Functional clusters

Information

  • Type Gene Ontology
  • Description cellular component organization

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG09 3 CH_aco_139 8 10 0.000774031
Eragrostis curvula Contig25 3 CH_ecu_734 10 20 0.000315894
Miscanthus sinensis Chr01 3 CH_msi_253 14 30 0.0000045147
Oropetium thomaeum Chromosome_1 3 CH_oth_103 8 9 0.0000575661
Sorghum bicolor Chr02 3 CH_sbi_312 11 21 0.000136358
Sequoiadendron giganteum chr3 3 CH_sgi_1237 20 79 0.00037557
Setaria italica scaffold_1 3 CH_sit_455 8 11 0.000748834
Saccharum spontaneum Chr2D 3 CH_ssp_924 11 20 0.000433335
Triticum aestivum Chr2D 3 CH_tae_1125 18 63 0.000183698
Triticum aestivum Chr2A 3 CH_tae_766 19 57 0.00000325989
Triticum aestivum Chr2B 3 CH_tae_833 19 60 0.00000901555
Triticum dicoccoides 2A 3 CH_tdi_335 17 48 0.0000138471
Triticum turgidum chr4B 3 CH_ttu_709 7 8 0.000846625
Ananas comosus LG09 4 CH_aco_139 8 10 0.000774031
Eragrostis curvula Contig25 4 CH_ecu_734 10 20 0.000315894
Miscanthus sinensis Chr01 4 CH_msi_253 14 30 0.0000045147
Oropetium thomaeum Chromosome_1 4 CH_oth_103 8 9 0.0000575661
Sorghum bicolor Chr02 4 CH_sbi_312 11 21 0.000136358
Sequoiadendron giganteum chr3 4 CH_sgi_1237 20 79 0.00037557
Setaria italica scaffold_1 4 CH_sit_455 8 11 0.000748834
Saccharum spontaneum Chr2D 4 CH_ssp_924 11 20 0.000433335
Triticum aestivum Chr2D 4 CH_tae_1125 18 63 0.000183698
Triticum aestivum Chr2A 4 CH_tae_766 19 57 0.00000325989
Triticum aestivum Chr2B 4 CH_tae_833 19 60 0.00000901555
Triticum dicoccoides 2A 4 CH_tdi_335 17 48 0.0000138471
Triticum turgidum chr4B 4 CH_ttu_709 7 8 0.000846625

Available child term results

Ontology identifier Description Number of clusters
GO:0000002 mitochondrial genome maintenance 2
GO:0000027 ribosomal large subunit assembly 4
GO:0000028 ribosomal small subunit assembly 8
GO:0000045 autophagosome assembly 4
GO:0000132 establishment of mitotic spindle orientation 30
GO:0000183 rDNA heterochromatin assembly 2
GO:0000212 meiotic spindle organization 4
GO:0000244 spliceosomal tri-snRNP complex assembly 14
GO:0000245 spliceosomal complex assembly 28
GO:0000350 generation of catalytic spliceosome for second transesterification step 6
GO:0000395 mRNA 5'-splice site recognition 2
GO:0000422 autophagy of mitochondrion 4
GO:0000492 box C/D snoRNP assembly 2
GO:0000493 box H/ACA snoRNP assembly 8
GO:0000723 telomere maintenance 8
GO:0000730 DNA recombinase assembly 2
GO:0000741 karyogamy 2
GO:0000913 preprophase band assembly 2
GO:0000914 phragmoplast assembly 4
GO:0001188 RNA polymerase I preinitiation complex assembly 10
GO:0001558 regulation of cell growth 2
GO:0001731 formation of translation preinitiation complex 2
GO:0001778 plasma membrane repair 20
GO:0006265 DNA topological change 2
GO:0006268 DNA unwinding involved in DNA replication 2
GO:0006294 nucleotide-excision repair, preincision complex assembly 2
GO:0006325 chromatin organization 4
GO:0006334 nucleosome assembly 30
GO:0006335 DNA replication-dependent nucleosome assembly 2
GO:0006336 DNA replication-independent nucleosome assembly 10
GO:0006337 nucleosome disassembly 6
GO:0006338 chromatin remodeling 6
GO:0006342 chromatin silencing 4
GO:0006346 DNA methylation-dependent heterochromatin assembly 2
GO:0006348 chromatin silencing at telomere 2
GO:0006376 mRNA splice site selection 8
GO:0006415 translational termination 12
GO:0006625 protein targeting to peroxisome 2
GO:0006627 protein processing involved in protein targeting to mitochondrion 2
GO:0006996 organelle organization 10
GO:0006997 nucleus organization 8
GO:0007000 nucleolus organization 2
GO:0007004 telomere maintenance via telomerase 2
GO:0007005 mitochondrion organization 2
GO:0007009 plasma membrane organization 2
GO:0007010 cytoskeleton organization 2
GO:0007015 actin filament organization 6
GO:0007019 microtubule depolymerization 2
GO:0007020 microtubule nucleation 2
GO:0007021 tubulin complex assembly 6
GO:0007026 negative regulation of microtubule depolymerization 2
GO:0007029 endoplasmic reticulum organization 50
GO:0007033 vacuole organization 2
GO:0007043 cell-cell junction assembly 6
GO:0007060 male meiosis chromosome segregation 6
GO:0007064 mitotic sister chromatid cohesion 4
GO:0007065 male meiosis sister chromatid cohesion 2
GO:0007076 mitotic chromosome condensation 2
GO:0007094 mitotic spindle assembly checkpoint signaling 4
GO:0007096 regulation of exit from mitosis 2
GO:0007130 synaptonemal complex assembly 2
GO:0007131 reciprocal meiotic recombination 4
GO:0007142 male meiosis II 6
GO:0007143 female meiotic nuclear division 2
GO:0008154 actin polymerization or depolymerization 2
GO:0009657 plastid organization 2
GO:0009660 amyloplast organization 2
GO:0009662 etioplast organization 4
GO:0009664 plant-type cell wall organization 138
GO:0009828 plant-type cell wall loosening 8
GO:0009830 cell wall modification involved in abscission 26
GO:0009904 chloroplast accumulation movement 2
GO:0009992 cellular water homeostasis 12
GO:0010020 chloroplast fission 2
GO:0010111 glyoxysome organization 6
GO:0010151 chloroplast elongation 6
GO:0010197 polar nucleus fusion 4
GO:0010215 cellulose microfibril organization 18
GO:0010246 rhamnogalacturonan I biosynthetic process 4
GO:0010256 endomembrane system organization 4
GO:0010265 SCF complex assembly 16
GO:0010270 photosystem II oxygen evolving complex assembly 8
GO:0010275 NAD(P)H dehydrogenase complex assembly 2
GO:0010306 rhamnogalacturonan II biosynthetic process 2
GO:0010324 membrane invagination 16
GO:0010387 COP9 signalosome assembly 6
GO:0010390 histone monoubiquitination 10
GO:0010584 pollen exine formation 8
GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly 6
GO:0010822 positive regulation of mitochondrion organization 4
GO:0010968 regulation of microtubule nucleation 6
GO:0016226 iron-sulfur cluster assembly 8
GO:0016233 telomere capping 2
GO:0016320 endoplasmic reticulum membrane fusion 2
GO:0016560 protein import into peroxisome matrix, docking 2
GO:0016575 histone deacetylation 4
GO:0017004 cytochrome complex assembly 24
GO:0017121 plasma membrane phospholipid scrambling 4
GO:0017126 nucleologenesis 2
GO:0022607 cellular component assembly 8
GO:0030036 actin cytoskeleton organization 2
GO:0030042 actin filament depolymerization 22
GO:0030071 regulation of mitotic metaphase/anaphase transition 8
GO:0030150 protein import into mitochondrial matrix 2
GO:0030261 chromosome condensation 18
GO:0030397 membrane disassembly 4
GO:0030833 regulation of actin filament polymerization 10
GO:0030865 cortical cytoskeleton organization 6
GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity 12
GO:0031023 microtubule organizing center organization 10
GO:0031063 regulation of histone deacetylation 4
GO:0031117 positive regulation of microtubule depolymerization 2
GO:0031508 pericentric heterochromatin assembly 6
GO:0031936 negative regulation of chromatin silencing 2
GO:0031937 positive regulation of chromatin silencing 2
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032508 DNA duplex unwinding 4
GO:0032535 regulation of cellular component size 2
GO:0032790 ribosome disassembly 2
GO:0032889 regulation of vacuole fusion, non-autophagic 2
GO:0032955 regulation of division septum assembly 10
GO:0032981 mitochondrial respiratory chain complex I assembly 4
GO:0032984 protein-containing complex disassembly 4
GO:0033043 regulation of organelle organization 2
GO:0033169 histone H3-K9 demethylation 4
GO:0033259 plastid DNA replication 2
GO:0033614 chloroplast proton-transporting ATP synthase complex assembly 4
GO:0033617 mitochondrial cytochrome c oxidase assembly 2
GO:0034089 establishment of meiotic sister chromatid cohesion 4
GO:0034090 maintenance of meiotic sister chromatid cohesion 2
GO:0034314 Arp2/3 complex-mediated actin nucleation 2
GO:0034389 lipid droplet organization 2
GO:0034508 centromere complex assembly 2
GO:0034551 mitochondrial respiratory chain complex III assembly 4
GO:0034553 mitochondrial respiratory chain complex II assembly 10
GO:0034622 cellular protein-containing complex assembly 2
GO:0034970 histone H3-R2 methylation 2
GO:0035494 SNARE complex disassembly 14
GO:0035616 histone H2B conserved C-terminal lysine deubiquitination 2
GO:0035721 intraciliary retrograde transport 2
GO:0036123 histone H3-K9 dimethylation 4
GO:0036257 multivesicular body organization 6
GO:0040020 regulation of meiotic nuclear division 6
GO:0042255 ribosome assembly 2
GO:0042256 mature ribosome assembly 4
GO:0042407 cristae formation 4
GO:0042547 cell wall modification involved in multidimensional cell growth 10
GO:0042989 sequestering of actin monomers 4
GO:0043044 ATP-dependent chromatin remodeling 16
GO:0043248 proteasome assembly 22
GO:0043254 regulation of protein-containing complex assembly 2
GO:0043461 proton-transporting ATP synthase complex assembly 8
GO:0043486 histone exchange 8
GO:0043622 cortical microtubule organization 4
GO:0043933 protein-containing complex subunit organization 8
GO:0043967 histone H4 acetylation 10
GO:0043968 histone H2A acetylation 2
GO:0043970 histone H3-K9 acetylation 2
GO:0043971 histone H3-K18 acetylation 6
GO:0043972 histone H3-K23 acetylation 2
GO:0043981 histone H4-K5 acetylation 4
GO:0043985 histone H4-R3 methylation 2
GO:0044648 histone H3-K4 dimethylation 2
GO:0045040 protein insertion into mitochondrial outer membrane 4
GO:0045041 protein import into mitochondrial intermembrane space 2
GO:0045048 protein insertion into ER membrane 2
GO:0045128 negative regulation of reciprocal meiotic recombination 2
GO:0045793 positive regulation of cell size 6
GO:0045836 positive regulation of meiotic nuclear division 4
GO:0045839 negative regulation of mitotic nuclear division 4
GO:0045841 negative regulation of mitotic metaphase/anaphase transition 2
GO:0045876 positive regulation of sister chromatid cohesion 6
GO:0046785 microtubule polymerization 2
GO:0048041 focal adhesion assembly 2
GO:0048208 COPII vesicle coating 30
GO:0048280 vesicle fusion with Golgi apparatus 6
GO:0048312 intracellular distribution of mitochondria 4
GO:0051013 microtubule severing 2
GO:0051016 barbed-end actin filament capping 2
GO:0051017 actin filament bundle assembly 2
GO:0051123 RNA polymerase II preinitiation complex assembly 4
GO:0051127 positive regulation of actin nucleation 4
GO:0051128 regulation of cellular component organization 8
GO:0051129 negative regulation of cellular component organization 2
GO:0051131 chaperone-mediated protein complex assembly 12
GO:0051205 protein insertion into membrane 2
GO:0051259 protein complex oligomerization 2
GO:0051276 chromosome organization 2
GO:0051289 protein homotetramerization 2
GO:0051315 attachment of mitotic spindle microtubules to kinetochore 6
GO:0051382 kinetochore assembly 2
GO:0051511 negative regulation of unidimensional cell growth 6
GO:0051513 regulation of monopolar cell growth 8
GO:0051571 positive regulation of histone H3-K4 methylation 4
GO:0051573 negative regulation of histone H3-K9 methylation 6
GO:0051639 actin filament network formation 2
GO:0051783 regulation of nuclear division 8
GO:0052324 plant-type cell wall cellulose biosynthetic process 2
GO:0052386 cell wall thickening 2
GO:0052543 callose deposition in cell wall 2
GO:0060271 cilium assembly 6
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061024 membrane organization 2
GO:0061025 membrane fusion 4
GO:0061780 mitotic cohesin loading 14
GO:0061936 fusion of sperm to egg plasma membrane involved in double fertilization forming a zygote and endosperm 2
GO:0070071 proton-transporting two-sector ATPase complex assembly 2
GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly 4
GO:0070192 chromosome organization involved in meiotic cell cycle 2
GO:0070208 protein heterotrimerization 2
GO:0070584 mitochondrion morphogenesis 2
GO:0070601 centromeric sister chromatid cohesion 2
GO:0070682 proteasome regulatory particle assembly 2
GO:0070828 heterochromatin organization 2
GO:0070897 transcription preinitiation complex assembly 12
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 6
GO:0070932 histone H3 deacetylation 2
GO:0071555 cell wall organization 6
GO:0071562 nucleus-vacuole junction assembly 2
GO:0071668 plant-type cell wall assembly 6
GO:0071763 nuclear membrane organization 2
GO:0071784 endoplasmic reticulum cisternal network assembly 4
GO:0071786 endoplasmic reticulum tubular network organization 14
GO:0072355 histone H3-T3 phosphorylation 4
GO:0080092 regulation of pollen tube growth 6
GO:0080110 sporopollenin biosynthetic process 4
GO:0080129 proteasome core complex assembly 2
GO:0080171 lytic vacuole organization 4
GO:0080173 male-female gamete recognition during double fertilization forming a zygote and endosperm 6
GO:0080175 phragmoplast microtubule organization 2
GO:0080182 histone H3-K4 trimethylation 4
GO:0090063 positive regulation of microtubule nucleation 2
GO:0090114 COPII-coated vesicle budding 2
GO:0090158 endoplasmic reticulum membrane organization 6
GO:0090306 meiotic spindle assembly 4
GO:0090307 mitotic spindle assembly 2
GO:0090522 vesicle tethering involved in exocytosis 12
GO:0097250 mitochondrial respirasome assembly 16
GO:0097298 regulation of nucleus size 2
GO:0097753 membrane bending 10
GO:0098532 histone H3-K27 trimethylation 20
GO:0099022 vesicle tethering 4
GO:0110102 ribulose bisphosphate carboxylase complex assembly 42
GO:0120009 intermembrane lipid transfer 4
GO:0140013 meiotic nuclear division 4
GO:0140014 mitotic nuclear division 4
GO:1900109 regulation of histone H3-K9 dimethylation 2
GO:1900186 negative regulation of clathrin-dependent endocytosis 6
GO:1901673 regulation of mitotic spindle assembly 4
GO:1902066 regulation of cell wall pectin metabolic process 2
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1902890 regulation of root hair elongation 2
GO:1902892 positive regulation of root hair elongation 2
GO:1903259 exon-exon junction complex disassembly 6
GO:1904821 chloroplast disassembly 16
GO:1905037 autophagosome organization 2
GO:1905499 trichome papilla formation 2
GO:1905515 non-motile cilium assembly 2
GO:1905691 lipid droplet disassembly 2
GO:1905775 negative regulation of DNA helicase activity 12
GO:1990019 protein storage vacuole organization 10
GO:1990619 histone H3-K9 deacetylation 2
GO:2000369 regulation of clathrin-dependent endocytosis 2
GO:2000694 regulation of phragmoplast microtubule organization 2
GO:2000786 positive regulation of autophagosome assembly 2
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 2
GO:2001253 regulation of histone H3-K36 trimethylation 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001