Functional clusters
Information
- Type MapMan
- Description Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qE/qZ-type quenching.regulatory protein (FLAP1)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Brachypodium distachyon | Bd3 | 1 | CH_bdi_274 | 2 | 2 | 0.000370005 |
Chlamydomonas reinhardtii | chromosome_11 | 1 | CH_cre_57 | 2 | 2 | 0.0006824 |
Eragrostis curvula | Contig4 | 1 | CH_ecu_571 | 2 | 2 | 0.000116317 |
Hordeum vulgare | chr7H | 1 | CH_hvu_316 | 2 | 2 | 0.000121751 |
Oryza alta | GWHAZTO00000008 | 1 | CH_oal_55 | 4 | 6 | 0.000000000025775 |
Oryza alta | GWHAZTO00000020 | 1 | CH_oal_713 | 2 | 2 | 0.000564237 |
Oryza sativa ssp. indica | Chr8 | 1 | CH_osaindica_358 | 2 | 3 | 0.000464928 |
Secale cereale | GWHASIY00000007 | 1 | CH_sce_617 | 2 | 2 | 0.000136587 |
Setaria italica | scaffold_6 | 1 | CH_sit_341 | 2 | 2 | 0.00017413 |
Setaria viridis | Chr_06 | 1 | CH_svi_338 | 2 | 2 | 0.000156535 |
Triticum aestivum | Chr7D | 1 | CH_tae_1453 | 2 | 2 | 0.000841798 |
Triticum turgidum | chr7B | 1 | CH_ttu_599 | 2 | 2 | 0.000312534 |
Brachypodium distachyon | Bd3 | 2 | CH_bdi_274 | 2 | 2 | 0.000370005 |
Chlamydomonas reinhardtii | chromosome_11 | 2 | CH_cre_57 | 2 | 2 | 0.0006824 |
Eragrostis curvula | Contig4 | 2 | CH_ecu_571 | 2 | 2 | 0.000116317 |
Hordeum vulgare | chr7H | 2 | CH_hvu_316 | 2 | 2 | 0.000121751 |
Oryza alta | GWHAZTO00000008 | 2 | CH_oal_55 | 4 | 6 | 0.000000000025775 |
Oryza alta | GWHAZTO00000020 | 2 | CH_oal_713 | 2 | 2 | 0.000564237 |
Oryza sativa ssp. indica | Chr8 | 2 | CH_osaindica_358 | 2 | 3 | 0.000464928 |
Secale cereale | GWHASIY00000007 | 2 | CH_sce_617 | 2 | 2 | 0.000136587 |
Setaria italica | scaffold_6 | 2 | CH_sit_341 | 2 | 2 | 0.00017413 |
Setaria viridis | Chr_06 | 2 | CH_svi_338 | 2 | 2 | 0.000156535 |
Triticum aestivum | Chr7D | 2 | CH_tae_1453 | 2 | 2 | 0.000841798 |
Triticum turgidum | chr7B | 2 | CH_ttu_599 | 2 | 2 | 0.000312534 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |