Functional clusters

Information

  • Type Gene Ontology
  • Description post-embryonic development

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_340 3 CH_aag_146 8 10 0.000303495
Hordeum vulgare chr5H 3 CH_hvu_375 17 80 0.000298991
Sorghum bicolor Chr08 3 CH_sbi_210 18 55 0.00000451316
Sorghum bicolor Chr04 3 CH_sbi_372 9 15 0.000313856
Secale cereale GWHASIY00000004 3 CH_sce_413 20 68 0.0000195136
Secale cereale GWHASIY00000005 3 CH_sce_614 11 22 0.00026366
Anthoceros agrestis Sc2ySwM_340 4 CH_aag_146 8 10 0.000303495
Hordeum vulgare chr5H 4 CH_hvu_375 17 80 0.000298991
Sorghum bicolor Chr08 4 CH_sbi_210 18 55 0.00000451316
Sorghum bicolor Chr04 4 CH_sbi_372 9 15 0.000313856
Secale cereale GWHASIY00000004 4 CH_sce_413 20 68 0.0000195136
Secale cereale GWHASIY00000005 4 CH_sce_614 11 22 0.00026366

Available child term results

Ontology identifier Description Number of clusters
GO:0009793 embryo development ending in seed dormancy 12
GO:0009845 seed germination 6
GO:0009901 anther dehiscence 2
GO:0009908 flower development 8
GO:0009909 regulation of flower development 8
GO:0009910 negative regulation of flower development 20
GO:0009911 positive regulation of flower development 8
GO:0009960 endosperm development 16
GO:0010029 regulation of seed germination 2
GO:0010030 positive regulation of seed germination 2
GO:0010050 vegetative phase change 4
GO:0010068 protoderm histogenesis 2
GO:0010071 root meristem specification 2
GO:0010094 specification of carpel identity 12
GO:0010097 specification of stamen identity 2
GO:0010100 negative regulation of photomorphogenesis 2
GO:0010102 lateral root morphogenesis 6
GO:0010187 negative regulation of seed germination 6
GO:0010214 seed coat development 2
GO:0010227 floral organ abscission 2
GO:0010231 maintenance of seed dormancy 2
GO:0010234 anther wall tapetum cell fate specification 6
GO:0010235 guard mother cell cytokinesis 2
GO:0010254 nectary development 2
GO:0010311 lateral root formation 6
GO:0010321 regulation of vegetative phase change 2
GO:0010374 stomatal complex development 8
GO:0010440 stomatal lineage progression 4
GO:0010442 guard cell morphogenesis 8
GO:0010444 guard mother cell differentiation 2
GO:0010588 cotyledon vascular tissue pattern formation 8
GO:0035670 plant-type ovary development 2
GO:0048316 seed development 2
GO:0048317 seed morphogenesis 12
GO:0048354 mucilage biosynthetic process involved in seed coat development 2
GO:0048359 mucilage metabolic process involved in seed coat development 2
GO:0048440 carpel development 2
GO:0048444 floral organ morphogenesis 2
GO:0048451 petal formation 4
GO:0048455 stamen formation 2
GO:0048457 floral whorl morphogenesis 2
GO:0048459 floral whorl structural organization 2
GO:0048461 flower structural organization 12
GO:0048462 carpel formation 2
GO:0048481 plant ovule development 2
GO:0048482 plant ovule morphogenesis 2
GO:0048497 maintenance of floral organ identity 2
GO:0048527 lateral root development 2
GO:0048528 post-embryonic root development 2
GO:0048573 photoperiodism, flowering 2
GO:0048574 long-day photoperiodism, flowering 2
GO:0048575 short-day photoperiodism, flowering 2
GO:0048576 positive regulation of short-day photoperiodism, flowering 2
GO:0048577 negative regulation of short-day photoperiodism, flowering 4
GO:0048586 regulation of long-day photoperiodism, flowering 2
GO:0048587 regulation of short-day photoperiodism, flowering 10
GO:0048653 anther development 2
GO:0048654 anther morphogenesis 22
GO:0048658 anther wall tapetum development 2
GO:0048700 acquisition of desiccation tolerance in seed 44
GO:0048825 cotyledon development 4
GO:0060862 negative regulation of floral organ abscission 16
GO:0061062 regulation of nematode larval development 2
GO:0080060 integument development 2
GO:0080086 stamen filament development 24
GO:0080112 seed growth 4
GO:0080113 regulation of seed growth 4
GO:0080127 fruit septum development 6
GO:0080166 stomium development 2
GO:0080181 lateral root branching 4
GO:0090567 reproductive shoot system development 2
GO:0090696 post-embryonic plant organ development 2
GO:0098755 maintenance of seed dormancy by absisic acid 4
GO:0120195 positive regulation of anther dehiscence 2
GO:0140547 acquisition of seed longevity 4
GO:1900140 regulation of seedling development 4
GO:1901332 negative regulation of lateral root development 2
GO:1901333 positive regulation of lateral root development 2
GO:1990058 fruit replum development 2
GO:1990059 fruit valve development 2
GO:2000014 regulation of endosperm development 2
GO:2000028 regulation of photoperiodism, flowering 4
GO:2000033 regulation of seed dormancy process 22
GO:2000034 regulation of seed maturation 2
GO:2000122 negative regulation of stomatal complex development 24
GO:2000123 positive regulation of stomatal complex development 6
GO:2000306 positive regulation of photomorphogenesis 4
GO:2000692 negative regulation of seed maturation 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001