Functional clusters

Information

  • Type MapMan
  • Description Photosynthesis.photophosphorylation.photosystem II.assembly

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Physcomitrium patens Chr16 1 CH_ppa_32 4 4 0.000000146232
Physcomitrium patens Chr16 2 CH_ppa_32 4 4 0.000000146232

Available child term results

Ontology identifier Description Number of clusters
1.1.1.3.1 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (LPA1) 2
1.1.1.3.12 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (Psb32) 6
1.1.1.3.15 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (RBD1) 6
1.1.1.3.16 Photosynthesis.photophosphorylation.photosystem II.assembly.chaperone-like assembly factor (SCO2/CYO1) 2
1.1.1.3.17 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (TerC) 10
1.1.1.3.18 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (LTO1) 6
1.1.1.3.19 Photosynthesis.photophosphorylation.photosystem II.assembly.psbA-translation activator (HCF173) 4
1.1.1.3.2 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (LPA2) 4
1.1.1.3.20 Photosynthesis.photophosphorylation.photosystem II.assembly.psbJ/psbN-translation activator (LPE1) 4
1.1.1.3.22 Photosynthesis.photophosphorylation.photosystem II.assembly.thioredoxin (TRX-M) 2
1.1.1.3.23 Photosynthesis.photophosphorylation.photosystem II.assembly.LHCII-stabilizing factor (SEP3) 4
1.1.1.3.25 Photosynthesis.photophosphorylation.photosystem II.assembly.thylakoid biogenesis factor (CPSFL1) 4
1.1.1.3.3 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (LPA3) 4
1.1.1.3.4 Photosynthesis.photophosphorylation.photosystem II.assembly.assembly factor (HCF106) 2
1.1.1.3.8 Photosynthesis.photophosphorylation.photosystem II.assembly.regulatory protein (Psb27) 2
1.1.1.3.9 Photosynthesis.photophosphorylation.photosystem II.assembly.regulatory protein (Psb28) 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001