Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
ATR_00002G02960	Amborella trichopoda	0.0	1430	687	100.00
ATR_00081G00760	Amborella trichopoda	0.0	1058	673	74.44
AT4G32410	Arabidopsis thaliana	0.0	1015	656	72.71
AT2G25540	Arabidopsis thaliana	0.0	1008	633	73.14
OS05G08370	Oryza sativa	0.0	1007	679	72.02
OS07G10770	Oryza sativa	0.0	974	675	69.48
ATR_00103G00760	Amborella trichopoda	0.0	974	683	67.64
OS03G59340	Oryza sativa	0.0	971	675	69.48
AT5G05170	Arabidopsis thaliana	0.0	965	642	69.94
PP00029G01150	Physcomitrella patens	0.0	940	660	68.48
PP00213G00010	Physcomitrella patens	0.0	939	642	68.85
PP00030G00170	Physcomitrella patens	0.0	934	655	68.24
ATR_00170G00010	Amborella trichopoda	0.0	933	639	69.95
AT5G44030	Arabidopsis thaliana	0.0	928	656	66.31
ATR_00022G00640	Amborella trichopoda	0.0	926	661	67.62
PP00090G01250	Physcomitrella patens	0.0	926	651	68.05
ATR_00067G02090	Amborella trichopoda	0.0	924	647	68.16
OS03G62090	Oryza sativa	0.0	924	646	67.18
OS09G25490	Oryza sativa	0.0	921	642	68.38
AT4G18780	Arabidopsis thaliana	0.0	920	644	68.63
OS07G24190	Oryza sativa	0.0	919	646	67.96
PP00112G00250	Physcomitrella patens	0.0	919	686	64.29
OS01G54620	Oryza sativa	0.0	916	641	68.95
AT5G64740	Arabidopsis thaliana	0.0	912	643	67.19
OS07G14850	Oryza sativa	0.0	910	645	66.82
ATR_00137G00140	Amborella trichopoda	0.0	908	642	67.29
AT5G09870	Arabidopsis thaliana	0.0	901	661	65.51
AT2G21770	Arabidopsis thaliana	0.0	900	643	66.72
ATR_00017G02090	Amborella trichopoda	0.0	899	662	66.92
AT4G39350	Arabidopsis thaliana	0.0	894	652	66.26
AT5G17420	Arabidopsis thaliana	0.0	894	642	66.20
OS10G32980	Oryza sativa	0.0	894	679	64.51
ATR_00045G01550	Amborella trichopoda	0.0	823	647	60.43
PP00008G00780	Physcomitrella patens	0.0	707	528	63.64
OS06G39970	Oryza sativa	0.0	657	659	51.59
AT3G03050	Arabidopsis thaliana	0.0	617	739	46.01
AT2G33100	Arabidopsis thaliana	0.0	611	707	47.38
ATR_00048G00590	Amborella trichopoda	0.0	613	715	46.29
PP00111G00250	Physcomitrella patens	0.0	613	710	47.18
AT4G38190	Arabidopsis thaliana	0.0	608	723	47.16
OS06G02180	Oryza sativa	0.0	608	708	47.32
AT5G16910	Arabidopsis thaliana	0.0	607	695	47.34
AT1G02730	Arabidopsis thaliana	0.0	606	709	47.11
OS12G36890	Oryza sativa	0.0	605	731	45.42
OS10G42750	Oryza sativa	0.0	601	710	47.04
PP00310G00070	Physcomitrella patens	0.0	602	745	45.37
ATR_00022G01210	Amborella trichopoda	0.0	601	703	47.08
PP00269G00120	Physcomitrella patens	0.0	598	708	45.90
PP00243G00010	Physcomitrella patens	0.0	598	712	46.63
PP00057G00480	Physcomitrella patens	0.0	597	705	46.95
ATR_00019G03800	Amborella trichopoda	0.0	592	704	48.44
AT1G32180	Arabidopsis thaliana	0.0	588	710	45.35
PP00111G00180	Physcomitrella patens	0.0	592	709	45.70
PP00243G00060	Physcomitrella patens	0.0	588	709	45.84
