Functional clusters
Information
- Type Gene Ontology
- Description endoplasmic reticulum organization
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Asparagus officinalis | AsparagusV1_09 | 3 | CH_aof_158 | 3 | 8 | 0.000737073 |
| Allium sativum | chr3 | 3 | CH_asa_750 | 4 | 39 | 0.000578139 |
| Aegilops tauschii | 4D | 3 | CH_ata_406 | 3 | 8 | 0.000742383 |
| Brachypodium distachyon | Bd1 | 3 | CH_bdi_161 | 3 | 3 | 0.0000208442 |
| Chara braunii | BFEA01000246 | 3 | CH_cbr_65 | 3 | 4 | 0.0000037242 |
| Cenchrus purpureus | GWHAORA00000011 | 3 | CH_cpu_122 | 6 | 7 | 0.00000000000194304 |
| Cenchrus purpureus | GWHAORA00000004 | 3 | CH_cpu_711 | 3 | 3 | 0.000141589 |
| Digitaria exilis | Dexi_CM05836_chr09B | 3 | CH_dex_426 | 3 | 3 | 0.000051696 |
| Digitaria exilis | Dexi_CM05836_chr09A | 3 | CH_dex_427 | 3 | 3 | 0.000051696 |
| Eragrostis curvula | 5 | 3 | CH_ecu_143 | 7 | 21 | 0.000000000000693793 |
| Elaeis guineensis | EG5.1_Chr1 | 3 | CH_egu_27 | 5 | 6 | 0.000000000729226 |
| Panicum hallii | Chr09 | 3 | CH_pha_231 | 3 | 3 | 0.0000361673 |
| Sorghum bicolor | Chr01 | 3 | CH_sbi_351 | 3 | 5 | 0.000188433 |
| Secale cereale | GWHASIY00000007 | 3 | CH_sce_105 | 5 | 5 | 0.000000000123117 |
| Secale cereale | GWHASIY00000004 | 3 | CH_sce_197 | 5 | 11 | 0.0000000565428 |
| Secale cereale | GWHASIY00000006 | 3 | CH_sce_365 | 4 | 8 | 0.00000725167 |
| Setaria italica | scaffold_9 | 3 | CH_sit_276 | 3 | 3 | 0.0000538724 |
| Saccharum spontaneum | Chr1A | 3 | CH_ssp_487 | 4 | 9 | 0.0000149257 |
| Setaria viridis | Chr_09 | 3 | CH_svi_284 | 3 | 3 | 0.0000373236 |
| Triticum aestivum | Chr4B | 3 | CH_tae_1055 | 3 | 3 | 0.000104187 |
| Triticum aestivum | Chr5B | 3 | CH_tae_364 | 5 | 7 | 0.00000000204718 |
| Triticum aestivum | Chr4B | 3 | CH_tae_461 | 5 | 10 | 0.0000000245069 |
| Triticum aestivum | Chr4D | 3 | CH_tae_722 | 4 | 6 | 0.00000151787 |
| Triticum turgidum | chr4B | 3 | CH_ttu_110 | 6 | 11 | 0.0000000000231511 |
| Triticum turgidum | chr4B | 3 | CH_ttu_482 | 3 | 3 | 0.0000610456 |
| Asparagus officinalis | AsparagusV1_09 | 4 | CH_aof_158 | 3 | 8 | 0.000737073 |
| Allium sativum | chr3 | 4 | CH_asa_750 | 4 | 39 | 0.000578139 |
| Aegilops tauschii | 4D | 4 | CH_ata_406 | 3 | 8 | 0.000742383 |
| Brachypodium distachyon | Bd1 | 4 | CH_bdi_161 | 3 | 3 | 0.0000208442 |
| Chara braunii | BFEA01000246 | 4 | CH_cbr_65 | 3 | 4 | 0.0000037242 |
| Cenchrus purpureus | GWHAORA00000011 | 4 | CH_cpu_122 | 6 | 7 | 0.00000000000194304 |
| Cenchrus purpureus | GWHAORA00000004 | 4 | CH_cpu_711 | 3 | 3 | 0.000141589 |
| Digitaria exilis | Dexi_CM05836_chr09B | 4 | CH_dex_426 | 3 | 3 | 0.000051696 |
| Digitaria exilis | Dexi_CM05836_chr09A | 4 | CH_dex_427 | 3 | 3 | 0.000051696 |
| Eragrostis curvula | 5 | 4 | CH_ecu_143 | 7 | 21 | 0.000000000000693793 |
| Elaeis guineensis | EG5.1_Chr1 | 4 | CH_egu_27 | 5 | 6 | 0.000000000729226 |
| Panicum hallii | Chr09 | 4 | CH_pha_231 | 3 | 3 | 0.0000361673 |
| Sorghum bicolor | Chr01 | 4 | CH_sbi_351 | 3 | 5 | 0.000188433 |
| Secale cereale | GWHASIY00000007 | 4 | CH_sce_105 | 5 | 5 | 0.000000000123117 |
| Secale cereale | GWHASIY00000004 | 4 | CH_sce_197 | 5 | 11 | 0.0000000565428 |
| Secale cereale | GWHASIY00000006 | 4 | CH_sce_365 | 4 | 8 | 0.00000725167 |
| Setaria italica | scaffold_9 | 4 | CH_sit_276 | 3 | 3 | 0.0000538724 |
| Saccharum spontaneum | Chr1A | 4 | CH_ssp_487 | 4 | 9 | 0.0000149257 |
| Setaria viridis | Chr_09 | 4 | CH_svi_284 | 3 | 3 | 0.0000373236 |
| Triticum aestivum | Chr4B | 4 | CH_tae_1055 | 3 | 3 | 0.000104187 |
| Triticum aestivum | Chr5B | 4 | CH_tae_364 | 5 | 7 | 0.00000000204718 |
| Triticum aestivum | Chr4B | 4 | CH_tae_461 | 5 | 10 | 0.0000000245069 |
| Triticum aestivum | Chr4D | 4 | CH_tae_722 | 4 | 6 | 0.00000151787 |
| Triticum turgidum | chr4B | 4 | CH_ttu_110 | 6 | 11 | 0.0000000000231511 |
| Triticum turgidum | chr4B | 4 | CH_ttu_482 | 3 | 3 | 0.0000610456 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0016320 | endoplasmic reticulum membrane fusion | 2 |
| GO:0045048 | protein insertion into ER membrane | 2 |
| GO:0071784 | endoplasmic reticulum cisternal network assembly | 4 |
| GO:0071786 | endoplasmic reticulum tubular network organization | 14 |
| GO:0090158 | endoplasmic reticulum membrane organization | 6 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |