Functional clusters
Information
- Type MapMan
- Description Photosynthesis.photophosphorylation.photosystem II.LHC-II complex.component LHCb1/2/3
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_362 | 1 | CH_aag_14 | 6 | 17 | 0.0000000000114269 |
| Anthoceros agrestis | Sc2ySwM_368 | 1 | CH_aag_62 | 3 | 4 | 0.0000262688 |
| Allium sativum | chr4 | 1 | CH_asa_777 | 2 | 2 | 0.000581305 |
| Aegilops tauschii | 6D | 1 | CH_ata_172 | 3 | 5 | 0.0000165411 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_132 | 3 | 3 | 0.000000103419 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 1 | CH_atr_118 | 3 | 4 | 0.00000132512 |
| Calamus simplicifolius | scaffold147 | 1 | CH_calsi_36 | 3 | 3 | 0.00000000676031 |
| Chara braunii | BFEA01000226 | 1 | CH_cbr_18 | 4 | 7 | 0.0000000193272 |
| Chara braunii | BFEA01000209 | 1 | CH_cbr_2 | 8 | 22 | 4.95821e-19 |
| Ceratophyllum demersum | 4 | 1 | CH_cde_205 | 4 | 40 | 0.000316337 |
| Ceratophyllum demersum | 1 | 1 | CH_cde_29 | 4 | 7 | 0.000000122963 |
| Ceratophyllum demersum | 6 | 1 | CH_cde_66 | 3 | 4 | 0.0000254396 |
| Chlamydomonas reinhardtii | chromosome_6 | 1 | CH_cre_22 | 4 | 30 | 0.0000151302 |
| Dioscorea dumetorum | contig206 | 1 | CH_ddu_58 | 4 | 5 | 0.00000000353634 |
| Dioscorea dumetorum | contig391 | 1 | CH_ddu_72 | 4 | 7 | 0.0000000247403 |
| Glycine max | Gm16 | 1 | CH_gma_292 | 3 | 8 | 0.0000145133 |
| Hordeum vulgare | chr5H | 1 | CH_hvu_24 | 6 | 6 | 4.38775e-16 |
| Hordeum vulgare | chr6H | 1 | CH_hvu_25 | 6 | 6 | 4.38775e-16 |
| Hordeum vulgare | chr1H | 1 | CH_hvu_55 | 5 | 6 | 0.00000000000648413 |
| Lolium perenne | Lp_chr7_0.1 | 1 | CH_lpe_176 | 3 | 4 | 0.00000505733 |
| Lolium perenne | Lp_chr5_0 | 1 | CH_lpe_177 | 3 | 4 | 0.00000505733 |
| Lolium perenne | Lp_chr6_0 | 1 | CH_lpe_72 | 4 | 4 | 0.000000001524 |
| Marchantia polymorpha | scaffold_199 | 1 | CH_mpo_2 | 9 | 9 | 7.63948e-25 |
| Physcomitrium patens | Chr02 | 1 | CH_ppa_4 | 7 | 25 | 0.000000000000339137 |
| Physcomitrium patens | Chr05 | 1 | CH_ppa_72 | 3 | 4 | 0.0000346749 |
| Secale cereale | GWHASIY00000004 | 1 | CH_sce_345 | 3 | 3 | 0.00000354473 |
| Secale cereale | GWHASIY00000001 | 1 | CH_sce_528 | 3 | 6 | 0.000070828 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_17 | 8 | 8 | 4.86727e-24 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_217 | 3 | 3 | 0.00000235128 |
| Triticum aestivum | Chr1D | 1 | CH_tae_417 | 4 | 4 | 0.00000000669798 |
| Triticum aestivum | Chr5B | 1 | CH_tae_418 | 4 | 4 | 0.00000000669798 |
| Triticum aestivum | Chr6B | 1 | CH_tae_523 | 4 | 6 | 0.000000100391 |
| Triticum aestivum | Chr5D | 1 | CH_tae_869 | 3 | 3 | 0.0000137711 |
| Triticum aestivum | Chr6A | 1 | CH_tae_98 | 7 | 10 | 8.20885e-17 |
| Triticum aestivum | Chr1B | 1 | CH_tae_991 | 3 | 3 | 0.0000550636 |
| Triticum dicoccoides | 6B | 1 | CH_tdi_125 | 5 | 13 | 0.00000000281694 |
| Triticum dicoccoides | 5B | 1 | CH_tdi_364 | 3 | 4 | 0.0000377368 |
| Triticum dicoccoides | 6A | 1 | CH_tdi_45 | 6 | 7 | 0.00000000000000706974 |
| Triticum turgidum | chr6B | 1 | CH_ttu_209 | 4 | 8 | 0.000000046852 |
| Zea mays B73 | 1 | 1 | CH_zma_274 | 2 | 2 | 0.000766969 |
| Zostera marina | Chr04 | 1 | CH_zosmarina_102 | 3 | 5 | 0.0000399665 |
| Zostera marina | Chr02 | 1 | CH_zosmarina_74 | 4 | 13 | 0.00000137597 |
| Anthoceros agrestis | Sc2ySwM_362 | 2 | CH_aag_14 | 6 | 17 | 0.0000000000114269 |
| Anthoceros agrestis | Sc2ySwM_368 | 2 | CH_aag_62 | 3 | 4 | 0.0000262688 |
| Allium sativum | chr4 | 2 | CH_asa_777 | 2 | 2 | 0.000581305 |
| Aegilops tauschii | 6D | 2 | CH_ata_172 | 3 | 5 | 0.0000165411 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_132 | 3 | 3 | 0.000000103419 |
| Amborella trichopoda | AmTr_v1.0_scaffold00045 | 2 | CH_atr_118 | 3 | 4 | 0.00000132512 |
| Calamus simplicifolius | scaffold147 | 2 | CH_calsi_36 | 3 | 3 | 0.00000000676031 |
| Chara braunii | BFEA01000226 | 2 | CH_cbr_18 | 4 | 7 | 0.0000000193272 |
| Chara braunii | BFEA01000209 | 2 | CH_cbr_2 | 8 | 22 | 4.95821e-19 |
| Ceratophyllum demersum | 4 | 2 | CH_cde_205 | 4 | 40 | 0.000316337 |
| Ceratophyllum demersum | 1 | 2 | CH_cde_29 | 4 | 7 | 0.000000122963 |
| Ceratophyllum demersum | 6 | 2 | CH_cde_66 | 3 | 4 | 0.0000254396 |
| Chlamydomonas reinhardtii | chromosome_6 | 2 | CH_cre_22 | 4 | 30 | 0.0000151302 |
| Dioscorea dumetorum | contig206 | 2 | CH_ddu_58 | 4 | 5 | 0.00000000353634 |
| Dioscorea dumetorum | contig391 | 2 | CH_ddu_72 | 4 | 7 | 0.0000000247403 |
| Glycine max | Gm16 | 2 | CH_gma_292 | 3 | 8 | 0.0000145133 |
| Hordeum vulgare | chr5H | 2 | CH_hvu_24 | 6 | 6 | 4.38775e-16 |
| Hordeum vulgare | chr6H | 2 | CH_hvu_25 | 6 | 6 | 4.38775e-16 |
| Hordeum vulgare | chr1H | 2 | CH_hvu_55 | 5 | 6 | 0.00000000000648413 |
| Lolium perenne | Lp_chr7_0.1 | 2 | CH_lpe_176 | 3 | 4 | 0.00000505733 |
| Lolium perenne | Lp_chr5_0 | 2 | CH_lpe_177 | 3 | 4 | 0.00000505733 |
| Lolium perenne | Lp_chr6_0 | 2 | CH_lpe_72 | 4 | 4 | 0.000000001524 |
| Marchantia polymorpha | scaffold_199 | 2 | CH_mpo_2 | 9 | 9 | 7.63948e-25 |
| Physcomitrium patens | Chr02 | 2 | CH_ppa_4 | 7 | 25 | 0.000000000000339137 |
| Physcomitrium patens | Chr05 | 2 | CH_ppa_72 | 3 | 4 | 0.0000346749 |
| Secale cereale | GWHASIY00000004 | 2 | CH_sce_345 | 3 | 3 | 0.00000354473 |
| Secale cereale | GWHASIY00000001 | 2 | CH_sce_528 | 3 | 6 | 0.000070828 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_17 | 8 | 8 | 4.86727e-24 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_217 | 3 | 3 | 0.00000235128 |
| Triticum aestivum | Chr1D | 2 | CH_tae_417 | 4 | 4 | 0.00000000669798 |
| Triticum aestivum | Chr5B | 2 | CH_tae_418 | 4 | 4 | 0.00000000669798 |
| Triticum aestivum | Chr6B | 2 | CH_tae_523 | 4 | 6 | 0.000000100391 |
| Triticum aestivum | Chr5D | 2 | CH_tae_869 | 3 | 3 | 0.0000137711 |
| Triticum aestivum | Chr6A | 2 | CH_tae_98 | 7 | 10 | 8.20885e-17 |
| Triticum aestivum | Chr1B | 2 | CH_tae_991 | 3 | 3 | 0.0000550636 |
| Triticum dicoccoides | 6B | 2 | CH_tdi_125 | 5 | 13 | 0.00000000281694 |
| Triticum dicoccoides | 5B | 2 | CH_tdi_364 | 3 | 4 | 0.0000377368 |
| Triticum dicoccoides | 6A | 2 | CH_tdi_45 | 6 | 7 | 0.00000000000000706974 |
| Triticum turgidum | chr6B | 2 | CH_ttu_209 | 4 | 8 | 0.000000046852 |
| Zea mays B73 | 1 | 2 | CH_zma_274 | 2 | 2 | 0.000766969 |
| Zostera marina | Chr04 | 2 | CH_zosmarina_102 | 3 | 5 | 0.0000399665 |
| Zostera marina | Chr02 | 2 | CH_zosmarina_74 | 4 | 13 | 0.00000137597 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |