella patens	1e-71	258	431	36.66
AT3G03050	Arabidopsis thaliana	2e-71	257	398	38.94
PP00111G00250	Physcomitrella patens	5e-71	256	399	37.84
AT1G32180	Arabidopsis thaliana	8e-71	254	447	33.56
PP00111G00180	Physcomitrella patens	1e-70	255	405	36.54
ATR_00048G00590	Amborella trichopoda	1e-70	255	398	38.94
PP00243G00010	Physcomitrella patens	3e-70	254	401	37.91
PP00269G00120	Physcomitrella patens	6e-70	253	433	35.33
PP00057G00480	Physcomitrella patens	1e-69	252	412	36.65
OS09G30105	Oryza sativa	3e-69	236	194	61.34
AT5G16910	Arabidopsis thaliana	4e-69	250	426	37.09
OS06G02180	Oryza sativa	6e-69	250	401	37.16
ATR_00022G01210	Amborella trichopoda	7e-69	250	428	37.15
OS10G42750	Oryza sativa	5e-68	247	462	34.42
AT4G38190	Arabidopsis thaliana	1e-67	246	400	34.75
OS08G25710	Oryza sativa	2e-67	245	424	34.43
AT2G33100	Arabidopsis thaliana	3e-64	235	438	32.42
OS06G39970	Oryza sativa	5e-63	231	373	37.00
PP00068G00840	Physcomitrella patens	1e-62	231	350	37.14
OS06G22980	Oryza sativa	2e-62	230	433	32.33
OS08G06380	Oryza sativa	9e-61	224	429	34.50
ATR_00019G03800	Amborella trichopoda	6e-60	223	491	31.77
OS04G35030	Oryza sativa	1e-49	184	230	41.30
ATR_00057G00930	Amborella trichopoda	2e-35	145	255	38.04
PP00189G00480	Physcomitrella patens	8e-35	144	146	43.84
PP00189G00510	Physcomitrella patens	8e-35	144	146	43.84
OS12G36890	Oryza sativa	9e-34	143	189	38.10
PP00059G01570	Physcomitrella patens	1e-30	130	153	38.56
ATR_00057G00940	Amborella trichopoda	2e-29	127	154	40.91
ATR_00061G02320	Amborella trichopoda	5e-24	102	76	59.21
PP00059G01580	Physcomitrella patens	2e-22	102	125	35.20
PP00015G00170	Physcomitrella patens	2e-19	89.7	100	38.00
OS12G29300	Oryza sativa	3e-19	92.4	162	35.80
OS07G36680	Oryza sativa	8e-12	69.7	71	43.66
PP00120G00840	Physcomitrella patens	4e-11	66.2	68	44.12
PI00G34600	Picochlorum sp. SENEW3 (SE3)	5e-11	70.9	423	23.40
RCC4223.10g00870	Picochlorum_RCC4223	2e-10	68.6	415	23.37
CV00G01670	Coccomyxa subellipsoidea C-169	1e-07	59.3	408	21.81
ATR_00067G02080	Amborella trichopoda	2e-06	52.0	44	40.91

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment