Functional clusters

Information

  • Type MapMan
  • Description Cell cycle organisation.mitosis and meiosis

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Oryza brachyantha 4 1 CH_obr_155 4 5 0.0000474583
Oryza sativa ssp. indica Chr4 1 CH_osaindica_205 4 5 0.0000374569
Oryza sativa ssp. japonica chr04 1 CH_osa_163 4 4 0.00000759197
Phyllostachys edulis hic_scaffold_23 1 CH_ped_264 4 4 0.0000332961
Triticum aestivum Chr2D 1 CH_tae_996 4 4 0.0000582352
Triticum turgidum chr2B 1 CH_ttu_463 4 4 0.0000423128
Oryza brachyantha 4 2 CH_obr_155 4 5 0.0000474583
Oryza sativa ssp. indica Chr4 2 CH_osaindica_205 4 5 0.0000374569
Oryza sativa ssp. japonica chr04 2 CH_osa_163 4 4 0.00000759197
Phyllostachys edulis hic_scaffold_23 2 CH_ped_264 4 4 0.0000332961
Triticum aestivum Chr2D 2 CH_tae_996 4 4 0.0000582352
Triticum turgidum chr2B 2 CH_ttu_463 4 4 0.0000423128

Available child term results

Ontology identifier Description Number of clusters
13.3.1.1.1 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I/II complex.component CAP-C/SMC4 8
13.3.1.1.2 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I/II complex.component CAP-E2/SMC2 8
13.3.1.2.1 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I complex.component CAP-D2A 2
13.3.1.2.2 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I complex.component CAP-G 14
13.3.1.2.3 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin I complex.component CAP-H 10
13.3.1.3.1 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin II complex.component CAP-D2B 8
13.3.1.3.2 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin II complex.component CAP-G2 10
13.3.1.3.3 Cell cycle organisation.mitosis and meiosis.chromatin condensation.condensin II complex.component CAP-H2 8
13.3.2.1 Cell cycle organisation.mitosis and meiosis.chromosome segregation.prospindle assembly factor (TPX2) 2
13.3.2.2.1.2 Cell cycle organisation.mitosis and meiosis.chromosome segregation.centromere assembly and maintenance.chromosome passenger complex (CPC).component INCENP/WYRD 22
13.3.2.2.1.3 Cell cycle organisation.mitosis and meiosis.chromosome segregation.centromere assembly and maintenance.chromosome passenger complex (CPC).component BORR 6
13.3.2.2.2 Cell cycle organisation.mitosis and meiosis.chromosome segregation.centromere assembly and maintenance.centromere maintenance factor (GIP) 8
13.3.2.2.3 Cell cycle organisation.mitosis and meiosis.chromosome segregation.centromere assembly and maintenance.histone H3 variant (CENH3) 12
13.3.2.2.4 Cell cycle organisation.mitosis and meiosis.chromosome segregation.centromere assembly and maintenance.CENH3-recruitment factor (KNL2/Mis18) 26
13.3.2.3.1 Cell cycle organisation.mitosis and meiosis.chromosome segregation.kinetochore proteins.kinetochore assembly protein (CENP-C) 4
13.3.2.3.2.1 Cell cycle organisation.mitosis and meiosis.chromosome segregation.kinetochore proteins.NDC80 outer kinetochore complex.component NDC80 8
13.3.2.3.2.2 Cell cycle organisation.mitosis and meiosis.chromosome segregation.kinetochore proteins.NDC80 outer kinetochore complex.component NUF2 12
13.3.2.3.2.3 Cell cycle organisation.mitosis and meiosis.chromosome segregation.kinetochore proteins.NDC80 outer kinetochore complex.component SPC25 4
13.3.2.3.2.4 Cell cycle organisation.mitosis and meiosis.chromosome segregation.kinetochore proteins.NDC80 outer kinetochore complex.component MUN/SPC24 10
13.3.2.3.3 Cell cycle organisation.mitosis and meiosis.chromosome segregation.kinetochore proteins.center kinetochore protein (Mis12) 6
13.3.3.1.1.1.2 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.platform subcomplex.component APC4 6
13.3.3.1.1.1.3 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.platform subcomplex.component APC5 4
13.3.3.1.1.2.2 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.arc lamp subcomplex.component APC6 2
13.3.3.1.1.3.1 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.catalytic core subcomplex.scaffold component APC2 6
13.3.3.1.1.3.2 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.APC/C E3 ubiquitin protein ligase complex.catalytic core subcomplex.component APC10 4
13.3.3.1.2 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.E2 ubiquitin-conjugating protein 2
13.3.3.1.3 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.activator protein (FZR) 2
13.3.3.1.4 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.activator protein (CDC20) 8
13.3.3.1.5 Cell cycle organisation.mitosis and meiosis.metaphase to anaphase transition.Anaphase-Promoting Complex/Cyclosome (APC/C)-dependent ubiquitination.regulatory protein (OSD1/UVI4) 26
13.3.4.1.1 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.component SMC1/TTN8 6
13.3.4.1.2 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.component SMC3/TTN7 20
13.3.4.1.3 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.mitotic-specific Kleisin-type component SCC1 8
13.3.4.1.4 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.meiotic-specific Kleisin-type component SYN1 2
13.3.4.1.5 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.component SCC3 2
13.3.4.2.1.1 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC2-SCC4 adherin complex.adherin (SCC2) 14
13.3.4.2.1.2 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin loading.SCC2-SCC4 adherin complex.adherin (SCC4) 4
13.3.4.2.2 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin loading.adherin-recruiting kinase (CDC7) 2
13.3.4.3 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin establishment 2
13.3.4.3.1 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin establishment.cohesin cofactor (WAPL) 8
13.3.4.3.2 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin establishment.cohesin cofactor (PDS5) 6
