Functional clusters

Information

  • Type MapMan
  • Description Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbR

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brachypodium distachyon Bd1 1 CH_bdi_240 2 2 0.000185002
Lolium perenne Lp_chr2_0 1 CH_lpe_283 2 2 0.0000964274
Oryza alta GWHAZTO00000007 1 CH_oal_622 2 2 0.00030227
Oryza alta GWHAZTO00000019 1 CH_oal_623 2 3 0.00030227
Oryza sativa ssp. indica Chr7 1 CH_osaindica_278 2 2 0.000154983
Oryza sativa Kitaake Chr7 1 CH_osak_356 2 2 0.000168857
Oryza sativa ssp. japonica chr07 1 CH_osa_265 2 2 0.000158437
Phyllostachys edulis hic_scaffold_4 1 CH_ped_424 2 2 0.000407456
Physcomitrium patens Chr27 1 CH_ppa_208 2 2 0.000367636
Populus trichocarpa Chr11 1 CH_ptr_424 2 2 0.000346801
Populus trichocarpa Chr01 1 CH_ptr_425 2 2 0.000346801
Brachypodium distachyon Bd1 2 CH_bdi_240 2 2 0.000185002
Lolium perenne Lp_chr2_0 2 CH_lpe_283 2 2 0.0000964274
Oryza alta GWHAZTO00000007 2 CH_oal_622 2 2 0.00030227
Oryza alta GWHAZTO00000019 2 CH_oal_623 2 3 0.00030227
Oryza sativa ssp. indica Chr7 2 CH_osaindica_278 2 2 0.000154983
Oryza sativa Kitaake Chr7 2 CH_osak_356 2 2 0.000168857
Oryza sativa ssp. japonica chr07 2 CH_osa_265 2 2 0.000158437
Phyllostachys edulis hic_scaffold_4 2 CH_ped_424 2 2 0.000407456
Physcomitrium patens Chr27 2 CH_ppa_208 2 2 0.000367636
Populus trichocarpa Chr11 2 CH_ptr_424 2 2 0.000346801
Populus trichocarpa Chr01 2 CH_ptr_425 2 2 0.000346801

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001