Pico-PLAZA 3.0 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	E-value	Bitscore	Alignment Length	Identity Percentage
AT1G67800	Arabidopsis thaliana	0.0	945	454	100.00
AT5G14420	Arabidopsis thaliana	0.0	557	410	67.56
AT3G01650	Arabidopsis thaliana	0.0	533	408	64.95
OS12G19030	Oryza sativa	0.0	531	389	66.07
ATR_00166G00420	Amborella trichopoda	3e-178	513	433	61.89
OS01G68060	Oryza sativa	4e-178	514	391	65.98
OS06G40650	Oryza sativa	1e-174	505	403	64.02
OS08G38600	Oryza sativa	1e-170	492	381	63.78
ATR_00061G01340	Amborella trichopoda	3e-165	478	373	65.68
OS08G04130	Oryza sativa	1e-160	467	423	56.74
OS01G73000	Oryza sativa	9e-152	444	372	60.48
PP00030G00480	Physcomitrella patens	3e-151	446	475	52.42
AT5G63970	Arabidopsis thaliana	1e-145	427	368	58.15
ATR_00031G01030	Amborella trichopoda	4e-145	426	345	63.48
AT1G79380	Arabidopsis thaliana	4e-143	422	422	50.47
PP00423G00120	Physcomitrella patens	6e-140	417	429	52.21
PP00049G01060	Physcomitrella patens	1e-130	389	284	64.79
PP00388G00050	Physcomitrella patens	2e-118	362	276	63.77
VC00G129390	Volvox carteri	7e-113	347	286	61.89
CR09G01910	Chlamydomonas reinhardtii	7e-111	344	294	57.48
CV00G57270	Coccomyxa subellipsoidea C-169	9e-109	333	319	52.66
phs65770	Phytophtora sojae	4e-104	323	383	47.52
phs80980	Phytophtora sojae	1e-87	275	278	52.16
DDB_G0272196	Dictyostelium discoideum	1e-85	270	273	52.38
ATR_00061G01330	Amborella trichopoda	6e-80	259	214	59.81
WBGene00015061	Caenorhabditis elegans	3e-76	267	261	50.96
AC00G21320	Asterochloris sp. Cgr-DA1pho v2.0	2e-75	249	340	42.65
WBGene00006495	Caenorhabditis elegans	2e-65	232	255	47.45
ES0002G00940	Ectocarpus siliculosus	3e-60	209	257	43.97
phs375810	Phytophtora sojae	6e-59	200	263	40.68
OS09G39190	Oryza sativa	1e-57	208	273	45.05
phs81020	Phytophtora sojae	7e-46	173	288	34.72
phs64840	Phytophtora sojae	5e-43	154	145	51.72
DDB_G0293008	Dictyostelium discoideum	5e-25	111	245	35.10
OS05G30970	Oryza sativa	6e-25	111	274	33.21
ccr57460	Chondrus crispus	2e-24	109	246	33.74
pte259270	Paramecium tetraurelia	3e-24	109	263	31.18
ENSG00000139117	Homo sapiens	3e-24	109	247	31.58
ENSMUSG00000052560	Mus musculus	3e-24	109	247	31.58
AT5G07300	Arabidopsis thaliana	1e-23	107	280	32.50
ENSMUSG00000034796	Mus musculus	2e-23	107	265	34.72
pte400530	Paramecium tetraurelia	2e-23	107	307	28.66
pte737030	Paramecium tetraurelia	9e-23	105	329	27.96
ENSG00000085719	Homo sapiens	9e-23	104	248	34.68
pte610260	Paramecium tetraurelia	1e-22	104	283	29.68
ENSG00000196353	Homo sapiens	1e-22	104	244	33.20
PP00307G00330	Physcomitrella patens	2e-22	103	222	35.14
phs66400	Phytophtora sojae	2e-22	104	252	34.52
ENSMUSG00000032564	Mus musculus	2e-22	103	244	33.20
CNC64A_004G04860	Chlorella sp NC64A	6e-22	102	239	32.22
ES0033G00350	Ectocarpus siliculosus	6e-22	102	226	34.07
AT5G61910	Arabidopsis thaliana	7e-22	103	270	31.85
AT5G61900	Arabidopsis thaliana	1e-21	101	270	31.85
phs336110	Phytophtora sojae	1e-21	101	200	39.00
ENSG00000140848	Homo sapiens	2e-21	101	243	31.69
ENSG00000124772	Homo sapiens	2e-21	101	242	31.82
AT1G08860	Arabidopsis thaliana	7e-21	99.4	249	33.33
OS02G32160	Oryza sativa	1e-20	99.0	247	32.39
DDB_G0290529	Dictyostelium discoideum	1e-20	98.6	248	33.47
pte786040	Paramecium tetraurelia	2e-20	98.2	255	32.16
ES0085G00180	Ectocarpus siliculosus	2e-20	98.2	234	32.05
pte481140	Paramecium tetraurelia	2e-20	98.2	255	30.98
DDB_G0267688	Dictyostelium discoideum	7e-20	96.3	260	33.08
CR03G06380	Chlamydomonas reinhardtii	8e-20	96.3	273	29.30
pte472560	Paramecium tetraurelia	1e-19	95.5	221	32.58
pte334560	Paramecium tetraurelia	1e-19	95.9	201	33.83
pte557090	Paramecium tetraurelia	1e-19	95.5	221	33.94
pte621520	Paramecium tetraurelia	2e-19	94.7	264	31.82
pte676950	Paramecium tetraurelia	4e-19	94.0	254	30.71
ES0144G00540	Ectocarpus siliculosus	7e-19	93.2	264	30.30
pte663080	Paramecium tetraurelia	2e-18	91.7	199	34.17
pte278060	Paramecium tetraurelia	2e-18	91.7	268	29.85
CR03G06390	Chlamydomonas reinhardtii	3e-18	91.3	245	31.43
ES0008G00760	Ectocarpus siliculosus	4e-18	90.9	255	32.55
ccr31440	Chondrus crispus	4e-18	91.3	240	28.75
pte621540	Paramecium tetraurelia	6e-18	90.1	248	29.44
VC00G27450	Volvox carteri	6e-18	90.1	245	30.20
WBGene00012128	Caenorhabditis elegans	7e-18	90.1	334	26.95
VC00G27470	Volvox carteri	1e-17	89.0	249	30.12
pte266350	Paramecium tetraurelia	2e-17	89.0	204	30.88
DDB_G0272875	Dictyostelium discoideum	3e-17	88.2	258	30.62
DDB_G0274051	Dictyostelium discoideum	3e-17	88.2	258	30.62
DDB_G0284791	Dictyostelium discoideum	2e-16	85.5	293	30.72
ATR_00057G01130	Amborella trichopoda	2e-16	85.5	248	31.45
pte781610	Paramecium tetraurelia	4e-16	84.7	266	30.83
pte773150	Paramecium tetraurelia	7e-16	84.0	246	29.67
PTI_12G00120	Phaeodactylum tricornutum	2e-15	82.4	242	32.64
pte310080	Paramecium tetraurelia	3e-15	82.0	249	30.52
ccr101780	Chondrus crispus	5e-15	81.6	247	29.15
CNC64A_005G01300	Chlorella sp NC64A	6e-15	80.9	241	31.95
ES0033G00310	Ectocarpus siliculosus	6e-15	80.9	262	30.15
gsu27830	Galdieria sulphuraria	2e-14	79.7	257	27.63
WBGene00001577	Caenorhabditis elegans	9e-14	77.4	283	25.80
FC003G08650	Fragilariopsis cylindrus	3e-12	72.8	236	30.08
PTI_08G03460	Phaeodactylum tricornutum	6e-12	71.6	207	29.95
PTI_01G07450	Phaeodactylum tricornutum	9e-12	71.2	231	28.57
TP15G01510	Thalassiosira pseudonana	9e-12	70.1	237	29.54
PTI_02G04650	Phaeodactylum tricornutum	1e-11	70.5	237	29.96
pte148770	Paramecium tetraurelia	3e-11	69.3	204	29.41
pte122090	Paramecium tetraurelia	5e-11	68.6	204	28.43
VC00G107330	Volvox carteri	6e-11	68.9	45	55.56
CR09G07310	Chlamydomonas reinhardtii	7e-11	68.6	44	54.55
ENSG00000101752	Homo sapiens	2e-09	64.3	50	56.00
ENSMUSG00000024294	Mus musculus	2e-09	63.9	50	56.00
pte773130	Paramecium tetraurelia	3e-09	63.2	200	26.50
DDB_G0291498	Dictyostelium discoideum	6e-09	62.0	261	25.67
FBgn0263601	Drosophila melanogaster	7e-09	62.4	49	51.02
Naga_100001g56	Nannochloropsis gaditana	1e-08	61.2	202	30.69
pte137290	Paramecium tetraurelia	1e-08	61.2	219	25.11
CR01G02730	Chlamydomonas reinhardtii	2e-08	60.8	49	44.90
pte273780	Paramecium tetraurelia	2e-08	60.1	219	26.94
WBGene00007044	Caenorhabditis elegans	3e-08	60.1	199	23.62
VC00G41420	Volvox carteri	1e-07	58.2	51	41.18
AC00G67290	Asterochloris sp. Cgr-DA1pho v2.0	2e-07	53.5	50	40.00
pte277200	Paramecium tetraurelia	2e-07	57.0	220	25.00
PTI_08G00980	Phaeodactylum tricornutum	3e-07	57.0	206	29.61
PTI_08G00960	Phaeodactylum tricornutum	3e-07	56.6	206	29.61
FBgn0086442	Drosophila melanogaster	5e-06	53.1	49	40.82
CV00G32400	Coccomyxa subellipsoidea C-169	6e-06	52.8	45	42.22

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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