OS08G25710	Oryza sativa	0.0	578	697	46.20
OS06G22980	Oryza sativa	0.0	569	714	44.40
PP00068G00840	Physcomitrella patens	1e-176	542	705	43.40
PP00189G00480	Physcomitrella patens	3e-173	515	404	65.35
PP00189G00510	Physcomitrella patens	3e-173	515	404	65.35
OS08G06380	Oryza sativa	8e-162	498	704	41.62
PP00059G01570	Physcomitrella patens	2e-160	480	410	60.00
OS07G36630	Oryza sativa	7e-157	483	676	40.09
OS07G36740	Oryza sativa	4e-144	450	696	37.79
OS10G20260	Oryza sativa	2e-143	446	671	40.24
OS07G36690	Oryza sativa	3e-125	400	695	36.26
OS07G36700	Oryza sativa	2e-124	397	695	36.26
OS07G36610	Oryza sativa	3e-119	384	699	35.91
ATR_00057G00940	Amborella trichopoda	1e-113	361	396	48.74
ATR_00017G01730	Amborella trichopoda	5e-110	357	618	35.60
AT2G32530	Arabidopsis thaliana	1e-106	347	642	33.64
ATR_00017G00080	Amborella trichopoda	1e-105	343	566	35.51
AT2G32620	Arabidopsis thaliana	3e-105	344	593	33.90
OS07G36750	Oryza sativa	3e-104	344	426	43.66
AT2G32540	Arabidopsis thaliana	1e-101	334	603	33.17
AT2G32610	Arabidopsis thaliana	3e-101	333	627	32.38
AT4G15290	Arabidopsis thaliana	1e-100	332	590	34.92
OS10G20090	Oryza sativa	6e-98	324	606	33.83
AT4G15320	Arabidopsis thaliana	1e-89	304	713	30.43
ATR_00061G02350	Amborella trichopoda	9e-80	275	404	37.38
AT1G55850	Arabidopsis thaliana	9e-77	266	384	39.06
OS09G30120	Oryza sativa	9e-77	267	365	37.81
OS02G49332	Oryza sativa	1e-76	267	384	38.28
ATR_00021G02120	Amborella trichopoda	4e-76	265	346	41.62
OS09G30130	Oryza sativa	6e-76	265	365	37.26
OS04G35020	Oryza sativa	1e-75	265	596	31.71
ATR_00057G00930	Amborella trichopoda	9e-69	241	302	46.03
AT4G24010	Arabidopsis thaliana	3e-67	241	387	35.66
AT4G23990	Arabidopsis thaliana	8e-66	237	340	38.24
PP00059G01580	Physcomitrella patens	4e-64	219	169	61.54
AT4G24000	Arabidopsis thaliana	3e-63	229	386	36.01
ATR_00017G00110	Amborella trichopoda	3e-55	202	262	41.22
OS04G35030	Oryza sativa	2e-39	154	356	30.34
PP00015G00170	Physcomitrella patens	2e-37	140	100	68.00
OS12G29300	Oryza sativa	3e-36	141	131	53.44
ATR_00061G02330	Amborella trichopoda	3e-35	144	231	37.23
PP00120G00840	Physcomitrella patens	2e-26	110	95	58.95
ATR_00061G02320	Amborella trichopoda	2e-18	86.7	70	52.86
OS09G30105	Oryza sativa	2e-17	87.8	97	41.24
OS07G36680	Oryza sativa	1e-16	84.7	82	52.44
ATR_00067G02080	Amborella trichopoda	4e-12	69.7	45	62.22
Naga_100079g22	Nannochloropsis gaditana	8e-09	62.8	107	37.38
OS06G11050	Oryza sativa	6e-07	56.2	81	46.91
ccr65060	Chondrus crispus	9e-07	56.6	149	30.87
ccr122880	Chondrus crispus	2e-06	55.5	151	30.46
PP00372G00370	Physcomitrella patens	2e-06	54.7	170	30.00
DDB_G0269124	Dictyostelium discoideum	7e-06	53.5	105	32.38

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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