Functional clusters

Information

  • Type MapMan
  • Description Photosynthesis.photophosphorylation.photosystem II

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Ananas comosus LG01 1 CH_aco_86 4 6 0.000126716
Brachypodium distachyon Bd5 1 CH_bdi_148 4 4 0.0000101763
Hordeum vulgare chr4H 1 CH_hvu_379 4 8 0.000347309
Sorghum bicolor Chr08 1 CH_sbi_110 5 5 0.0000000130462
Sorghum bicolor Chr02 1 CH_sbi_402 4 9 0.000502778
Saccharum spontaneum Chr2D 1 CH_ssp_606 5 13 0.0000393918
Ananas comosus LG01 2 CH_aco_86 4 6 0.000126716
Brachypodium distachyon Bd5 2 CH_bdi_148 4 4 0.0000101763
Hordeum vulgare chr4H 2 CH_hvu_379 4 8 0.000347309
Sorghum bicolor Chr08 2 CH_sbi_110 5 5 0.0000000130462
Sorghum bicolor Chr02 2 CH_sbi_402 4 9 0.000502778
Saccharum spontaneum Chr2D 2 CH_ssp_606 5 13 0.0000393918

Available child term results

Ontology identifier Description Number of clusters
1.1.1.1 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex 2
1.1.1.1.1 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.component LHCb1/2/3 84
1.1.1.1.2 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.component LHCb4 4
1.1.1.1.3 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.component LHCb5 2
1.1.1.1.4 Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.component LHCb6 4
1.1.1.2 Photosynthesis.photophosphorylation.photosystem II.PS-II complex 26
1.1.1.2.1 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.reaction center complex 6
1.1.1.2.1.5 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.reaction center complex.cytochrome b559 heterodimer 2
1.1.1.2.1.5.1 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.reaction center complex.cytochrome b559 heterodimer.component alpha/PsbE 4
1.1.1.2.10 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbTn 6
1.1.1.2.11 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbW 22
1.1.1.2.12 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbX 4
1.1.1.2.2.1 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic components.component OEC33/PsbO 4
1.1.1.2.2.2 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic components.component OEC23/PsbP 2
1.1.1.2.2.3 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic components.component OEC16/PsbQ 2
1.1.1.2.8 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbR 22
1.1.1.3 Photosynthesis.photophosphorylation.photosystem II.assembly 2
1.1.1.3.1 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (LPA1) 2
1.1.1.3.12 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (Psb32) 6
1.1.1.3.15 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (RBD1) 6
1.1.1.3.16 Photosynthesis.photophosphorylation.photosystem II.assembly.chaperone-like assembly factor (SCO2/CYO1) 2
1.1.1.3.17 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (TerC) 10
1.1.1.3.18 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (LTO1) 6
1.1.1.3.19 Photosynthesis.photophosphorylation.photosystem II.assembly.psbA-translation activator (HCF173) 4
1.1.1.3.2 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (LPA2) 4
1.1.1.3.20 Photosynthesis.photophosphorylation.photosystem II.assembly.psbJ/psbN-translation activator (LPE1) 4
1.1.1.3.22 Photosynthesis.photophosphorylation.photosystem II.assembly.thioredoxin (TRX-M) 2
1.1.1.3.23 Photosynthesis.photophosphorylation.photosystem II.assembly.LHCII-stabilizing factor (SEP3) 4
1.1.1.3.25 Photosynthesis.photophosphorylation.photosystem II.assembly.thylakoid biogenesis factor (CPSFL1) 4
1.1.1.3.3 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (LPA3) 4
1.1.1.3.4 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (HCF106) 2
1.1.1.3.8 Photosynthesis.photophosphorylation.photosystem II.assembly.regulatory protein (Psb27) 2
1.1.1.3.9 Photosynthesis.photophosphorylation.photosystem II.assembly.regulatory protein (Psb28) 4
1.1.1.4.2 Photosynthesis.photophosphorylation.photosystem II.repair and reassembly cycle.protease (FtsH2/8) 2
1.1.1.4.3 Photosynthesis.photophosphorylation.photosystem II.repair and reassembly cycle.stabilizing factor (ELIP) 90
1.1.1.4.4 Photosynthesis.photophosphorylation.photosystem II.repair and reassembly cycle.repair factor (PPL1) 6
1.1.1.4.5 Photosynthesis.photophosphorylation.photosystem II.repair and reassembly cycle.photoprotective factor (MPH1) 2
1.1.1.5.1.2 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.regulatory phosphorylation.protein kinase (STN8) 2
1.1.1.5.2.1 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.regulatory acetylation.lysine acetyltransferase (NSI) 2
1.1.1.5.3.1.1 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qE/qZ-type quenching.pH-sensor protein (PsbS) 2
1.1.1.5.3.1.2 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qE/qZ-type quenching.xanthophyll cycle 2
1.1.1.5.3.1.2.2 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qE/qZ-type quenching.xanthophyll cycle.zeaxanthin epoxidase (ZEP) 6
1.1.1.5.3.1.3.1 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qE/qZ-type quenching.LhcSR-dependent machinery.light stress-responsive protein (LhcSR) 2
1.1.1.5.3.1.4 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qE/qZ-type quenching.regulatory protein (FLAP1) 24
1.1.1.5.3.1.5 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qE/qZ-type quenching.regulatory protein (DLDG1) 14
1.1.1.5.3.2.2 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qH-type antenna quenching.NPQ-regulatory protein (SOQ1) 4
1.1.1.5.3.2.3 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qH-type antenna quenching.NPQ-regulatory protein (ROQH1) 2
1.1.1.5.4.1 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.thylakoid grana stacking.regulatory factor (RIQ) 4
1.1.1.5.4.2 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.thylakoid grana stacking.regulatory factor (CURT) 6
1.1.1.5.5.1 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.acclimation factor activities.acclimation factor (MPH2) 2
1.1.1.5.5.2 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.acclimation factor activities.acclimation factor (APE) 2
1.1.1.5.5.3 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.acclimation factor activities.light-responsive regulatory protein (SEP) 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001