13.3.4.3.3 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin establishment.N-acetyltransferase cohesin cofactor (CTF7) 6
13.3.4.4.2 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin dissociation.centromeric cohesion protection factor (SGO) 4
13.3.4.4.3 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin dissociation.separase (ESP1) 14
13.3.4.5 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery 2
13.3.4.5.1 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.mitotic checkpoint kinase (BUB1) 2
13.3.4.5.2 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.checkpoint protein (BUB3) 4
13.3.4.5.5 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.checkpoint protein (MAD3/BUBR1) 4
13.3.4.5.6 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.mitotic checkpoint kinase (MPS1) 4
13.3.4.5.7 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.spindle assembly checkpoint machinery.checkpoint protein (TANMEI) 4
13.3.5.1.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic initiation.regulatory protein (DYAD/SWI1) 2
13.3.5.1.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic initiation.transcription factor (MMD1/DUET) 2
13.3.5.1.4 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic initiation.homolog pairing factor (ASY1) 6
13.3.5.1.5 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic initiation.chromosome axis protein (ASY3) 2
13.3.5.1.6 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic initiation.chromosome axis protein (ASY4) 8
13.3.5.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation 2
13.3.5.2.1.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.meiotic topoisomerase-VI complex.component b/MTOP6b 8
13.3.5.2.1.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.meiotic topoisomerase-VI complex.accessory component MIDGET 6
13.3.5.2.1.4 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.meiotic topoisomerase-VI complex.accessory component RHL1 2
13.3.5.2.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.accessory protein (PRD1/MEI1) 2
13.3.5.2.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.accessory protein (PRD2/MEI4) 8
13.3.5.2.4 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.accessory protein (PRD3/PAIR1) 6
13.3.5.2.5 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break initiation.accessory protein (DFO) 2
13.3.5.3.1.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break processing.MRE11-RAD50-NBS1 (MRN) complex.component RAD50 8
13.3.5.3.1.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break processing.MRE11-RAD50-NBS1 (MRN) complex.component NBS1 6
13.3.5.3.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break processing.regulatory protein for RAD50 nuclear import (PHS1) 12
13.3.5.3.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic double strand break processing.ssDNA endonuclease (COM1/SAE2) 8
13.3.5.4.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.recombinase (DMC1) 4
13.3.5.4.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.DMC1-recruitment protein (BRCA2) 8
13.3.5.4.3.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RAD51c-XRCC3 accessory DSB repair heterodimer.component RAD51C 2
13.3.5.4.4.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.component RPA1 18
13.3.5.4.4.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.DNA strand exchange.RPA presynaptic filament assembly factor complex.component RPA3 2
13.3.5.5.1.2.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.MSH4-MSH5 Holliday junction stabilizing heterodimer.component MSH5 4
13.3.5.5.1.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.transverse filament protein of synaptonemal complex (ZYP1/ZIP1) 8
13.3.5.5.1.4.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.SHOC1-PTD heterodimer.endonuclease component SHOC1/ZIP2 4
13.3.5.5.1.5 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.accessory protein (SPO22/ZIP4) 6
13.3.5.5.1.6 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.double Holliday junction resolving protein (MLH3) 4
13.3.5.5.1.7 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.pachytene checkpoint protein (PCH2/CRC1) 2
13.3.5.5.1.8 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.accessory protein (HEI10/ZIP3) 2
13.3.5.5.1.9 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.accessory protein (BVF1) 2
13.3.5.5.2.1.1.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.component MUS81 40
13.3.5.5.2.1.1.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-dependent pathway.MUS81-EME1 Holliday junction cleavage heterodimer.component EME1 22
13.3.5.5.2.2.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-independent pathway.endonuclease (FAN1) 8
13.3.5.5.2.2.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-independent pathway.meiotic crossover formation factor (FANCD2) 4
13.3.5.5.2.2.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-independent pathway.crosslink repair helicase (HRQ1) 12
13.3.5.5.3.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.RTR Holliday junction dissolution complex.non-catalytic component RMI1 2
13.3.5.5.3.4 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.RTR Holliday junction dissolution complex.non-catalytic accessory component RMI2 6
13.3.5.5.4.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.FANCM-MHF DNA remodeling complex.DNA translocase component FANCM 6
13.3.5.5.4.3 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.FANCM-MHF DNA remodeling complex.component MHF2 4
13.3.5.5.5.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.FIGL1-FLIP meiotic crossover regulator complex.ATPase component FIGL1 2
13.3.5.5.5.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.FIGL1-FLIP meiotic crossover regulator complex.component FLIP 10

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001