Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
OS07G36750	Oryza sativa	0.0	1802	869	100.00
OS07G36630	Oryza sativa	0.0	1051	815	60.25
OS07G36740	Oryza sativa	0.0	1006	823	61.36
OS07G36690	Oryza sativa	0.0	1003	846	58.87
OS07G36700	Oryza sativa	0.0	1001	819	59.83
OS07G36610	Oryza sativa	0.0	983	849	57.36
OS06G02180	Oryza sativa	0.0	762	863	44.61
ATR_00048G00590	Amborella trichopoda	0.0	751	862	45.24
OS10G42750	Oryza sativa	0.0	751	867	43.94
PP00057G00480	Physcomitrella patens	0.0	751	867	44.06
AT5G16910	Arabidopsis thaliana	0.0	741	860	43.49
PP00111G00180	Physcomitrella patens	0.0	739	868	43.89
AT3G03050	Arabidopsis thaliana	0.0	738	863	43.11
ATR_00022G01210	Amborella trichopoda	0.0	734	849	44.29
PP00111G00250	Physcomitrella patens	0.0	732	867	43.37
PP00243G00060	Physcomitrella patens	0.0	731	868	43.43
AT4G38190	Arabidopsis thaliana	0.0	728	862	43.97
PP00310G00070	Physcomitrella patens	0.0	729	862	43.39
ATR_00019G03800	Amborella trichopoda	0.0	724	859	43.54
AT1G02730	Arabidopsis thaliana	0.0	725	875	44.23
PP00269G00120	Physcomitrella patens	0.0	724	867	42.79
AT1G32180	Arabidopsis thaliana	0.0	711	865	42.66
AT2G33100	Arabidopsis thaliana	0.0	709	861	42.39
OS12G36890	Oryza sativa	0.0	698	900	43.44
OS06G22980	Oryza sativa	0.0	681	867	41.98
OS08G25710	Oryza sativa	0.0	660	860	41.05
OS10G20260	Oryza sativa	0.0	613	815	42.82
OS08G06380	Oryza sativa	0.0	589	463	61.12
OS09G25490	Oryza sativa	0.0	568	836	39.11
PP00213G00010	Physcomitrella patens	0.0	556	890	37.30
ATR_00137G00140	Amborella trichopoda	0.0	556	838	38.78
AT5G05170	Arabidopsis thaliana	1e-180	556	853	38.22
AT5G17420	Arabidopsis thaliana	2e-180	554	840	37.86
AT5G09870	Arabidopsis thaliana	5e-180	555	864	37.62
OS03G59340	Oryza sativa	1e-179	554	852	38.15
AT2G21770	Arabidopsis thaliana	7e-178	550	864	37.38
ATR_00081G00760	Amborella trichopoda	2e-177	548	854	38.29
AT4G18780	Arabidopsis thaliana	3e-175	540	830	37.71
AT2G25540	Arabidopsis thaliana	2e-173	537	852	37.21
OS05G08370	Oryza sativa	4e-173	537	851	38.07
ATR_00045G01550	Amborella trichopoda	9e-169	524	851	36.31
ATR_00017G02090	Amborella trichopoda	5e-168	524	865	37.57
PP00243G00010	Physcomitrella patens	2e-150	480	449	51.22
ATR_00057G00940	Amborella trichopoda	1e-141	440	564	42.20
PP00068G00840	Physcomitrella patens	2e-133	434	447	48.77
PP00090G01250	Physcomitrella patens	3e-114	381	894	31.88
AT5G64740	Arabidopsis thaliana	5e-111	372	435	44.83
PP00008G00780	Physcomitrella patens	2e-110	363	430	44.42
AT4G39350	Arabidopsis thaliana	2e-109	368	429	44.76
PP00112G00250	Physcomitrella patens	1e-108	366	431	44.55
ATR_00067G02090	Amborella trichopoda	2e-107	361	438	43.61
PP00029G01150	Physcomitrella patens	3e-107	362	431	44.08
OS03G62090	Oryza sativa	4e-107	362	435	43.45
OS07G24190	Oryza sativa	7e-107	361	435	43.68
