Functional clusters

Information

  • Type Gene Ontology
  • Description chromatin organization

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Magnolia biondii Chr17 3 CH_mbi_238 6 10 0.00000035346
Micromonas commoda Chr_01 3 CH_mco_9 4 4 0.000155347
Magnolia biondii Chr17 4 CH_mbi_238 6 10 0.00000035346
Micromonas commoda Chr_01 4 CH_mco_9 4 4 0.000155347

Available child term results

Ontology identifier Description Number of clusters
GO:0000183 rDNA heterochromatin assembly 2
GO:0006334 nucleosome assembly 30
GO:0006335 DNA replication-dependent nucleosome assembly 2
GO:0006336 DNA replication-independent nucleosome assembly 10
GO:0006337 nucleosome disassembly 6
GO:0006338 chromatin remodeling 6
GO:0006342 chromatin silencing 4
GO:0006346 DNA methylation-dependent heterochromatin assembly 2
GO:0006348 chromatin silencing at telomere 2
GO:0010390 histone monoubiquitination 10
GO:0016575 histone deacetylation 4
GO:0031063 regulation of histone deacetylation 4
GO:0031508 pericentric heterochromatin assembly 6
GO:0031936 negative regulation of chromatin silencing 2
GO:0031937 positive regulation of chromatin silencing 2
GO:0033169 histone H3-K9 demethylation 4
GO:0034970 histone H3-R2 methylation 2
GO:0035616 histone H2B conserved C-terminal lysine deubiquitination 2
GO:0036123 histone H3-K9 dimethylation 4
GO:0043044 ATP-dependent chromatin remodeling 16
GO:0043486 histone exchange 8
GO:0043967 histone H4 acetylation 10
GO:0043968 histone H2A acetylation 2
GO:0043970 histone H3-K9 acetylation 2
GO:0043971 histone H3-K18 acetylation 6
GO:0043972 histone H3-K23 acetylation 2
GO:0043981 histone H4-K5 acetylation 4
GO:0043985 histone H4-R3 methylation 2
GO:0044648 histone H3-K4 dimethylation 2
GO:0051571 positive regulation of histone H3-K4 methylation 4
GO:0051573 negative regulation of histone H3-K9 methylation 6
GO:0070828 heterochromatin organization 2
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 6
GO:0070932 histone H3 deacetylation 2
GO:0072355 histone H3-T3 phosphorylation 4
GO:0080182 histone H3-K4 trimethylation 4
GO:0098532 histone H3-K27 trimethylation 20
GO:1900109 regulation of histone H3-K9 dimethylation 2
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1990619 histone H3-K9 deacetylation 2
GO:2001253 regulation of histone H3-K36 trimethylation 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001