ATR_00170G00010	Amborella trichopoda	1e-106	357	424	44.10
OS10G32980	Oryza sativa	7e-106	358	433	44.11
OS07G14850	Oryza sativa	3e-105	357	435	42.76
ATR_00022G00640	Amborella trichopoda	3e-105	357	520	39.62
ATR_00002G02960	Amborella trichopoda	1e-104	345	426	43.66
OS01G54620	Oryza sativa	2e-104	352	443	44.24
ATR_00103G00760	Amborella trichopoda	2e-104	354	527	40.04
OS07G10770	Oryza sativa	6e-104	353	432	43.75
AT5G44030	Arabidopsis thaliana	1e-103	351	429	42.42
AT4G32410	Arabidopsis thaliana	2e-103	351	469	42.43
PP00030G00170	Physcomitrella patens	1e-102	349	430	43.02
ATR_00017G01730	Amborella trichopoda	3e-95	322	667	30.88
OS10G20090	Oryza sativa	3e-94	319	685	32.41
AT1G55850	Arabidopsis thaliana	7e-91	309	704	31.25
ATR_00017G00080	Amborella trichopoda	1e-90	308	710	29.58
OS09G30130	Oryza sativa	4e-89	305	799	28.16
AT2G32530	Arabidopsis thaliana	2e-87	300	756	29.37
OS09G30120	Oryza sativa	4e-87	299	790	27.09
AT2G32620	Arabidopsis thaliana	2e-86	298	657	31.66
ATR_00061G02350	Amborella trichopoda	1e-83	290	686	28.86
OS06G39970	Oryza sativa	1e-83	292	438	40.41
PP00059G01570	Physcomitrella patens	1e-82	281	574	34.49
AT2G32540	Arabidopsis thaliana	3e-82	286	718	29.39
OS02G49332	Oryza sativa	1e-79	278	744	27.28
AT4G24010	Arabidopsis thaliana	7e-79	277	733	28.10
ATR_00057G00930	Amborella trichopoda	8e-79	272	295	47.12
AT2G32610	Arabidopsis thaliana	1e-78	276	799	27.91
ATR_00021G02120	Amborella trichopoda	3e-76	269	684	29.68
AT4G15290	Arabidopsis thaliana	2e-74	265	699	27.47
AT4G24000	Arabidopsis thaliana	4e-74	263	723	28.22
AT4G23990	Arabidopsis thaliana	1e-72	259	665	27.22
AT4G15320	Arabidopsis thaliana	4e-67	244	648	29.01
PP00189G00480	Physcomitrella patens	5e-57	211	364	34.89
PP00189G00510	Physcomitrella patens	5e-57	211	364	34.89
ATR_00061G02330	Amborella trichopoda	3e-54	201	506	27.27
OS04G35020	Oryza sativa	4e-51	196	464	31.25
OS12G29300	Oryza sativa	7e-47	172	172	50.00
ATR_00017G00110	Amborella trichopoda	4e-38	154	315	32.38
OS04G35030	Oryza sativa	1e-35	145	386	29.53
PP00059G01580	Physcomitrella patens	1e-29	124	192	38.02
OS07G36680	Oryza sativa	2e-28	119	84	69.05
OS09G30105	Oryza sativa	2e-18	91.7	162	33.95
PP00015G00170	Physcomitrella patens	7e-18	86.3	84	47.62
ATR_00061G02320	Amborella trichopoda	4e-14	74.7	72	45.83
ATR_00002G02970	Amborella trichopoda	3e-13	74.3	176	32.39
PP00120G00840	Physcomitrella patens	9e-13	71.2	64	50.00
ES0231G00120	Ectocarpus siliculosus	2e-12	75.1	373	21.18
OS06G11050	Oryza sativa	8e-12	72.0	60	60.00
ATR_00067G02080	Amborella trichopoda	2e-08	59.3	42	54.76
PP00213G00500	Physcomitrella patens	5e-08	56.6	88	35.23
DDB_G0269124	Dictyostelium discoideum	6e-08	60.8	178	26.40
Naga_100049g27	Nannochloropsis gaditana	4e-07	57.8	264	22.73

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment