Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001201', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '520', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p04360' => 'bna', 'A04p07990' => 'bna', 'A05p09310' => 'bna', 'A10p31520' => 'bna', 'Aa31csc22G50' => 'aar', 'Aa31csc22G60' => 'aar', 'Aa31csc22G70' => 'aar', 'Aa31csc22G80' => 'aar', 'Aa31LG11G5440' => 'aar', 'Aa31LG11G5450' => 'aar', 'Aa31LG2G16490' => 'aar', 'Aa31LG3G2540' => 'aar', 'Aa31LG5G21680' => 'aar', 'Aa31LG7G15440' => 'aar', 'Aa31LG7G15450' => 'aar', 'Aa31LG9G4630' => 'aar', 'Aa31LG9G4640' => 'aar', 'Aa31sc52G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3177' => 'aag', 'Actinidia06708' => 'ach', 'Actinidia18573' => 'ach', 'Actinidia18574' => 'ach', 'Actinidia28919' => 'ach', 'Actinidia31292' => 'ach', 'Actinidia31293' => 'ach', 'Actinidia31294' => 'ach', 'Actinidia33950' => 'ach', 'Actinidia34586' => 'ach', 'Actinidia34587' => 'ach', 'Ah.08g210980' => 'amhyb', 'Ah.16g107470' => 'amhyb', 'AL3G21300' => 'aly', 'AL4G32670' => 'aly', 'AL4G32680' => 'aly', 'AL6G14210' => 'aly', 'AL7G17320' => 'aly', 'Aqoxy1G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.66FLD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM3VD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUT3DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS0SHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8W5NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N246S2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R549UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBWK9U' => 'arhy', 'AT2G36490' => 'ath', 'AT3G10010' => 'ath', 'AT4G04957' => 'ath', 'AT4G34060' => 'ath', 'AT5G04560' => 'ath', 'ATR0820G039' => 'atr', 'ATR1149G052' => 'atr', 'Atru.chr12.965' => 'acertr', 'Atru.chr3.3382' => 'acertr', 'Atru.chr6.394' => 'acertr', 'Atru.chr8.1639' => 'acertr', 'AUR62002762' => 'cqu', 'AUR62004786' => 'cqu', 'AUR62023938' => 'cqu', 'AUR62028009' => 'cqu', 'AUR62028010' => 'cqu', 'AUR62033581' => 'cqu', 'AUR62037477' => 'cqu', 'AUR62038303' => 'cqu', 'AUR62041417' => 'cqu', 'BcaB02g09350' => 'bca', 'BcaB08g35661' => 'bca', 'BcaC01g01492' => 'bca', 'BcaC02g11765' => 'bca', 'BcaC06g32166' => 'bca', 'BcaNung03789' => 'bca', 'BcaNung06824' => 'bca', 'BcaNung07061' => 'bca', 'BolC1t00460H' => 'bol', 'BolC4t22808H' => 'bol', 'BolC9t59965H' => 'bol', 'BraA01t00425Z' => 'bra', 'BraA04t16488Z' => 'bra', 'BraA05t19888Z' => 'bra', 'BraA10t45198Z' => 'bra', 'C01p04760' => 'bna', 'C04p11600' => 'bna', 'C09p72210' => 'bna', 'CAN.G1138.12' => 'can', 'CAN.G135.68' => 'can', 'CAN.G282.14' => 'can', 'CAN.G344.2' => 'can', 'CAN.G668.49' => 'can', 'CAN.G824.26' => 'can', 'CAN.G824.27' => 'can', 'CANSAT25G0803' => 'cansat', 'CANSAT54G2606' => 'cansat', 'CANSAT56G1981' => 'cansat', 'CANSAT80G1516' => 'cansat', 'CARHR068350' => 'chi', 'CARHR084510' => 'chi', 'CARHR130800' => 'chi', 'CARHR133860' => 'chi', 'CARHR208710' => 'chi', 'CARHR259200' => 'chi', 'CARHR286790' => 'chi', 'CARHR286800' => 'chi', 'Carub.0003s0911' => 'cru', 'Carub.0004s1830' => 'cru', 'Carub.0004s1831' => 'cru', 'Carub.0006s0350' => 'cru', 'Carub.0007s0634' => 'cru', 'Ca_01678_v3' => 'car', 'Ca_10493_v3' => 'car', 'Ca_11125_v3' => 'car', 'Ca_11623_v3' => 'car', 'Ca_20517_v3' => 'car', 'Cc02_g10250' => 'ccan', 'Cc06_g05230' => 'ccan', 'CDE02G2714' => 'cde', 'CDE03G0091' => 'cde', 'CDE03G0262' => 'cde', 'CDE03G0461' => 'cde', 'CDE04G2541' => 'cde', 'CDE04G3083' => 'cde', 'CDE04G3509' => 'cde', 'CDE09G0105' => 'cde', 'Cfa010084' => 'cfa', 'Cfa011221' => 'cfa', 'Ciclev10010892m.g' => 'ccl', 'Ciclev10027676m.g' => 'ccl', 'Ciclev10030474m.g' => 'ccl', 'CiPaw.09G008500' => 'cil', 'CiPaw.13G036100' => 'cil', 'CiPaw.14G028400' => 'cil', 'ClCG02G021910' => 'cla', 'ClCG04G009770' => 'cla', 'ClCG05G021570' => 'cla', 'ClCG10G019400' => 'cla', 'COL.COLO4_27244' => 'col', 'COL.COLO4_28083' => 'col', 'COL.COLO4_29819' => 'col', 'COL.COLO4_30817' => 'col', 'Cpa.g.sc128.52' => 'cpa', 'Cpa.g.sc5.80' => 'cpa', 'Cpa.g.sc5.81' => 'cpa', 'Cpa.g.sc5.83' => 'cpa', 'Cre07.g355466' => 'cre', 'CsaV3_3G036780' => 'csa', 'CsaV3_5G035660' => 'csa', 'CsaV3_6G014730' => 'csa', 'CsaV3_6G040410' => 'csa', 'CSS0002130' => 'camsi', 'CSS0012668' => 'camsi', 'CSS0014168' => 'camsi', 'CSS0047502' => 'camsi', 'DCAR_000566' => 'dca', 'DCAR_004685' => 'dca', 'DCAR_006374' => 'dca', 'DCAR_013953' => 'dca', 'DCAR_014734' => 'dca', 'DCAR_017626' => 'dca', 'DCAR_023271' => 'dca', 'DCAR_023273' => 'dca', 'DCAR_029993' => 'dca', 'Dinv03195' => 'din', 'Dinv19826' => 'din', 'Dinv20843' => 'din', 'Dinv21259' => 'din', 'Dinv21260' => 'din', 'Dinv23941' => 'din', 'Dinv29423' => 'din', 'Dinv30660' => 'din', 'Duzib093G0950' => 'dzi', 'Duzib114G0475' => 'dzi', 'Duzib168G1001' => 'dzi', 'ECA232G0849' => 'eca', 'ECA233G0191' => 'eca', 'ECA236G3687' => 'eca', 'ECA238G1134' => 'eca', 'ECA238G4359' => 'eca', 'ECA240G1852' => 'eca', 'EL10Ac4g08943' => 'bvu', 'EL10Ac5g11585' => 'bvu', 'EL10Ac5g12151' => 'bvu', 'EL10Ac7g16995' => 'bvu', 'EL10Ac9g21080' => 'bvu', 'Eucgr.A01547' => 'egr', 'Eucgr.J00426' => 'egr', 'Eucgr.J01016' => 'egr', 'FAN02G1301' => 'fan', 'FAN02G3204' => 'fan', 'FAN04G1023' => 'fan', 'FAN05G1662' => 'fan', 'FAN05G3005' => 'fan', 'FAN05G3013' => 'fan', 'FAN05G4586' => 'fan', 'FAN08G3428' => 'fan', 'FAN09G1539' => 'fan', 'FAN09G4664' => 'fan', 'FAN11G1782' => 'fan', 'FAN14G0799' => 'fan', 'FAN14G4458' => 'fan', 'FAN15G3379' => 'fan', 'FAN16G0828' => 'fan', 'FAN18G0408' => 'fan', 'FAN20G2479' => 'fan', 'FAN21G3547' => 'fan', 'FAN24G3154' => 'fan', 'FAN27G1454' => 'fan', 'FAN27G2238' => 'fan', 'FvH4_2g10170' => 'fve', 'FvH4_3g04410' => 'fve', 'FvH4_5g29900' => 'fve', 'FvH4_6g07060' => 'fve', 'FvH4_6g17860' => 'fve', 'Glyma.03G190800' => 'gma', 'Glyma.10G065900' => 'gma', 'Glyma.10G202150' => 'gma', 'Glyma.13G151000' => 'gma', 'Glyma.20G188300' => 'gma', 'Gohir.A01G129700' => 'ghi', 'Gohir.A04G066400' => 'ghi', 'Gohir.A05G083800' => 'ghi', 'Gohir.A09G136700' => 'ghi', 'Gohir.D01G119000' => 'ghi', 'Gohir.D04G104500' => 'ghi', 'Gohir.D05G086701' => 'ghi', 'Gohir.D09G137800' => 'ghi', 'Gorai.002G145100' => 'gra', 'Gorai.006G158300' => 'gra', 'Gorai.009G088400' => 'gra', 'Gorai.009G408300' => 'gra', 'GSVIVG01031400001' => 'vvi', 'GSVIVG01033777001' => 'vvi', 'GSVIVG01034713001' => 'vvi', 'HanXRQChr01g0018671' => 'han', 'HanXRQChr04g0108701' => 'han', 'HanXRQChr07g0202991' => 'han', 'HanXRQChr11g0334091' => 'han', 'HanXRQChr13g0400001' => 'han', 'HanXRQChr14g0432601' => 'han', 'HanXRQChr14g0456351' => 'han', 'HanXRQChr16g0498811' => 'han', 'Haze_02614' => 'cav', 'Haze_19533' => 'cav', 'Haze_23450' => 'cav', 'Hma1.2p1_0567F.1_g180040' => 'hma', 'Hma1.2p1_0725F.1_g208850' => 'hma', 'Hma1.2p1_0927F.1_g237650' => 'hma', 'HPP92_005760' => 'vpl', 'HPP92_005761' => 'vpl', 'HPP92_009314' => 'vpl', 'HPP92_009315' => 'vpl', 'HPP92_016165' => 'vpl', 'HPP92_016166' => 'vpl', 'HPP92_016167' => 'vpl', 'HPP92_026209' => 'vpl', 'HPP92_026210' => 'vpl', 'HPP92_026211' => 'vpl', 'Hund04064' => 'sun', 'Hund07689' => 'sun', 'Lalb_Chr01g0018331' => 'lal', 'Lalb_Chr02g0151321' => 'lal', 'Lalb_Chr02g0151331' => 'lal', 'Lalb_Chr02g0151341' => 'lal', 'Lalb_Chr02g0151351' => 'lal', 'Lalb_Chr19g0128911' => 'lal', 'Lalb_Chr19g0128921' => 'lal', 'Lalb_Chr19g0128931' => 'lal', 'Lalb_Chr21g0315671' => 'lal', 'Lj1A221T46' => 'lonja', 'Lj1g0027290' => 'lja', 'Lj2A129T52' => 'lonja', 'Lj3A1003T41' => 'lonja', 'Lj3A932G50' => 'lonja', 'Lj3g0024881' => 'lja', 'Lj5g0002552' => 'lja', 'Lj5g0003988' => 'lja', 'Lj5g0006180' => 'lja', 'Lj5g0026634' => 'lja', 'Lsat_1_v5_gn_0_17001' => 'lsa', 'Lsat_1_v5_gn_2_102681' => 'lsa', 'Lsat_1_v5_gn_2_21401' => 'lsa', 'Lsat_1_v5_gn_2_23100' => 'lsa', 'Lsat_1_v5_gn_3_76420' => 'lsa', 'Lsat_1_v5_gn_4_110941' => 'lsa', 'Lsat_1_v5_gn_4_121940' => 'lsa', 'Lsat_1_v5_gn_5_106621' => 'lsa', 'Lsat_1_v5_gn_6_21180' => 'lsa', 'Lsat_1_v5_gn_6_27040' => 'lsa', 'Lsat_1_v5_gn_6_57640' => 'lsa', 'Lsat_1_v5_gn_6_57660' => 'lsa', 'Lsat_1_v5_gn_6_95000' => 'lsa', 'Lsat_1_v5_gn_7_68960' => 'lsa', 'Lsat_1_v5_gn_9_45340' => 'lsa', 'Lsat_1_v5_gn_9_79861' => 'lsa', 'Manes.04G008900' => 'mes', 'Manes.07G091800' => 'mes', 'Manes.08G020500' => 'mes', 'Manes.09G060800' => 'mes', 'Manes.10G055200' => 'mes', 'Manes.17G117800' => 'mes', 'Mapoly0005s0045' => 'mpo', 'Mapoly0018s0032' => 'mpo', 'MCO11G457' => 'mco', 'MD02G1245300' => 'mdo', 'MD02G1245400' => 'mdo', 'MD05G1004100' => 'mdo', 'MD07G1071800' => 'mdo', 'MD09G1259000' => 'mdo', 'MD09G1259100' => 'mdo', 'MD11G1157400' => 'mdo', 'MD12G1017600' => 'mdo', 'MD14G1015300' => 'mdo', 'MD17G1253500' => 'mdo', 'MD17G1253600' => 'mdo', 'Medtr1g061220' => 'mtr', 'Medtr1g492760' => 'mtr', 'Medtr2g008920' => 'mtr', 'Medtr2g008930' => 'mtr', 'Medtr2g075880' => 'mtr', 'Medtr2g075885' => 'mtr', 'Medtr2g075890' => 'mtr', 'Medtr2g084845' => 'mtr', 'Medtr2g099840' => 'mtr', 'Medtr2g099850' => 'mtr', 'Medtr2g099900' => 'mtr', 'Medtr5g095880' => 'mtr', 'Medtr6g088520' => 'mtr', 'Medtr6g088650' => 'mtr', 'Medtr7g005880' => 'mtr', 'Medtr7g103680' => 'mtr', 'MELO3C009432.2' => 'cme', 'MELO3C012368.2' => 'cme', 'MELO3C021451.2' => 'cme', 'MELO3C024516.2' => 'cme', 'Migut.D02337' => 'egut', 'Migut.F00888' => 'egut', 'Migut.J00987' => 'egut', 'Migut.L00220' => 'egut', 'Migut.L00221' => 'egut', 'Migut.L00609' => 'egut', 'MSTRG.19228' => 'ama', 'MSTRG.21064' => 'ama', 'MSTRG.9109' => 'ama', 'Nitab4.5_0000132g0200' => 'nta', 'Nitab4.5_0000233g0200' => 'nta', 'Nitab4.5_0001807g0090' => 'nta', 'Nitab4.5_0001922g0010' => 'nta', 'Nitab4.5_0002259g0070' => 'nta', 'Nitab4.5_0003987g0020' => 'nta', 'Nitab4.5_0005311g0020' => 'nta', 'Nitab4.5_0005460g0030' => 'nta', 'Nitab4.5_0006360g0050' => 'nta', 'Nitab4.5_0009829g0020' => 'nta', 'Nitab4.5_0010583g0010' => 'nta', 'Nn1g00052' => 'nnu', 'Nn1g05905' => 'nnu', 'Nn1g09481' => 'nnu', 'Nn2g13995' => 'nnu', 'Nn6g33515' => 'nnu', 'Oeu026559.4' => 'oeu', 'Oeu027978.3' => 'oeu', 'Oeu032421.3' => 'oeu', 'Oeu037536.1' => 'oeu', 'Oeu040537.2' => 'oeu', 'Oeu040540.1' => 'oeu', 'Oeu050180.1' => 'oeu', 'Oeu059852.1' => 'oeu', 'Os01g0218032' => 'osa', 'Os02g0494700' => 'osa', 'Os02g0496500' => 'osa', 'Os05g0445900' => 'osa', 'Os05g0446550' => 'osa', 'Os05g0446600' => 'osa', 'Peaxi162Scf00012g01927' => 'pax', 'Peaxi162Scf00017g00412' => 'pax', 'Peaxi162Scf00038g02141' => 'pax', 'Peaxi162Scf00110g01921' => 'pax', 'Peaxi162Scf00244g00044' => 'pax', 'Peaxi162Scf00433g00067' => 'pax', 'PGR004G0133' => 'pgr', 'PGR044G1748' => 'pgr', 'PGR119G1632' => 'pgr', 'PGSC0003DMG400002719' => 'stu', 'PGSC0003DMG400009172' => 'stu', 'PGSC0003DMG400028264' => 'stu', 'PGSC0003DMG400038824' => 'stu', 'Phvul.001G186500' => 'pvu', 'Phvul.003G032300' => 'pvu', 'Phvul.007G223600' => 'pvu', 'Potri.001G150001' => 'ptr', 'Potri.006G116000' => 'ptr', 'Potri.008G025900' => 'ptr', 'Potri.010G234400' => 'ptr', 'Pp3c2_260' => 'ppa', 'Pp3c4_2820' => 'ppa', 'Pp3c6_18380' => 'ppa', 'Prupe.2G089400' => 'ppe', 'Prupe.3G291400' => 'ppe', 'Prupe.6G119100' => 'ppe', 'Prupe.7G005000' => 'ppe', 'Prupe.7G118000' => 'ppe', 'Psat0s3291g0200' => 'psa', 'Psat0s5991g0040' => 'psa', 'Psat3g035920' => 'psa', 'Psat3g051720' => 'psa', 'Psat4g061600' => 'psa', 'Psat5g004440' => 'psa', 'Psat5g021240' => 'psa', 'Psat5g254920' => 'psa', 'Psat6g079040' => 'psa', 'Psat6g177080' => 'psa', 'PSO063G2265' => 'pso', 'PSO339G3200' => 'pso', 'PSO339G5206' => 'pso', 'PSO384G4302' => 'pso', 'QL03p004227' => 'qlo', 'QL04p041091' => 'qlo', 'QL07p040602' => 'qlo', 'QL08p011555' => 'qlo', 'RcHm_v2.0_Chr3g0456601' => 'rch', 'RcHm_v2.0_Chr3g0456611' => 'rch', 'RcHm_v2.0_Chr3g0472091' => 'rch', 'RcHm_v2.0_Chr6g0267351' => 'rch', 'RcHm_v2.0_Chr6g0267361' => 'rch', 'RcHm_v2.0_Chr6g0267411' => 'rch', 'Rhsim02G0128300' => 'rsi', 'Rhsim02G0166200' => 'rsi', 'Rhsim03G0081500' => 'rsi', 'Rhsim03G0106400' => 'rsi', 'Rhsim04G0135900' => 'rsi', 'Rhsim07G0188900' => 'rsi', 'Rhsim13G0105000' => 'rsi', 'Sabra06G0090700' => 'sbr', 'Sabra08G0017600' => 'sbr', 'Sabra10G0181700' => 'sbr', 'SalBow3G3680' => 'sbo', 'SalBow5G0882' => 'sbo', 'SalBow6G6340' => 'sbo', 'Sc02g0001140' => 'sci', 'Sc06g0008920' => 'sci', 'Sc09g0005580' => 'sci', 'Sc20g0006010' => 'sci', 'Sed0001020' => 'sed', 'Sed0011723' => 'sed', 'Sed0020277' => 'sed', 'Sed0022197' => 'sed', 'Sed0026916' => 'sed', 'SEGI_00076' => 'sgi', 'SEGI_01508' => 'sgi', 'SEGI_15422' => 'sgi', 'SGA_v2.0_scaffold11G05541' => 'sas', 'SGA_v2.0_scaffold193G40703' => 'sas', 'SGA_v2.0_scaffold259G45831' => 'sas', 'SGA_v2.0_scaffold40G15408' => 'sas', 'SGA_v2.0_scaffold57G20202' => 'sas', 'SMO301G0038' => 'smo', 'Solyc03g123440.3' => 'sly', 'Solyc04g047780.1' => 'sly', 'Solyc04g047810.1' => 'sly', 'Solyc04g047820.1' => 'sly', 'Solyc04g047830.1' => 'sly', 'Solyc04g054860.1' => 'sly', 'Solyc04g054870.1' => 'sly', 'Solyc04g054875.1' => 'sly', 'Solyc09g009080.4' => 'sly', 'Solyc10g083630.2' => 'sly', 'Solyc11g007580.3' => 'sly', 'Sopen03g041220' => 'spe', 'Sopen04g017990' => 'spe', 'Sopen04g024670' => 'spe', 'Sopen09g003780' => 'spe', 'Sopen10g033100' => 'spe', 'Sopen11g003420' => 'spe', 'Sp4g18800' => 'spa', 'Sp6g38200' => 'spa', 'Sp7g31790' => 'spa', 'TAR369G0069' => 'tar', 'TAR374G1051' => 'tar', 'TAR374G1072' => 'tar', 'TAR374G1252' => 'tar', 'TAR623G1502' => 'tar', 'TAR633G1723' => 'tar', 'THA.LOC104800557' => 'tha', 'THA.LOC104816454' => 'tha', 'THA.LOC104816669' => 'tha', 'THA.LOC104816670' => 'tha', 'THA.LOC104827483' => 'tha', 'Thecc.01G161900' => 'tca', 'Thecc.05G080600' => 'tca', 'Thecc.09G291800' => 'tca', 'Thecc.10G101300' => 'tca', 'Thhalv10012472m.g' => 'esa', 'Thhalv10016139m.g' => 'esa', 'Thhalv10019961m.g' => 'esa', 'Thhalv10026936m.g' => 'esa', 'TPR.G10256' => 'tpr', 'TPR.G2504' => 'tpr', 'TPR.G32369' => 'tpr', 'TPR.G34611' => 'tpr', 'TPR.G5703' => 'tpr', 'TWI38G0218' => 'twi', 'TWI38G1634' => 'twi', 'TWI53G2113' => 'twi', 'TWI63G1581' => 'twi', 'TWI75G0699' => 'twi', 'TWI77G0704' => 'twi', 'TWI79G1587' => 'twi', 'unitig_27.g25399' => 'ugi', 'unitig_37.g12333' => 'ugi', 'vmacro07222' => 'vma', 'vmacro07365' => 'vma', 'vmacro08815' => 'vma', 'vmacro09352' => 'vma', 'VMungo0720G0212' => 'vmu', 'VMungo0720G0845' => 'vmu', 'VMungo1215G0844' => 'vmu', 'VMungo1383G2283' => 'vmu', 'Zm00001eb080650' => 'zma', 'Zm00001eb202980' => 'zma', 'Zm00001eb241240' => 'zma', 'Zm00001eb241310' => 'zma', 'Zm00001eb289030' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001201', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001201' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001201', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '520', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001201' ) ), 'genes' => array( 'A01p04360' => 'bna', 'A04p07990' => 'bna', 'A05p09310' => 'bna', 'A10p31520' => 'bna', 'Aa31csc22G50' => 'aar', 'Aa31csc22G60' => 'aar', 'Aa31csc22G70' => 'aar', 'Aa31csc22G80' => 'aar', 'Aa31LG11G5440' => 'aar', 'Aa31LG11G5450' => 'aar', 'Aa31LG2G16490' => 'aar', 'Aa31LG3G2540' => 'aar', 'Aa31LG5G21680' => 'aar', 'Aa31LG7G15440' => 'aar', 'Aa31LG7G15450' => 'aar', 'Aa31LG9G4630' => 'aar', 'Aa31LG9G4640' => 'aar', 'Aa31sc52G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3177' => 'aag', 'Actinidia06708' => 'ach', 'Actinidia18573' => 'ach', 'Actinidia18574' => 'ach', 'Actinidia28919' => 'ach', 'Actinidia31292' => 'ach', 'Actinidia31293' => 'ach', 'Actinidia31294' => 'ach', 'Actinidia33950' => 'ach', 'Actinidia34586' => 'ach', 'Actinidia34587' => 'ach', 'Ah.08g210980' => 'amhyb', 'Ah.16g107470' => 'amhyb', 'AL3G21300' => 'aly', 'AL4G32670' => 'aly', 'AL4G32680' => 'aly', 'AL6G14210' => 'aly', 'AL7G17320' => 'aly', 'Aqoxy1G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.66FLD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM3VD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUT3DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS0SHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8W5NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N246S2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R549UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBWK9U' => 'arhy', 'AT2G36490' => 'ath', 'AT3G10010' => 'ath', 'AT4G04957' => 'ath', 'AT4G34060' => 'ath', 'AT5G04560' => 'ath', 'ATR0820G039' => 'atr', 'ATR1149G052' => 'atr', 'Atru.chr12.965' => 'acertr', 'Atru.chr3.3382' => 'acertr', 'Atru.chr6.394' => 'acertr', 'Atru.chr8.1639' => 'acertr', 'AUR62002762' => 'cqu', 'AUR62004786' => 'cqu', 'AUR62023938' => 'cqu', 'AUR62028009' => 'cqu', 'AUR62028010' => 'cqu', 'AUR62033581' => 'cqu', 'AUR62037477' => 'cqu', 'AUR62038303' => 'cqu', 'AUR62041417' => 'cqu', 'BcaB02g09350' => 'bca', 'BcaB08g35661' => 'bca', 'BcaC01g01492' => 'bca', 'BcaC02g11765' => 'bca', 'BcaC06g32166' => 'bca', 'BcaNung03789' => 'bca', 'BcaNung06824' => 'bca', 'BcaNung07061' => 'bca', 'BolC1t00460H' => 'bol', 'BolC4t22808H' => 'bol', 'BolC9t59965H' => 'bol', 'BraA01t00425Z' => 'bra', 'BraA04t16488Z' => 'bra', 'BraA05t19888Z' => 'bra', 'BraA10t45198Z' => 'bra', 'C01p04760' => 'bna', 'C04p11600' => 'bna', 'C09p72210' => 'bna', 'CAN.G1138.12' => 'can', 'CAN.G135.68' => 'can', 'CAN.G282.14' => 'can', 'CAN.G344.2' => 'can', 'CAN.G668.49' => 'can', 'CAN.G824.26' => 'can', 'CAN.G824.27' => 'can', 'CANSAT25G0803' => 'cansat', 'CANSAT54G2606' => 'cansat', 'CANSAT56G1981' => 'cansat', 'CANSAT80G1516' => 'cansat', 'CARHR068350' => 'chi', 'CARHR084510' => 'chi', 'CARHR130800' => 'chi', 'CARHR133860' => 'chi', 'CARHR208710' => 'chi', 'CARHR259200' => 'chi', 'CARHR286790' => 'chi', 'CARHR286800' => 'chi', 'Carub.0003s0911' => 'cru', 'Carub.0004s1830' => 'cru', 'Carub.0004s1831' => 'cru', 'Carub.0006s0350' => 'cru', 'Carub.0007s0634' => 'cru', 'Ca_01678_v3' => 'car', 'Ca_10493_v3' => 'car', 'Ca_11125_v3' => 'car', 'Ca_11623_v3' => 'car', 'Ca_20517_v3' => 'car', 'Cc02_g10250' => 'ccan', 'Cc06_g05230' => 'ccan', 'CDE02G2714' => 'cde', 'CDE03G0091' => 'cde', 'CDE03G0262' => 'cde', 'CDE03G0461' => 'cde', 'CDE04G2541' => 'cde', 'CDE04G3083' => 'cde', 'CDE04G3509' => 'cde', 'CDE09G0105' => 'cde', 'Cfa010084' => 'cfa', 'Cfa011221' => 'cfa', 'Ciclev10010892m.g' => 'ccl', 'Ciclev10027676m.g' => 'ccl', 'Ciclev10030474m.g' => 'ccl', 'CiPaw.09G008500' => 'cil', 'CiPaw.13G036100' => 'cil', 'CiPaw.14G028400' => 'cil', 'ClCG02G021910' => 'cla', 'ClCG04G009770' => 'cla', 'ClCG05G021570' => 'cla', 'ClCG10G019400' => 'cla', 'COL.COLO4_27244' => 'col', 'COL.COLO4_28083' => 'col', 'COL.COLO4_29819' => 'col', 'COL.COLO4_30817' => 'col', 'Cpa.g.sc128.52' => 'cpa', 'Cpa.g.sc5.80' => 'cpa', 'Cpa.g.sc5.81' => 'cpa', 'Cpa.g.sc5.83' => 'cpa', 'Cre07.g355466' => 'cre', 'CsaV3_3G036780' => 'csa', 'CsaV3_5G035660' => 'csa', 'CsaV3_6G014730' => 'csa', 'CsaV3_6G040410' => 'csa', 'CSS0002130' => 'camsi', 'CSS0012668' => 'camsi', 'CSS0014168' => 'camsi', 'CSS0047502' => 'camsi', 'DCAR_000566' => 'dca', 'DCAR_004685' => 'dca', 'DCAR_006374' => 'dca', 'DCAR_013953' => 'dca', 'DCAR_014734' => 'dca', 'DCAR_017626' => 'dca', 'DCAR_023271' => 'dca', 'DCAR_023273' => 'dca', 'DCAR_029993' => 'dca', 'Dinv03195' => 'din', 'Dinv19826' => 'din', 'Dinv20843' => 'din', 'Dinv21259' => 'din', 'Dinv21260' => 'din', 'Dinv23941' => 'din', 'Dinv29423' => 'din', 'Dinv30660' => 'din', 'Duzib093G0950' => 'dzi', 'Duzib114G0475' => 'dzi', 'Duzib168G1001' => 'dzi', 'ECA232G0849' => 'eca', 'ECA233G0191' => 'eca', 'ECA236G3687' => 'eca', 'ECA238G1134' => 'eca', 'ECA238G4359' => 'eca', 'ECA240G1852' => 'eca', 'EL10Ac4g08943' => 'bvu', 'EL10Ac5g11585' => 'bvu', 'EL10Ac5g12151' => 'bvu', 'EL10Ac7g16995' => 'bvu', 'EL10Ac9g21080' => 'bvu', 'Eucgr.A01547' => 'egr', 'Eucgr.J00426' => 'egr', 'Eucgr.J01016' => 'egr', 'FAN02G1301' => 'fan', 'FAN02G3204' => 'fan', 'FAN04G1023' => 'fan', 'FAN05G1662' => 'fan', 'FAN05G3005' => 'fan', 'FAN05G3013' => 'fan', 'FAN05G4586' => 'fan', 'FAN08G3428' => 'fan', 'FAN09G1539' => 'fan', 'FAN09G4664' => 'fan', 'FAN11G1782' => 'fan', 'FAN14G0799' => 'fan', 'FAN14G4458' => 'fan', 'FAN15G3379' => 'fan', 'FAN16G0828' => 'fan', 'FAN18G0408' => 'fan', 'FAN20G2479' => 'fan', 'FAN21G3547' => 'fan', 'FAN24G3154' => 'fan', 'FAN27G1454' => 'fan', 'FAN27G2238' => 'fan', 'FvH4_2g10170' => 'fve', 'FvH4_3g04410' => 'fve', 'FvH4_5g29900' => 'fve', 'FvH4_6g07060' => 'fve', 'FvH4_6g17860' => 'fve', 'Glyma.03G190800' => 'gma', 'Glyma.10G065900' => 'gma', 'Glyma.10G202150' => 'gma', 'Glyma.13G151000' => 'gma', 'Glyma.20G188300' => 'gma', 'Gohir.A01G129700' => 'ghi', 'Gohir.A04G066400' => 'ghi', 'Gohir.A05G083800' => 'ghi', 'Gohir.A09G136700' => 'ghi', 'Gohir.D01G119000' => 'ghi', 'Gohir.D04G104500' => 'ghi', 'Gohir.D05G086701' => 'ghi', 'Gohir.D09G137800' => 'ghi', 'Gorai.002G145100' => 'gra', 'Gorai.006G158300' => 'gra', 'Gorai.009G088400' => 'gra', 'Gorai.009G408300' => 'gra', 'GSVIVG01031400001' => 'vvi', 'GSVIVG01033777001' => 'vvi', 'GSVIVG01034713001' => 'vvi', 'HanXRQChr01g0018671' => 'han', 'HanXRQChr04g0108701' => 'han', 'HanXRQChr07g0202991' => 'han', 'HanXRQChr11g0334091' => 'han', 'HanXRQChr13g0400001' => 'han', 'HanXRQChr14g0432601' => 'han', 'HanXRQChr14g0456351' => 'han', 'HanXRQChr16g0498811' => 'han', 'Haze_02614' => 'cav', 'Haze_19533' => 'cav', 'Haze_23450' => 'cav', 'Hma1.2p1_0567F.1_g180040' => 'hma', 'Hma1.2p1_0725F.1_g208850' => 'hma', 'Hma1.2p1_0927F.1_g237650' => 'hma', 'HPP92_005760' => 'vpl', 'HPP92_005761' => 'vpl', 'HPP92_009314' => 'vpl', 'HPP92_009315' => 'vpl', 'HPP92_016165' => 'vpl', 'HPP92_016166' => 'vpl', 'HPP92_016167' => 'vpl', 'HPP92_026209' => 'vpl', 'HPP92_026210' => 'vpl', 'HPP92_026211' => 'vpl', 'Hund04064' => 'sun', 'Hund07689' => 'sun', 'Lalb_Chr01g0018331' => 'lal', 'Lalb_Chr02g0151321' => 'lal', 'Lalb_Chr02g0151331' => 'lal', 'Lalb_Chr02g0151341' => 'lal', 'Lalb_Chr02g0151351' => 'lal', 'Lalb_Chr19g0128911' => 'lal', 'Lalb_Chr19g0128921' => 'lal', 'Lalb_Chr19g0128931' => 'lal', 'Lalb_Chr21g0315671' => 'lal', 'Lj1A221T46' => 'lonja', 'Lj1g0027290' => 'lja', 'Lj2A129T52' => 'lonja', 'Lj3A1003T41' => 'lonja', 'Lj3A932G50' => 'lonja', 'Lj3g0024881' => 'lja', 'Lj5g0002552' => 'lja', 'Lj5g0003988' => 'lja', 'Lj5g0006180' => 'lja', 'Lj5g0026634' => 'lja', 'Lsat_1_v5_gn_0_17001' => 'lsa', 'Lsat_1_v5_gn_2_102681' => 'lsa', 'Lsat_1_v5_gn_2_21401' => 'lsa', 'Lsat_1_v5_gn_2_23100' => 'lsa', 'Lsat_1_v5_gn_3_76420' => 'lsa', 'Lsat_1_v5_gn_4_110941' => 'lsa', 'Lsat_1_v5_gn_4_121940' => 'lsa', 'Lsat_1_v5_gn_5_106621' => 'lsa', 'Lsat_1_v5_gn_6_21180' => 'lsa', 'Lsat_1_v5_gn_6_27040' => 'lsa', 'Lsat_1_v5_gn_6_57640' => 'lsa', 'Lsat_1_v5_gn_6_57660' => 'lsa', 'Lsat_1_v5_gn_6_95000' => 'lsa', 'Lsat_1_v5_gn_7_68960' => 'lsa', 'Lsat_1_v5_gn_9_45340' => 'lsa', 'Lsat_1_v5_gn_9_79861' => 'lsa', 'Manes.04G008900' => 'mes', 'Manes.07G091800' => 'mes', 'Manes.08G020500' => 'mes', 'Manes.09G060800' => 'mes', 'Manes.10G055200' => 'mes', 'Manes.17G117800' => 'mes', 'Mapoly0005s0045' => 'mpo', 'Mapoly0018s0032' => 'mpo', 'MCO11G457' => 'mco', 'MD02G1245300' => 'mdo', 'MD02G1245400' => 'mdo', 'MD05G1004100' => 'mdo', 'MD07G1071800' => 'mdo', 'MD09G1259000' => 'mdo', 'MD09G1259100' => 'mdo', 'MD11G1157400' => 'mdo', 'MD12G1017600' => 'mdo', 'MD14G1015300' => 'mdo', 'MD17G1253500' => 'mdo', 'MD17G1253600' => 'mdo', 'Medtr1g061220' => 'mtr', 'Medtr1g492760' => 'mtr', 'Medtr2g008920' => 'mtr', 'Medtr2g008930' => 'mtr', 'Medtr2g075880' => 'mtr', 'Medtr2g075885' => 'mtr', 'Medtr2g075890' => 'mtr', 'Medtr2g084845' => 'mtr', 'Medtr2g099840' => 'mtr', 'Medtr2g099850' => 'mtr', 'Medtr2g099900' => 'mtr', 'Medtr5g095880' => 'mtr', 'Medtr6g088520' => 'mtr', 'Medtr6g088650' => 'mtr', 'Medtr7g005880' => 'mtr', 'Medtr7g103680' => 'mtr', 'MELO3C009432.2' => 'cme', 'MELO3C012368.2' => 'cme', 'MELO3C021451.2' => 'cme', 'MELO3C024516.2' => 'cme', 'Migut.D02337' => 'egut', 'Migut.F00888' => 'egut', 'Migut.J00987' => 'egut', 'Migut.L00220' => 'egut', 'Migut.L00221' => 'egut', 'Migut.L00609' => 'egut', 'MSTRG.19228' => 'ama', 'MSTRG.21064' => 'ama', 'MSTRG.9109' => 'ama', 'Nitab4.5_0000132g0200' => 'nta', 'Nitab4.5_0000233g0200' => 'nta', 'Nitab4.5_0001807g0090' => 'nta', 'Nitab4.5_0001922g0010' => 'nta', 'Nitab4.5_0002259g0070' => 'nta', 'Nitab4.5_0003987g0020' => 'nta', 'Nitab4.5_0005311g0020' => 'nta', 'Nitab4.5_0005460g0030' => 'nta', 'Nitab4.5_0006360g0050' => 'nta', 'Nitab4.5_0009829g0020' => 'nta', 'Nitab4.5_0010583g0010' => 'nta', 'Nn1g00052' => 'nnu', 'Nn1g05905' => 'nnu', 'Nn1g09481' => 'nnu', 'Nn2g13995' => 'nnu', 'Nn6g33515' => 'nnu', 'Oeu026559.4' => 'oeu', 'Oeu027978.3' => 'oeu', 'Oeu032421.3' => 'oeu', 'Oeu037536.1' => 'oeu', 'Oeu040537.2' => 'oeu', 'Oeu040540.1' => 'oeu', 'Oeu050180.1' => 'oeu', 'Oeu059852.1' => 'oeu', 'Os01g0218032' => 'osa', 'Os02g0494700' => 'osa', 'Os02g0496500' => 'osa', 'Os05g0445900' => 'osa', 'Os05g0446550' => 'osa', 'Os05g0446600' => 'osa', 'Peaxi162Scf00012g01927' => 'pax', 'Peaxi162Scf00017g00412' => 'pax', 'Peaxi162Scf00038g02141' => 'pax', 'Peaxi162Scf00110g01921' => 'pax', 'Peaxi162Scf00244g00044' => 'pax', 'Peaxi162Scf00433g00067' => 'pax', 'PGR004G0133' => 'pgr', 'PGR044G1748' => 'pgr', 'PGR119G1632' => 'pgr', 'PGSC0003DMG400002719' => 'stu', 'PGSC0003DMG400009172' => 'stu', 'PGSC0003DMG400028264' => 'stu', 'PGSC0003DMG400038824' => 'stu', 'Phvul.001G186500' => 'pvu', 'Phvul.003G032300' => 'pvu', 'Phvul.007G223600' => 'pvu', 'Potri.001G150001' => 'ptr', 'Potri.006G116000' => 'ptr', 'Potri.008G025900' => 'ptr', 'Potri.010G234400' => 'ptr', 'Pp3c2_260' => 'ppa', 'Pp3c4_2820' => 'ppa', 'Pp3c6_18380' => 'ppa', 'Prupe.2G089400' => 'ppe', 'Prupe.3G291400' => 'ppe', 'Prupe.6G119100' => 'ppe', 'Prupe.7G005000' => 'ppe', 'Prupe.7G118000' => 'ppe', 'Psat0s3291g0200' => 'psa', 'Psat0s5991g0040' => 'psa', 'Psat3g035920' => 'psa', 'Psat3g051720' => 'psa', 'Psat4g061600' => 'psa', 'Psat5g004440' => 'psa', 'Psat5g021240' => 'psa', 'Psat5g254920' => 'psa', 'Psat6g079040' => 'psa', 'Psat6g177080' => 'psa', 'PSO063G2265' => 'pso', 'PSO339G3200' => 'pso', 'PSO339G5206' => 'pso', 'PSO384G4302' => 'pso', 'QL03p004227' => 'qlo', 'QL04p041091' => 'qlo', 'QL07p040602' => 'qlo', 'QL08p011555' => 'qlo', 'RcHm_v2.0_Chr3g0456601' => 'rch', 'RcHm_v2.0_Chr3g0456611' => 'rch', 'RcHm_v2.0_Chr3g0472091' => 'rch', 'RcHm_v2.0_Chr6g0267351' => 'rch', 'RcHm_v2.0_Chr6g0267361' => 'rch', 'RcHm_v2.0_Chr6g0267411' => 'rch', 'Rhsim02G0128300' => 'rsi', 'Rhsim02G0166200' => 'rsi', 'Rhsim03G0081500' => 'rsi', 'Rhsim03G0106400' => 'rsi', 'Rhsim04G0135900' => 'rsi', 'Rhsim07G0188900' => 'rsi', 'Rhsim13G0105000' => 'rsi', 'Sabra06G0090700' => 'sbr', 'Sabra08G0017600' => 'sbr', 'Sabra10G0181700' => 'sbr', 'SalBow3G3680' => 'sbo', 'SalBow5G0882' => 'sbo', 'SalBow6G6340' => 'sbo', 'Sc02g0001140' => 'sci', 'Sc06g0008920' => 'sci', 'Sc09g0005580' => 'sci', 'Sc20g0006010' => 'sci', 'Sed0001020' => 'sed', 'Sed0011723' => 'sed', 'Sed0020277' => 'sed', 'Sed0022197' => 'sed', 'Sed0026916' => 'sed', 'SEGI_00076' => 'sgi', 'SEGI_01508' => 'sgi', 'SEGI_15422' => 'sgi', 'SGA_v2.0_scaffold11G05541' => 'sas', 'SGA_v2.0_scaffold193G40703' => 'sas', 'SGA_v2.0_scaffold259G45831' => 'sas', 'SGA_v2.0_scaffold40G15408' => 'sas', 'SGA_v2.0_scaffold57G20202' => 'sas', 'SMO301G0038' => 'smo', 'Solyc03g123440.3' => 'sly', 'Solyc04g047780.1' => 'sly', 'Solyc04g047810.1' => 'sly', 'Solyc04g047820.1' => 'sly', 'Solyc04g047830.1' => 'sly', 'Solyc04g054860.1' => 'sly', 'Solyc04g054870.1' => 'sly', 'Solyc04g054875.1' => 'sly', 'Solyc09g009080.4' => 'sly', 'Solyc10g083630.2' => 'sly', 'Solyc11g007580.3' => 'sly', 'Sopen03g041220' => 'spe', 'Sopen04g017990' => 'spe', 'Sopen04g024670' => 'spe', 'Sopen09g003780' => 'spe', 'Sopen10g033100' => 'spe', 'Sopen11g003420' => 'spe', 'Sp4g18800' => 'spa', 'Sp6g38200' => 'spa', 'Sp7g31790' => 'spa', 'TAR369G0069' => 'tar', 'TAR374G1051' => 'tar', 'TAR374G1072' => 'tar', 'TAR374G1252' => 'tar', 'TAR623G1502' => 'tar', 'TAR633G1723' => 'tar', 'THA.LOC104800557' => 'tha', 'THA.LOC104816454' => 'tha', 'THA.LOC104816669' => 'tha', 'THA.LOC104816670' => 'tha', 'THA.LOC104827483' => 'tha', 'Thecc.01G161900' => 'tca', 'Thecc.05G080600' => 'tca', 'Thecc.09G291800' => 'tca', 'Thecc.10G101300' => 'tca', 'Thhalv10012472m.g' => 'esa', 'Thhalv10016139m.g' => 'esa', 'Thhalv10019961m.g' => 'esa', 'Thhalv10026936m.g' => 'esa', 'TPR.G10256' => 'tpr', 'TPR.G2504' => 'tpr', 'TPR.G32369' => 'tpr', 'TPR.G34611' => 'tpr', 'TPR.G5703' => 'tpr', 'TWI38G0218' => 'twi', 'TWI38G1634' => 'twi', 'TWI53G2113' => 'twi', 'TWI63G1581' => 'twi', 'TWI75G0699' => 'twi', 'TWI77G0704' => 'twi', 'TWI79G1587' => 'twi', 'unitig_27.g25399' => 'ugi', 'unitig_37.g12333' => 'ugi', 'vmacro07222' => 'vma', 'vmacro07365' => 'vma', 'vmacro08815' => 'vma', 'vmacro09352' => 'vma', 'VMungo0720G0212' => 'vmu', 'VMungo0720G0845' => 'vmu', 'VMungo1215G0844' => 'vmu', 'VMungo1383G2283' => 'vmu', 'Zm00001eb080650' => 'zma', 'Zm00001eb202980' => 'zma', 'Zm00001eb241240' => 'zma', 'Zm00001eb241310' => 'zma', 'Zm00001eb289030' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001201' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001201' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001201' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001201' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001201', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '520', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p04360' => 'bna', 'A04p07990' => 'bna', 'A05p09310' => 'bna', 'A10p31520' => 'bna', 'Aa31csc22G50' => 'aar', 'Aa31csc22G60' => 'aar', 'Aa31csc22G70' => 'aar', 'Aa31csc22G80' => 'aar', 'Aa31LG11G5440' => 'aar', 'Aa31LG11G5450' => 'aar', 'Aa31LG2G16490' => 'aar', 'Aa31LG3G2540' => 'aar', 'Aa31LG5G21680' => 'aar', 'Aa31LG7G15440' => 'aar', 'Aa31LG7G15450' => 'aar', 'Aa31LG9G4630' => 'aar', 'Aa31LG9G4640' => 'aar', 'Aa31sc52G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3177' => 'aag', 'Actinidia06708' => 'ach', 'Actinidia18573' => 'ach', 'Actinidia18574' => 'ach', 'Actinidia28919' => 'ach', 'Actinidia31292' => 'ach', 'Actinidia31293' => 'ach', 'Actinidia31294' => 'ach', 'Actinidia33950' => 'ach', 'Actinidia34586' => 'ach', 'Actinidia34587' => 'ach', 'Ah.08g210980' => 'amhyb', 'Ah.16g107470' => 'amhyb', 'AL3G21300' => 'aly', 'AL4G32670' => 'aly', 'AL4G32680' => 'aly', 'AL6G14210' => 'aly', 'AL7G17320' => 'aly', 'Aqoxy1G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.66FLD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM3VD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUT3DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS0SHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8W5NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N246S2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R549UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBWK9U' => 'arhy', 'AT2G36490' => 'ath', 'AT3G10010' => 'ath', 'AT4G04957' => 'ath', 'AT4G34060' => 'ath', 'AT5G04560' => 'ath', 'ATR0820G039' => 'atr', 'ATR1149G052' => 'atr', 'Atru.chr12.965' => 'acertr', 'Atru.chr3.3382' => 'acertr', 'Atru.chr6.394' => 'acertr', 'Atru.chr8.1639' => 'acertr', 'AUR62002762' => 'cqu', 'AUR62004786' => 'cqu', 'AUR62023938' => 'cqu', 'AUR62028009' => 'cqu', 'AUR62028010' => 'cqu', 'AUR62033581' => 'cqu', 'AUR62037477' => 'cqu', 'AUR62038303' => 'cqu', 'AUR62041417' => 'cqu', 'BcaB02g09350' => 'bca', 'BcaB08g35661' => 'bca', 'BcaC01g01492' => 'bca', 'BcaC02g11765' => 'bca', 'BcaC06g32166' => 'bca', 'BcaNung03789' => 'bca', 'BcaNung06824' => 'bca', 'BcaNung07061' => 'bca', 'BolC1t00460H' => 'bol', 'BolC4t22808H' => 'bol', 'BolC9t59965H' => 'bol', 'BraA01t00425Z' => 'bra', 'BraA04t16488Z' => 'bra', 'BraA05t19888Z' => 'bra', 'BraA10t45198Z' => 'bra', 'C01p04760' => 'bna', 'C04p11600' => 'bna', 'C09p72210' => 'bna', 'CAN.G1138.12' => 'can', 'CAN.G135.68' => 'can', 'CAN.G282.14' => 'can', 'CAN.G344.2' => 'can', 'CAN.G668.49' => 'can', 'CAN.G824.26' => 'can', 'CAN.G824.27' => 'can', 'CANSAT25G0803' => 'cansat', 'CANSAT54G2606' => 'cansat', 'CANSAT56G1981' => 'cansat', 'CANSAT80G1516' => 'cansat', 'CARHR068350' => 'chi', 'CARHR084510' => 'chi', 'CARHR130800' => 'chi', 'CARHR133860' => 'chi', 'CARHR208710' => 'chi', 'CARHR259200' => 'chi', 'CARHR286790' => 'chi', 'CARHR286800' => 'chi', 'Carub.0003s0911' => 'cru', 'Carub.0004s1830' => 'cru', 'Carub.0004s1831' => 'cru', 'Carub.0006s0350' => 'cru', 'Carub.0007s0634' => 'cru', 'Ca_01678_v3' => 'car', 'Ca_10493_v3' => 'car', 'Ca_11125_v3' => 'car', 'Ca_11623_v3' => 'car', 'Ca_20517_v3' => 'car', 'Cc02_g10250' => 'ccan', 'Cc06_g05230' => 'ccan', 'CDE02G2714' => 'cde', 'CDE03G0091' => 'cde', 'CDE03G0262' => 'cde', 'CDE03G0461' => 'cde', 'CDE04G2541' => 'cde', 'CDE04G3083' => 'cde', 'CDE04G3509' => 'cde', 'CDE09G0105' => 'cde', 'Cfa010084' => 'cfa', 'Cfa011221' => 'cfa', 'Ciclev10010892m.g' => 'ccl', 'Ciclev10027676m.g' => 'ccl', 'Ciclev10030474m.g' => 'ccl', 'CiPaw.09G008500' => 'cil', 'CiPaw.13G036100' => 'cil', 'CiPaw.14G028400' => 'cil', 'ClCG02G021910' => 'cla', 'ClCG04G009770' => 'cla', 'ClCG05G021570' => 'cla', 'ClCG10G019400' => 'cla', 'COL.COLO4_27244' => 'col', 'COL.COLO4_28083' => 'col', 'COL.COLO4_29819' => 'col', 'COL.COLO4_30817' => 'col', 'Cpa.g.sc128.52' => 'cpa', 'Cpa.g.sc5.80' => 'cpa', 'Cpa.g.sc5.81' => 'cpa', 'Cpa.g.sc5.83' => 'cpa', 'Cre07.g355466' => 'cre', 'CsaV3_3G036780' => 'csa', 'CsaV3_5G035660' => 'csa', 'CsaV3_6G014730' => 'csa', 'CsaV3_6G040410' => 'csa', 'CSS0002130' => 'camsi', 'CSS0012668' => 'camsi', 'CSS0014168' => 'camsi', 'CSS0047502' => 'camsi', 'DCAR_000566' => 'dca', 'DCAR_004685' => 'dca', 'DCAR_006374' => 'dca', 'DCAR_013953' => 'dca', 'DCAR_014734' => 'dca', 'DCAR_017626' => 'dca', 'DCAR_023271' => 'dca', 'DCAR_023273' => 'dca', 'DCAR_029993' => 'dca', 'Dinv03195' => 'din', 'Dinv19826' => 'din', 'Dinv20843' => 'din', 'Dinv21259' => 'din', 'Dinv21260' => 'din', 'Dinv23941' => 'din', 'Dinv29423' => 'din', 'Dinv30660' => 'din', 'Duzib093G0950' => 'dzi', 'Duzib114G0475' => 'dzi', 'Duzib168G1001' => 'dzi', 'ECA232G0849' => 'eca', 'ECA233G0191' => 'eca', 'ECA236G3687' => 'eca', 'ECA238G1134' => 'eca', 'ECA238G4359' => 'eca', 'ECA240G1852' => 'eca', 'EL10Ac4g08943' => 'bvu', 'EL10Ac5g11585' => 'bvu', 'EL10Ac5g12151' => 'bvu', 'EL10Ac7g16995' => 'bvu', 'EL10Ac9g21080' => 'bvu', 'Eucgr.A01547' => 'egr', 'Eucgr.J00426' => 'egr', 'Eucgr.J01016' => 'egr', 'FAN02G1301' => 'fan', 'FAN02G3204' => 'fan', 'FAN04G1023' => 'fan', 'FAN05G1662' => 'fan', 'FAN05G3005' => 'fan', 'FAN05G3013' => 'fan', 'FAN05G4586' => 'fan', 'FAN08G3428' => 'fan', 'FAN09G1539' => 'fan', 'FAN09G4664' => 'fan', 'FAN11G1782' => 'fan', 'FAN14G0799' => 'fan', 'FAN14G4458' => 'fan', 'FAN15G3379' => 'fan', 'FAN16G0828' => 'fan', 'FAN18G0408' => 'fan', 'FAN20G2479' => 'fan', 'FAN21G3547' => 'fan', 'FAN24G3154' => 'fan', 'FAN27G1454' => 'fan', 'FAN27G2238' => 'fan', 'FvH4_2g10170' => 'fve', 'FvH4_3g04410' => 'fve', 'FvH4_5g29900' => 'fve', 'FvH4_6g07060' => 'fve', 'FvH4_6g17860' => 'fve', 'Glyma.03G190800' => 'gma', 'Glyma.10G065900' => 'gma', 'Glyma.10G202150' => 'gma', 'Glyma.13G151000' => 'gma', 'Glyma.20G188300' => 'gma', 'Gohir.A01G129700' => 'ghi', 'Gohir.A04G066400' => 'ghi', 'Gohir.A05G083800' => 'ghi', 'Gohir.A09G136700' => 'ghi', 'Gohir.D01G119000' => 'ghi', 'Gohir.D04G104500' => 'ghi', 'Gohir.D05G086701' => 'ghi', 'Gohir.D09G137800' => 'ghi', 'Gorai.002G145100' => 'gra', 'Gorai.006G158300' => 'gra', 'Gorai.009G088400' => 'gra', 'Gorai.009G408300' => 'gra', 'GSVIVG01031400001' => 'vvi', 'GSVIVG01033777001' => 'vvi', 'GSVIVG01034713001' => 'vvi', 'HanXRQChr01g0018671' => 'han', 'HanXRQChr04g0108701' => 'han', 'HanXRQChr07g0202991' => 'han', 'HanXRQChr11g0334091' => 'han', 'HanXRQChr13g0400001' => 'han', 'HanXRQChr14g0432601' => 'han', 'HanXRQChr14g0456351' => 'han', 'HanXRQChr16g0498811' => 'han', 'Haze_02614' => 'cav', 'Haze_19533' => 'cav', 'Haze_23450' => 'cav', 'Hma1.2p1_0567F.1_g180040' => 'hma', 'Hma1.2p1_0725F.1_g208850' => 'hma', 'Hma1.2p1_0927F.1_g237650' => 'hma', 'HPP92_005760' => 'vpl', 'HPP92_005761' => 'vpl', 'HPP92_009314' => 'vpl', 'HPP92_009315' => 'vpl', 'HPP92_016165' => 'vpl', 'HPP92_016166' => 'vpl', 'HPP92_016167' => 'vpl', 'HPP92_026209' => 'vpl', 'HPP92_026210' => 'vpl', 'HPP92_026211' => 'vpl', 'Hund04064' => 'sun', 'Hund07689' => 'sun', 'Lalb_Chr01g0018331' => 'lal', 'Lalb_Chr02g0151321' => 'lal', 'Lalb_Chr02g0151331' => 'lal', 'Lalb_Chr02g0151341' => 'lal', 'Lalb_Chr02g0151351' => 'lal', 'Lalb_Chr19g0128911' => 'lal', 'Lalb_Chr19g0128921' => 'lal', 'Lalb_Chr19g0128931' => 'lal', 'Lalb_Chr21g0315671' => 'lal', 'Lj1A221T46' => 'lonja', 'Lj1g0027290' => 'lja', 'Lj2A129T52' => 'lonja', 'Lj3A1003T41' => 'lonja', 'Lj3A932G50' => 'lonja', 'Lj3g0024881' => 'lja', 'Lj5g0002552' => 'lja', 'Lj5g0003988' => 'lja', 'Lj5g0006180' => 'lja', 'Lj5g0026634' => 'lja', 'Lsat_1_v5_gn_0_17001' => 'lsa', 'Lsat_1_v5_gn_2_102681' => 'lsa', 'Lsat_1_v5_gn_2_21401' => 'lsa', 'Lsat_1_v5_gn_2_23100' => 'lsa', 'Lsat_1_v5_gn_3_76420' => 'lsa', 'Lsat_1_v5_gn_4_110941' => 'lsa', 'Lsat_1_v5_gn_4_121940' => 'lsa', 'Lsat_1_v5_gn_5_106621' => 'lsa', 'Lsat_1_v5_gn_6_21180' => 'lsa', 'Lsat_1_v5_gn_6_27040' => 'lsa', 'Lsat_1_v5_gn_6_57640' => 'lsa', 'Lsat_1_v5_gn_6_57660' => 'lsa', 'Lsat_1_v5_gn_6_95000' => 'lsa', 'Lsat_1_v5_gn_7_68960' => 'lsa', 'Lsat_1_v5_gn_9_45340' => 'lsa', 'Lsat_1_v5_gn_9_79861' => 'lsa', 'Manes.04G008900' => 'mes', 'Manes.07G091800' => 'mes', 'Manes.08G020500' => 'mes', 'Manes.09G060800' => 'mes', 'Manes.10G055200' => 'mes', 'Manes.17G117800' => 'mes', 'Mapoly0005s0045' => 'mpo', 'Mapoly0018s0032' => 'mpo', 'MCO11G457' => 'mco', 'MD02G1245300' => 'mdo', 'MD02G1245400' => 'mdo', 'MD05G1004100' => 'mdo', 'MD07G1071800' => 'mdo', 'MD09G1259000' => 'mdo', 'MD09G1259100' => 'mdo', 'MD11G1157400' => 'mdo', 'MD12G1017600' => 'mdo', 'MD14G1015300' => 'mdo', 'MD17G1253500' => 'mdo', 'MD17G1253600' => 'mdo', 'Medtr1g061220' => 'mtr', 'Medtr1g492760' => 'mtr', 'Medtr2g008920' => 'mtr', 'Medtr2g008930' => 'mtr', 'Medtr2g075880' => 'mtr', 'Medtr2g075885' => 'mtr', 'Medtr2g075890' => 'mtr', 'Medtr2g084845' => 'mtr', 'Medtr2g099840' => 'mtr', 'Medtr2g099850' => 'mtr', 'Medtr2g099900' => 'mtr', 'Medtr5g095880' => 'mtr', 'Medtr6g088520' => 'mtr', 'Medtr6g088650' => 'mtr', 'Medtr7g005880' => 'mtr', 'Medtr7g103680' => 'mtr', 'MELO3C009432.2' => 'cme', 'MELO3C012368.2' => 'cme', 'MELO3C021451.2' => 'cme', 'MELO3C024516.2' => 'cme', 'Migut.D02337' => 'egut', 'Migut.F00888' => 'egut', 'Migut.J00987' => 'egut', 'Migut.L00220' => 'egut', 'Migut.L00221' => 'egut', 'Migut.L00609' => 'egut', 'MSTRG.19228' => 'ama', 'MSTRG.21064' => 'ama', 'MSTRG.9109' => 'ama', 'Nitab4.5_0000132g0200' => 'nta', 'Nitab4.5_0000233g0200' => 'nta', 'Nitab4.5_0001807g0090' => 'nta', 'Nitab4.5_0001922g0010' => 'nta', 'Nitab4.5_0002259g0070' => 'nta', 'Nitab4.5_0003987g0020' => 'nta', 'Nitab4.5_0005311g0020' => 'nta', 'Nitab4.5_0005460g0030' => 'nta', 'Nitab4.5_0006360g0050' => 'nta', 'Nitab4.5_0009829g0020' => 'nta', 'Nitab4.5_0010583g0010' => 'nta', 'Nn1g00052' => 'nnu', 'Nn1g05905' => 'nnu', 'Nn1g09481' => 'nnu', 'Nn2g13995' => 'nnu', 'Nn6g33515' => 'nnu', 'Oeu026559.4' => 'oeu', 'Oeu027978.3' => 'oeu', 'Oeu032421.3' => 'oeu', 'Oeu037536.1' => 'oeu', 'Oeu040537.2' => 'oeu', 'Oeu040540.1' => 'oeu', 'Oeu050180.1' => 'oeu', 'Oeu059852.1' => 'oeu', 'Os01g0218032' => 'osa', 'Os02g0494700' => 'osa', 'Os02g0496500' => 'osa', 'Os05g0445900' => 'osa', 'Os05g0446550' => 'osa', 'Os05g0446600' => 'osa', 'Peaxi162Scf00012g01927' => 'pax', 'Peaxi162Scf00017g00412' => 'pax', 'Peaxi162Scf00038g02141' => 'pax', 'Peaxi162Scf00110g01921' => 'pax', 'Peaxi162Scf00244g00044' => 'pax', 'Peaxi162Scf00433g00067' => 'pax', 'PGR004G0133' => 'pgr', 'PGR044G1748' => 'pgr', 'PGR119G1632' => 'pgr', 'PGSC0003DMG400002719' => 'stu', 'PGSC0003DMG400009172' => 'stu', 'PGSC0003DMG400028264' => 'stu', 'PGSC0003DMG400038824' => 'stu', 'Phvul.001G186500' => 'pvu', 'Phvul.003G032300' => 'pvu', 'Phvul.007G223600' => 'pvu', 'Potri.001G150001' => 'ptr', 'Potri.006G116000' => 'ptr', 'Potri.008G025900' => 'ptr', 'Potri.010G234400' => 'ptr', 'Pp3c2_260' => 'ppa', 'Pp3c4_2820' => 'ppa', 'Pp3c6_18380' => 'ppa', 'Prupe.2G089400' => 'ppe', 'Prupe.3G291400' => 'ppe', 'Prupe.6G119100' => 'ppe', 'Prupe.7G005000' => 'ppe', 'Prupe.7G118000' => 'ppe', 'Psat0s3291g0200' => 'psa', 'Psat0s5991g0040' => 'psa', 'Psat3g035920' => 'psa', 'Psat3g051720' => 'psa', 'Psat4g061600' => 'psa', 'Psat5g004440' => 'psa', 'Psat5g021240' => 'psa', 'Psat5g254920' => 'psa', 'Psat6g079040' => 'psa', 'Psat6g177080' => 'psa', 'PSO063G2265' => 'pso', 'PSO339G3200' => 'pso', 'PSO339G5206' => 'pso', 'PSO384G4302' => 'pso', 'QL03p004227' => 'qlo', 'QL04p041091' => 'qlo', 'QL07p040602' => 'qlo', 'QL08p011555' => 'qlo', 'RcHm_v2.0_Chr3g0456601' => 'rch', 'RcHm_v2.0_Chr3g0456611' => 'rch', 'RcHm_v2.0_Chr3g0472091' => 'rch', 'RcHm_v2.0_Chr6g0267351' => 'rch', 'RcHm_v2.0_Chr6g0267361' => 'rch', 'RcHm_v2.0_Chr6g0267411' => 'rch', 'Rhsim02G0128300' => 'rsi', 'Rhsim02G0166200' => 'rsi', 'Rhsim03G0081500' => 'rsi', 'Rhsim03G0106400' => 'rsi', 'Rhsim04G0135900' => 'rsi', 'Rhsim07G0188900' => 'rsi', 'Rhsim13G0105000' => 'rsi', 'Sabra06G0090700' => 'sbr', 'Sabra08G0017600' => 'sbr', 'Sabra10G0181700' => 'sbr', 'SalBow3G3680' => 'sbo', 'SalBow5G0882' => 'sbo', 'SalBow6G6340' => 'sbo', 'Sc02g0001140' => 'sci', 'Sc06g0008920' => 'sci', 'Sc09g0005580' => 'sci', 'Sc20g0006010' => 'sci', 'Sed0001020' => 'sed', 'Sed0011723' => 'sed', 'Sed0020277' => 'sed', 'Sed0022197' => 'sed', 'Sed0026916' => 'sed', 'SEGI_00076' => 'sgi', 'SEGI_01508' => 'sgi', 'SEGI_15422' => 'sgi', 'SGA_v2.0_scaffold11G05541' => 'sas', 'SGA_v2.0_scaffold193G40703' => 'sas', 'SGA_v2.0_scaffold259G45831' => 'sas', 'SGA_v2.0_scaffold40G15408' => 'sas', 'SGA_v2.0_scaffold57G20202' => 'sas', 'SMO301G0038' => 'smo', 'Solyc03g123440.3' => 'sly', 'Solyc04g047780.1' => 'sly', 'Solyc04g047810.1' => 'sly', 'Solyc04g047820.1' => 'sly', 'Solyc04g047830.1' => 'sly', 'Solyc04g054860.1' => 'sly', 'Solyc04g054870.1' => 'sly', 'Solyc04g054875.1' => 'sly', 'Solyc09g009080.4' => 'sly', 'Solyc10g083630.2' => 'sly', 'Solyc11g007580.3' => 'sly', 'Sopen03g041220' => 'spe', 'Sopen04g017990' => 'spe', 'Sopen04g024670' => 'spe', 'Sopen09g003780' => 'spe', 'Sopen10g033100' => 'spe', 'Sopen11g003420' => 'spe', 'Sp4g18800' => 'spa', 'Sp6g38200' => 'spa', 'Sp7g31790' => 'spa', 'TAR369G0069' => 'tar', 'TAR374G1051' => 'tar', 'TAR374G1072' => 'tar', 'TAR374G1252' => 'tar', 'TAR623G1502' => 'tar', 'TAR633G1723' => 'tar', 'THA.LOC104800557' => 'tha', 'THA.LOC104816454' => 'tha', 'THA.LOC104816669' => 'tha', 'THA.LOC104816670' => 'tha', 'THA.LOC104827483' => 'tha', 'Thecc.01G161900' => 'tca', 'Thecc.05G080600' => 'tca', 'Thecc.09G291800' => 'tca', 'Thecc.10G101300' => 'tca', 'Thhalv10012472m.g' => 'esa', 'Thhalv10016139m.g' => 'esa', 'Thhalv10019961m.g' => 'esa', 'Thhalv10026936m.g' => 'esa', 'TPR.G10256' => 'tpr', 'TPR.G2504' => 'tpr', 'TPR.G32369' => 'tpr', 'TPR.G34611' => 'tpr', 'TPR.G5703' => 'tpr', 'TWI38G0218' => 'twi', 'TWI38G1634' => 'twi', 'TWI53G2113' => 'twi', 'TWI63G1581' => 'twi', 'TWI75G0699' => 'twi', 'TWI77G0704' => 'twi', 'TWI79G1587' => 'twi', 'unitig_27.g25399' => 'ugi', 'unitig_37.g12333' => 'ugi', 'vmacro07222' => 'vma', 'vmacro07365' => 'vma', 'vmacro08815' => 'vma', 'vmacro09352' => 'vma', 'VMungo0720G0212' => 'vmu', 'VMungo0720G0845' => 'vmu', 'VMungo1215G0844' => 'vmu', 'VMungo1383G2283' => 'vmu', 'Zm00001eb080650' => 'zma', 'Zm00001eb202980' => 'zma', 'Zm00001eb241240' => 'zma', 'Zm00001eb241310' => 'zma', 'Zm00001eb289030' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001201', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001201' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001201', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '520', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001201' ) ), 'genes' => array( 'A01p04360' => 'bna', 'A04p07990' => 'bna', 'A05p09310' => 'bna', 'A10p31520' => 'bna', 'Aa31csc22G50' => 'aar', 'Aa31csc22G60' => 'aar', 'Aa31csc22G70' => 'aar', 'Aa31csc22G80' => 'aar', 'Aa31LG11G5440' => 'aar', 'Aa31LG11G5450' => 'aar', 'Aa31LG2G16490' => 'aar', 'Aa31LG3G2540' => 'aar', 'Aa31LG5G21680' => 'aar', 'Aa31LG7G15440' => 'aar', 'Aa31LG7G15450' => 'aar', 'Aa31LG9G4630' => 'aar', 'Aa31LG9G4640' => 'aar', 'Aa31sc52G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3177' => 'aag', 'Actinidia06708' => 'ach', 'Actinidia18573' => 'ach', 'Actinidia18574' => 'ach', 'Actinidia28919' => 'ach', 'Actinidia31292' => 'ach', 'Actinidia31293' => 'ach', 'Actinidia31294' => 'ach', 'Actinidia33950' => 'ach', 'Actinidia34586' => 'ach', 'Actinidia34587' => 'ach', 'Ah.08g210980' => 'amhyb', 'Ah.16g107470' => 'amhyb', 'AL3G21300' => 'aly', 'AL4G32670' => 'aly', 'AL4G32680' => 'aly', 'AL6G14210' => 'aly', 'AL7G17320' => 'aly', 'Aqoxy1G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.66FLD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM3VD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUT3DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS0SHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8W5NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N246S2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R549UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBWK9U' => 'arhy', 'AT2G36490' => 'ath', 'AT3G10010' => 'ath', 'AT4G04957' => 'ath', 'AT4G34060' => 'ath', 'AT5G04560' => 'ath', 'ATR0820G039' => 'atr', 'ATR1149G052' => 'atr', 'Atru.chr12.965' => 'acertr', 'Atru.chr3.3382' => 'acertr', 'Atru.chr6.394' => 'acertr', 'Atru.chr8.1639' => 'acertr', 'AUR62002762' => 'cqu', 'AUR62004786' => 'cqu', 'AUR62023938' => 'cqu', 'AUR62028009' => 'cqu', 'AUR62028010' => 'cqu', 'AUR62033581' => 'cqu', 'AUR62037477' => 'cqu', 'AUR62038303' => 'cqu', 'AUR62041417' => 'cqu', 'BcaB02g09350' => 'bca', 'BcaB08g35661' => 'bca', 'BcaC01g01492' => 'bca', 'BcaC02g11765' => 'bca', 'BcaC06g32166' => 'bca', 'BcaNung03789' => 'bca', 'BcaNung06824' => 'bca', 'BcaNung07061' => 'bca', 'BolC1t00460H' => 'bol', 'BolC4t22808H' => 'bol', 'BolC9t59965H' => 'bol', 'BraA01t00425Z' => 'bra', 'BraA04t16488Z' => 'bra', 'BraA05t19888Z' => 'bra', 'BraA10t45198Z' => 'bra', 'C01p04760' => 'bna', 'C04p11600' => 'bna', 'C09p72210' => 'bna', 'CAN.G1138.12' => 'can', 'CAN.G135.68' => 'can', 'CAN.G282.14' => 'can', 'CAN.G344.2' => 'can', 'CAN.G668.49' => 'can', 'CAN.G824.26' => 'can', 'CAN.G824.27' => 'can', 'CANSAT25G0803' => 'cansat', 'CANSAT54G2606' => 'cansat', 'CANSAT56G1981' => 'cansat', 'CANSAT80G1516' => 'cansat', 'CARHR068350' => 'chi', 'CARHR084510' => 'chi', 'CARHR130800' => 'chi', 'CARHR133860' => 'chi', 'CARHR208710' => 'chi', 'CARHR259200' => 'chi', 'CARHR286790' => 'chi', 'CARHR286800' => 'chi', 'Carub.0003s0911' => 'cru', 'Carub.0004s1830' => 'cru', 'Carub.0004s1831' => 'cru', 'Carub.0006s0350' => 'cru', 'Carub.0007s0634' => 'cru', 'Ca_01678_v3' => 'car', 'Ca_10493_v3' => 'car', 'Ca_11125_v3' => 'car', 'Ca_11623_v3' => 'car', 'Ca_20517_v3' => 'car', 'Cc02_g10250' => 'ccan', 'Cc06_g05230' => 'ccan', 'CDE02G2714' => 'cde', 'CDE03G0091' => 'cde', 'CDE03G0262' => 'cde', 'CDE03G0461' => 'cde', 'CDE04G2541' => 'cde', 'CDE04G3083' => 'cde', 'CDE04G3509' => 'cde', 'CDE09G0105' => 'cde', 'Cfa010084' => 'cfa', 'Cfa011221' => 'cfa', 'Ciclev10010892m.g' => 'ccl', 'Ciclev10027676m.g' => 'ccl', 'Ciclev10030474m.g' => 'ccl', 'CiPaw.09G008500' => 'cil', 'CiPaw.13G036100' => 'cil', 'CiPaw.14G028400' => 'cil', 'ClCG02G021910' => 'cla', 'ClCG04G009770' => 'cla', 'ClCG05G021570' => 'cla', 'ClCG10G019400' => 'cla', 'COL.COLO4_27244' => 'col', 'COL.COLO4_28083' => 'col', 'COL.COLO4_29819' => 'col', 'COL.COLO4_30817' => 'col', 'Cpa.g.sc128.52' => 'cpa', 'Cpa.g.sc5.80' => 'cpa', 'Cpa.g.sc5.81' => 'cpa', 'Cpa.g.sc5.83' => 'cpa', 'Cre07.g355466' => 'cre', 'CsaV3_3G036780' => 'csa', 'CsaV3_5G035660' => 'csa', 'CsaV3_6G014730' => 'csa', 'CsaV3_6G040410' => 'csa', 'CSS0002130' => 'camsi', 'CSS0012668' => 'camsi', 'CSS0014168' => 'camsi', 'CSS0047502' => 'camsi', 'DCAR_000566' => 'dca', 'DCAR_004685' => 'dca', 'DCAR_006374' => 'dca', 'DCAR_013953' => 'dca', 'DCAR_014734' => 'dca', 'DCAR_017626' => 'dca', 'DCAR_023271' => 'dca', 'DCAR_023273' => 'dca', 'DCAR_029993' => 'dca', 'Dinv03195' => 'din', 'Dinv19826' => 'din', 'Dinv20843' => 'din', 'Dinv21259' => 'din', 'Dinv21260' => 'din', 'Dinv23941' => 'din', 'Dinv29423' => 'din', 'Dinv30660' => 'din', 'Duzib093G0950' => 'dzi', 'Duzib114G0475' => 'dzi', 'Duzib168G1001' => 'dzi', 'ECA232G0849' => 'eca', 'ECA233G0191' => 'eca', 'ECA236G3687' => 'eca', 'ECA238G1134' => 'eca', 'ECA238G4359' => 'eca', 'ECA240G1852' => 'eca', 'EL10Ac4g08943' => 'bvu', 'EL10Ac5g11585' => 'bvu', 'EL10Ac5g12151' => 'bvu', 'EL10Ac7g16995' => 'bvu', 'EL10Ac9g21080' => 'bvu', 'Eucgr.A01547' => 'egr', 'Eucgr.J00426' => 'egr', 'Eucgr.J01016' => 'egr', 'FAN02G1301' => 'fan', 'FAN02G3204' => 'fan', 'FAN04G1023' => 'fan', 'FAN05G1662' => 'fan', 'FAN05G3005' => 'fan', 'FAN05G3013' => 'fan', 'FAN05G4586' => 'fan', 'FAN08G3428' => 'fan', 'FAN09G1539' => 'fan', 'FAN09G4664' => 'fan', 'FAN11G1782' => 'fan', 'FAN14G0799' => 'fan', 'FAN14G4458' => 'fan', 'FAN15G3379' => 'fan', 'FAN16G0828' => 'fan', 'FAN18G0408' => 'fan', 'FAN20G2479' => 'fan', 'FAN21G3547' => 'fan', 'FAN24G3154' => 'fan', 'FAN27G1454' => 'fan', 'FAN27G2238' => 'fan', 'FvH4_2g10170' => 'fve', 'FvH4_3g04410' => 'fve', 'FvH4_5g29900' => 'fve', 'FvH4_6g07060' => 'fve', 'FvH4_6g17860' => 'fve', 'Glyma.03G190800' => 'gma', 'Glyma.10G065900' => 'gma', 'Glyma.10G202150' => 'gma', 'Glyma.13G151000' => 'gma', 'Glyma.20G188300' => 'gma', 'Gohir.A01G129700' => 'ghi', 'Gohir.A04G066400' => 'ghi', 'Gohir.A05G083800' => 'ghi', 'Gohir.A09G136700' => 'ghi', 'Gohir.D01G119000' => 'ghi', 'Gohir.D04G104500' => 'ghi', 'Gohir.D05G086701' => 'ghi', 'Gohir.D09G137800' => 'ghi', 'Gorai.002G145100' => 'gra', 'Gorai.006G158300' => 'gra', 'Gorai.009G088400' => 'gra', 'Gorai.009G408300' => 'gra', 'GSVIVG01031400001' => 'vvi', 'GSVIVG01033777001' => 'vvi', 'GSVIVG01034713001' => 'vvi', 'HanXRQChr01g0018671' => 'han', 'HanXRQChr04g0108701' => 'han', 'HanXRQChr07g0202991' => 'han', 'HanXRQChr11g0334091' => 'han', 'HanXRQChr13g0400001' => 'han', 'HanXRQChr14g0432601' => 'han', 'HanXRQChr14g0456351' => 'han', 'HanXRQChr16g0498811' => 'han', 'Haze_02614' => 'cav', 'Haze_19533' => 'cav', 'Haze_23450' => 'cav', 'Hma1.2p1_0567F.1_g180040' => 'hma', 'Hma1.2p1_0725F.1_g208850' => 'hma', 'Hma1.2p1_0927F.1_g237650' => 'hma', 'HPP92_005760' => 'vpl', 'HPP92_005761' => 'vpl', 'HPP92_009314' => 'vpl', 'HPP92_009315' => 'vpl', 'HPP92_016165' => 'vpl', 'HPP92_016166' => 'vpl', 'HPP92_016167' => 'vpl', 'HPP92_026209' => 'vpl', 'HPP92_026210' => 'vpl', 'HPP92_026211' => 'vpl', 'Hund04064' => 'sun', 'Hund07689' => 'sun', 'Lalb_Chr01g0018331' => 'lal', 'Lalb_Chr02g0151321' => 'lal', 'Lalb_Chr02g0151331' => 'lal', 'Lalb_Chr02g0151341' => 'lal', 'Lalb_Chr02g0151351' => 'lal', 'Lalb_Chr19g0128911' => 'lal', 'Lalb_Chr19g0128921' => 'lal', 'Lalb_Chr19g0128931' => 'lal', 'Lalb_Chr21g0315671' => 'lal', 'Lj1A221T46' => 'lonja', 'Lj1g0027290' => 'lja', 'Lj2A129T52' => 'lonja', 'Lj3A1003T41' => 'lonja', 'Lj3A932G50' => 'lonja', 'Lj3g0024881' => 'lja', 'Lj5g0002552' => 'lja', 'Lj5g0003988' => 'lja', 'Lj5g0006180' => 'lja', 'Lj5g0026634' => 'lja', 'Lsat_1_v5_gn_0_17001' => 'lsa', 'Lsat_1_v5_gn_2_102681' => 'lsa', 'Lsat_1_v5_gn_2_21401' => 'lsa', 'Lsat_1_v5_gn_2_23100' => 'lsa', 'Lsat_1_v5_gn_3_76420' => 'lsa', 'Lsat_1_v5_gn_4_110941' => 'lsa', 'Lsat_1_v5_gn_4_121940' => 'lsa', 'Lsat_1_v5_gn_5_106621' => 'lsa', 'Lsat_1_v5_gn_6_21180' => 'lsa', 'Lsat_1_v5_gn_6_27040' => 'lsa', 'Lsat_1_v5_gn_6_57640' => 'lsa', 'Lsat_1_v5_gn_6_57660' => 'lsa', 'Lsat_1_v5_gn_6_95000' => 'lsa', 'Lsat_1_v5_gn_7_68960' => 'lsa', 'Lsat_1_v5_gn_9_45340' => 'lsa', 'Lsat_1_v5_gn_9_79861' => 'lsa', 'Manes.04G008900' => 'mes', 'Manes.07G091800' => 'mes', 'Manes.08G020500' => 'mes', 'Manes.09G060800' => 'mes', 'Manes.10G055200' => 'mes', 'Manes.17G117800' => 'mes', 'Mapoly0005s0045' => 'mpo', 'Mapoly0018s0032' => 'mpo', 'MCO11G457' => 'mco', 'MD02G1245300' => 'mdo', 'MD02G1245400' => 'mdo', 'MD05G1004100' => 'mdo', 'MD07G1071800' => 'mdo', 'MD09G1259000' => 'mdo', 'MD09G1259100' => 'mdo', 'MD11G1157400' => 'mdo', 'MD12G1017600' => 'mdo', 'MD14G1015300' => 'mdo', 'MD17G1253500' => 'mdo', 'MD17G1253600' => 'mdo', 'Medtr1g061220' => 'mtr', 'Medtr1g492760' => 'mtr', 'Medtr2g008920' => 'mtr', 'Medtr2g008930' => 'mtr', 'Medtr2g075880' => 'mtr', 'Medtr2g075885' => 'mtr', 'Medtr2g075890' => 'mtr', 'Medtr2g084845' => 'mtr', 'Medtr2g099840' => 'mtr', 'Medtr2g099850' => 'mtr', 'Medtr2g099900' => 'mtr', 'Medtr5g095880' => 'mtr', 'Medtr6g088520' => 'mtr', 'Medtr6g088650' => 'mtr', 'Medtr7g005880' => 'mtr', 'Medtr7g103680' => 'mtr', 'MELO3C009432.2' => 'cme', 'MELO3C012368.2' => 'cme', 'MELO3C021451.2' => 'cme', 'MELO3C024516.2' => 'cme', 'Migut.D02337' => 'egut', 'Migut.F00888' => 'egut', 'Migut.J00987' => 'egut', 'Migut.L00220' => 'egut', 'Migut.L00221' => 'egut', 'Migut.L00609' => 'egut', 'MSTRG.19228' => 'ama', 'MSTRG.21064' => 'ama', 'MSTRG.9109' => 'ama', 'Nitab4.5_0000132g0200' => 'nta', 'Nitab4.5_0000233g0200' => 'nta', 'Nitab4.5_0001807g0090' => 'nta', 'Nitab4.5_0001922g0010' => 'nta', 'Nitab4.5_0002259g0070' => 'nta', 'Nitab4.5_0003987g0020' => 'nta', 'Nitab4.5_0005311g0020' => 'nta', 'Nitab4.5_0005460g0030' => 'nta', 'Nitab4.5_0006360g0050' => 'nta', 'Nitab4.5_0009829g0020' => 'nta', 'Nitab4.5_0010583g0010' => 'nta', 'Nn1g00052' => 'nnu', 'Nn1g05905' => 'nnu', 'Nn1g09481' => 'nnu', 'Nn2g13995' => 'nnu', 'Nn6g33515' => 'nnu', 'Oeu026559.4' => 'oeu', 'Oeu027978.3' => 'oeu', 'Oeu032421.3' => 'oeu', 'Oeu037536.1' => 'oeu', 'Oeu040537.2' => 'oeu', 'Oeu040540.1' => 'oeu', 'Oeu050180.1' => 'oeu', 'Oeu059852.1' => 'oeu', 'Os01g0218032' => 'osa', 'Os02g0494700' => 'osa', 'Os02g0496500' => 'osa', 'Os05g0445900' => 'osa', 'Os05g0446550' => 'osa', 'Os05g0446600' => 'osa', 'Peaxi162Scf00012g01927' => 'pax', 'Peaxi162Scf00017g00412' => 'pax', 'Peaxi162Scf00038g02141' => 'pax', 'Peaxi162Scf00110g01921' => 'pax', 'Peaxi162Scf00244g00044' => 'pax', 'Peaxi162Scf00433g00067' => 'pax', 'PGR004G0133' => 'pgr', 'PGR044G1748' => 'pgr', 'PGR119G1632' => 'pgr', 'PGSC0003DMG400002719' => 'stu', 'PGSC0003DMG400009172' => 'stu', 'PGSC0003DMG400028264' => 'stu', 'PGSC0003DMG400038824' => 'stu', 'Phvul.001G186500' => 'pvu', 'Phvul.003G032300' => 'pvu', 'Phvul.007G223600' => 'pvu', 'Potri.001G150001' => 'ptr', 'Potri.006G116000' => 'ptr', 'Potri.008G025900' => 'ptr', 'Potri.010G234400' => 'ptr', 'Pp3c2_260' => 'ppa', 'Pp3c4_2820' => 'ppa', 'Pp3c6_18380' => 'ppa', 'Prupe.2G089400' => 'ppe', 'Prupe.3G291400' => 'ppe', 'Prupe.6G119100' => 'ppe', 'Prupe.7G005000' => 'ppe', 'Prupe.7G118000' => 'ppe', 'Psat0s3291g0200' => 'psa', 'Psat0s5991g0040' => 'psa', 'Psat3g035920' => 'psa', 'Psat3g051720' => 'psa', 'Psat4g061600' => 'psa', 'Psat5g004440' => 'psa', 'Psat5g021240' => 'psa', 'Psat5g254920' => 'psa', 'Psat6g079040' => 'psa', 'Psat6g177080' => 'psa', 'PSO063G2265' => 'pso', 'PSO339G3200' => 'pso', 'PSO339G5206' => 'pso', 'PSO384G4302' => 'pso', 'QL03p004227' => 'qlo', 'QL04p041091' => 'qlo', 'QL07p040602' => 'qlo', 'QL08p011555' => 'qlo', 'RcHm_v2.0_Chr3g0456601' => 'rch', 'RcHm_v2.0_Chr3g0456611' => 'rch', 'RcHm_v2.0_Chr3g0472091' => 'rch', 'RcHm_v2.0_Chr6g0267351' => 'rch', 'RcHm_v2.0_Chr6g0267361' => 'rch', 'RcHm_v2.0_Chr6g0267411' => 'rch', 'Rhsim02G0128300' => 'rsi', 'Rhsim02G0166200' => 'rsi', 'Rhsim03G0081500' => 'rsi', 'Rhsim03G0106400' => 'rsi', 'Rhsim04G0135900' => 'rsi', 'Rhsim07G0188900' => 'rsi', 'Rhsim13G0105000' => 'rsi', 'Sabra06G0090700' => 'sbr', 'Sabra08G0017600' => 'sbr', 'Sabra10G0181700' => 'sbr', 'SalBow3G3680' => 'sbo', 'SalBow5G0882' => 'sbo', 'SalBow6G6340' => 'sbo', 'Sc02g0001140' => 'sci', 'Sc06g0008920' => 'sci', 'Sc09g0005580' => 'sci', 'Sc20g0006010' => 'sci', 'Sed0001020' => 'sed', 'Sed0011723' => 'sed', 'Sed0020277' => 'sed', 'Sed0022197' => 'sed', 'Sed0026916' => 'sed', 'SEGI_00076' => 'sgi', 'SEGI_01508' => 'sgi', 'SEGI_15422' => 'sgi', 'SGA_v2.0_scaffold11G05541' => 'sas', 'SGA_v2.0_scaffold193G40703' => 'sas', 'SGA_v2.0_scaffold259G45831' => 'sas', 'SGA_v2.0_scaffold40G15408' => 'sas', 'SGA_v2.0_scaffold57G20202' => 'sas', 'SMO301G0038' => 'smo', 'Solyc03g123440.3' => 'sly', 'Solyc04g047780.1' => 'sly', 'Solyc04g047810.1' => 'sly', 'Solyc04g047820.1' => 'sly', 'Solyc04g047830.1' => 'sly', 'Solyc04g054860.1' => 'sly', 'Solyc04g054870.1' => 'sly', 'Solyc04g054875.1' => 'sly', 'Solyc09g009080.4' => 'sly', 'Solyc10g083630.2' => 'sly', 'Solyc11g007580.3' => 'sly', 'Sopen03g041220' => 'spe', 'Sopen04g017990' => 'spe', 'Sopen04g024670' => 'spe', 'Sopen09g003780' => 'spe', 'Sopen10g033100' => 'spe', 'Sopen11g003420' => 'spe', 'Sp4g18800' => 'spa', 'Sp6g38200' => 'spa', 'Sp7g31790' => 'spa', 'TAR369G0069' => 'tar', 'TAR374G1051' => 'tar', 'TAR374G1072' => 'tar', 'TAR374G1252' => 'tar', 'TAR623G1502' => 'tar', 'TAR633G1723' => 'tar', 'THA.LOC104800557' => 'tha', 'THA.LOC104816454' => 'tha', 'THA.LOC104816669' => 'tha', 'THA.LOC104816670' => 'tha', 'THA.LOC104827483' => 'tha', 'Thecc.01G161900' => 'tca', 'Thecc.05G080600' => 'tca', 'Thecc.09G291800' => 'tca', 'Thecc.10G101300' => 'tca', 'Thhalv10012472m.g' => 'esa', 'Thhalv10016139m.g' => 'esa', 'Thhalv10019961m.g' => 'esa', 'Thhalv10026936m.g' => 'esa', 'TPR.G10256' => 'tpr', 'TPR.G2504' => 'tpr', 'TPR.G32369' => 'tpr', 'TPR.G34611' => 'tpr', 'TPR.G5703' => 'tpr', 'TWI38G0218' => 'twi', 'TWI38G1634' => 'twi', 'TWI53G2113' => 'twi', 'TWI63G1581' => 'twi', 'TWI75G0699' => 'twi', 'TWI77G0704' => 'twi', 'TWI79G1587' => 'twi', 'unitig_27.g25399' => 'ugi', 'unitig_37.g12333' => 'ugi', 'vmacro07222' => 'vma', 'vmacro07365' => 'vma', 'vmacro08815' => 'vma', 'vmacro09352' => 'vma', 'VMungo0720G0212' => 'vmu', 'VMungo0720G0845' => 'vmu', 'VMungo1215G0844' => 'vmu', 'VMungo1383G2283' => 'vmu', 'Zm00001eb080650' => 'zma', 'Zm00001eb202980' => 'zma', 'Zm00001eb241240' => 'zma', 'Zm00001eb241310' => 'zma', 'Zm00001eb289030' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001201' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001201' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001201' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001201' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001201', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '520', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p04360' => 'bna', 'A04p07990' => 'bna', 'A05p09310' => 'bna', 'A10p31520' => 'bna', 'Aa31csc22G50' => 'aar', 'Aa31csc22G60' => 'aar', 'Aa31csc22G70' => 'aar', 'Aa31csc22G80' => 'aar', 'Aa31LG11G5440' => 'aar', 'Aa31LG11G5450' => 'aar', 'Aa31LG2G16490' => 'aar', 'Aa31LG3G2540' => 'aar', 'Aa31LG5G21680' => 'aar', 'Aa31LG7G15440' => 'aar', 'Aa31LG7G15450' => 'aar', 'Aa31LG9G4630' => 'aar', 'Aa31LG9G4640' => 'aar', 'Aa31sc52G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3177' => 'aag', 'Actinidia06708' => 'ach', 'Actinidia18573' => 'ach', 'Actinidia18574' => 'ach', 'Actinidia28919' => 'ach', 'Actinidia31292' => 'ach', 'Actinidia31293' => 'ach', 'Actinidia31294' => 'ach', 'Actinidia33950' => 'ach', 'Actinidia34586' => 'ach', 'Actinidia34587' => 'ach', 'Ah.08g210980' => 'amhyb', 'Ah.16g107470' => 'amhyb', 'AL3G21300' => 'aly', 'AL4G32670' => 'aly', 'AL4G32680' => 'aly', 'AL6G14210' => 'aly', 'AL7G17320' => 'aly', 'Aqoxy1G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.66FLD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM3VD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUT3DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS0SHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8W5NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N246S2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R549UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBWK9U' => 'arhy', 'AT2G36490' => 'ath', 'AT3G10010' => 'ath', 'AT4G04957' => 'ath', 'AT4G34060' => 'ath', 'AT5G04560' => 'ath', 'ATR0820G039' => 'atr', 'ATR1149G052' => 'atr', 'Atru.chr12.965' => 'acertr', 'Atru.chr3.3382' => 'acertr', 'Atru.chr6.394' => 'acertr', 'Atru.chr8.1639' => 'acertr', 'AUR62002762' => 'cqu', 'AUR62004786' => 'cqu', 'AUR62023938' => 'cqu', 'AUR62028009' => 'cqu', 'AUR62028010' => 'cqu', 'AUR62033581' => 'cqu', 'AUR62037477' => 'cqu', 'AUR62038303' => 'cqu', 'AUR62041417' => 'cqu', 'BcaB02g09350' => 'bca', 'BcaB08g35661' => 'bca', 'BcaC01g01492' => 'bca', 'BcaC02g11765' => 'bca', 'BcaC06g32166' => 'bca', 'BcaNung03789' => 'bca', 'BcaNung06824' => 'bca', 'BcaNung07061' => 'bca', 'BolC1t00460H' => 'bol', 'BolC4t22808H' => 'bol', 'BolC9t59965H' => 'bol', 'BraA01t00425Z' => 'bra', 'BraA04t16488Z' => 'bra', 'BraA05t19888Z' => 'bra', 'BraA10t45198Z' => 'bra', 'C01p04760' => 'bna', 'C04p11600' => 'bna', 'C09p72210' => 'bna', 'CAN.G1138.12' => 'can', 'CAN.G135.68' => 'can', 'CAN.G282.14' => 'can', 'CAN.G344.2' => 'can', 'CAN.G668.49' => 'can', 'CAN.G824.26' => 'can', 'CAN.G824.27' => 'can', 'CANSAT25G0803' => 'cansat', 'CANSAT54G2606' => 'cansat', 'CANSAT56G1981' => 'cansat', 'CANSAT80G1516' => 'cansat', 'CARHR068350' => 'chi', 'CARHR084510' => 'chi', 'CARHR130800' => 'chi', 'CARHR133860' => 'chi', 'CARHR208710' => 'chi', 'CARHR259200' => 'chi', 'CARHR286790' => 'chi', 'CARHR286800' => 'chi', 'Carub.0003s0911' => 'cru', 'Carub.0004s1830' => 'cru', 'Carub.0004s1831' => 'cru', 'Carub.0006s0350' => 'cru', 'Carub.0007s0634' => 'cru', 'Ca_01678_v3' => 'car', 'Ca_10493_v3' => 'car', 'Ca_11125_v3' => 'car', 'Ca_11623_v3' => 'car', 'Ca_20517_v3' => 'car', 'Cc02_g10250' => 'ccan', 'Cc06_g05230' => 'ccan', 'CDE02G2714' => 'cde', 'CDE03G0091' => 'cde', 'CDE03G0262' => 'cde', 'CDE03G0461' => 'cde', 'CDE04G2541' => 'cde', 'CDE04G3083' => 'cde', 'CDE04G3509' => 'cde', 'CDE09G0105' => 'cde', 'Cfa010084' => 'cfa', 'Cfa011221' => 'cfa', 'Ciclev10010892m.g' => 'ccl', 'Ciclev10027676m.g' => 'ccl', 'Ciclev10030474m.g' => 'ccl', 'CiPaw.09G008500' => 'cil', 'CiPaw.13G036100' => 'cil', 'CiPaw.14G028400' => 'cil', 'ClCG02G021910' => 'cla', 'ClCG04G009770' => 'cla', 'ClCG05G021570' => 'cla', 'ClCG10G019400' => 'cla', 'COL.COLO4_27244' => 'col', 'COL.COLO4_28083' => 'col', 'COL.COLO4_29819' => 'col', 'COL.COLO4_30817' => 'col', 'Cpa.g.sc128.52' => 'cpa', 'Cpa.g.sc5.80' => 'cpa', 'Cpa.g.sc5.81' => 'cpa', 'Cpa.g.sc5.83' => 'cpa', 'Cre07.g355466' => 'cre', 'CsaV3_3G036780' => 'csa', 'CsaV3_5G035660' => 'csa', 'CsaV3_6G014730' => 'csa', 'CsaV3_6G040410' => 'csa', 'CSS0002130' => 'camsi', 'CSS0012668' => 'camsi', 'CSS0014168' => 'camsi', 'CSS0047502' => 'camsi', 'DCAR_000566' => 'dca', 'DCAR_004685' => 'dca', 'DCAR_006374' => 'dca', 'DCAR_013953' => 'dca', 'DCAR_014734' => 'dca', 'DCAR_017626' => 'dca', 'DCAR_023271' => 'dca', 'DCAR_023273' => 'dca', 'DCAR_029993' => 'dca', 'Dinv03195' => 'din', 'Dinv19826' => 'din', 'Dinv20843' => 'din', 'Dinv21259' => 'din', 'Dinv21260' => 'din', 'Dinv23941' => 'din', 'Dinv29423' => 'din', 'Dinv30660' => 'din', 'Duzib093G0950' => 'dzi', 'Duzib114G0475' => 'dzi', 'Duzib168G1001' => 'dzi', 'ECA232G0849' => 'eca', 'ECA233G0191' => 'eca', 'ECA236G3687' => 'eca', 'ECA238G1134' => 'eca', 'ECA238G4359' => 'eca', 'ECA240G1852' => 'eca', 'EL10Ac4g08943' => 'bvu', 'EL10Ac5g11585' => 'bvu', 'EL10Ac5g12151' => 'bvu', 'EL10Ac7g16995' => 'bvu', 'EL10Ac9g21080' => 'bvu', 'Eucgr.A01547' => 'egr', 'Eucgr.J00426' => 'egr', 'Eucgr.J01016' => 'egr', 'FAN02G1301' => 'fan', 'FAN02G3204' => 'fan', 'FAN04G1023' => 'fan', 'FAN05G1662' => 'fan', 'FAN05G3005' => 'fan', 'FAN05G3013' => 'fan', 'FAN05G4586' => 'fan', 'FAN08G3428' => 'fan', 'FAN09G1539' => 'fan', 'FAN09G4664' => 'fan', 'FAN11G1782' => 'fan', 'FAN14G0799' => 'fan', 'FAN14G4458' => 'fan', 'FAN15G3379' => 'fan', 'FAN16G0828' => 'fan', 'FAN18G0408' => 'fan', 'FAN20G2479' => 'fan', 'FAN21G3547' => 'fan', 'FAN24G3154' => 'fan', 'FAN27G1454' => 'fan', 'FAN27G2238' => 'fan', 'FvH4_2g10170' => 'fve', 'FvH4_3g04410' => 'fve', 'FvH4_5g29900' => 'fve', 'FvH4_6g07060' => 'fve', 'FvH4_6g17860' => 'fve', 'Glyma.03G190800' => 'gma', 'Glyma.10G065900' => 'gma', 'Glyma.10G202150' => 'gma', 'Glyma.13G151000' => 'gma', 'Glyma.20G188300' => 'gma', 'Gohir.A01G129700' => 'ghi', 'Gohir.A04G066400' => 'ghi', 'Gohir.A05G083800' => 'ghi', 'Gohir.A09G136700' => 'ghi', 'Gohir.D01G119000' => 'ghi', 'Gohir.D04G104500' => 'ghi', 'Gohir.D05G086701' => 'ghi', 'Gohir.D09G137800' => 'ghi', 'Gorai.002G145100' => 'gra', 'Gorai.006G158300' => 'gra', 'Gorai.009G088400' => 'gra', 'Gorai.009G408300' => 'gra', 'GSVIVG01031400001' => 'vvi', 'GSVIVG01033777001' => 'vvi', 'GSVIVG01034713001' => 'vvi', 'HanXRQChr01g0018671' => 'han', 'HanXRQChr04g0108701' => 'han', 'HanXRQChr07g0202991' => 'han', 'HanXRQChr11g0334091' => 'han', 'HanXRQChr13g0400001' => 'han', 'HanXRQChr14g0432601' => 'han', 'HanXRQChr14g0456351' => 'han', 'HanXRQChr16g0498811' => 'han', 'Haze_02614' => 'cav', 'Haze_19533' => 'cav', 'Haze_23450' => 'cav', 'Hma1.2p1_0567F.1_g180040' => 'hma', 'Hma1.2p1_0725F.1_g208850' => 'hma', 'Hma1.2p1_0927F.1_g237650' => 'hma', 'HPP92_005760' => 'vpl', 'HPP92_005761' => 'vpl', 'HPP92_009314' => 'vpl', 'HPP92_009315' => 'vpl', 'HPP92_016165' => 'vpl', 'HPP92_016166' => 'vpl', 'HPP92_016167' => 'vpl', 'HPP92_026209' => 'vpl', 'HPP92_026210' => 'vpl', 'HPP92_026211' => 'vpl', 'Hund04064' => 'sun', 'Hund07689' => 'sun', 'Lalb_Chr01g0018331' => 'lal', 'Lalb_Chr02g0151321' => 'lal', 'Lalb_Chr02g0151331' => 'lal', 'Lalb_Chr02g0151341' => 'lal', 'Lalb_Chr02g0151351' => 'lal', 'Lalb_Chr19g0128911' => 'lal', 'Lalb_Chr19g0128921' => 'lal', 'Lalb_Chr19g0128931' => 'lal', 'Lalb_Chr21g0315671' => 'lal', 'Lj1A221T46' => 'lonja', 'Lj1g0027290' => 'lja', 'Lj2A129T52' => 'lonja', 'Lj3A1003T41' => 'lonja', 'Lj3A932G50' => 'lonja', 'Lj3g0024881' => 'lja', 'Lj5g0002552' => 'lja', 'Lj5g0003988' => 'lja', 'Lj5g0006180' => 'lja', 'Lj5g0026634' => 'lja', 'Lsat_1_v5_gn_0_17001' => 'lsa', 'Lsat_1_v5_gn_2_102681' => 'lsa', 'Lsat_1_v5_gn_2_21401' => 'lsa', 'Lsat_1_v5_gn_2_23100' => 'lsa', 'Lsat_1_v5_gn_3_76420' => 'lsa', 'Lsat_1_v5_gn_4_110941' => 'lsa', 'Lsat_1_v5_gn_4_121940' => 'lsa', 'Lsat_1_v5_gn_5_106621' => 'lsa', 'Lsat_1_v5_gn_6_21180' => 'lsa', 'Lsat_1_v5_gn_6_27040' => 'lsa', 'Lsat_1_v5_gn_6_57640' => 'lsa', 'Lsat_1_v5_gn_6_57660' => 'lsa', 'Lsat_1_v5_gn_6_95000' => 'lsa', 'Lsat_1_v5_gn_7_68960' => 'lsa', 'Lsat_1_v5_gn_9_45340' => 'lsa', 'Lsat_1_v5_gn_9_79861' => 'lsa', 'Manes.04G008900' => 'mes', 'Manes.07G091800' => 'mes', 'Manes.08G020500' => 'mes', 'Manes.09G060800' => 'mes', 'Manes.10G055200' => 'mes', 'Manes.17G117800' => 'mes', 'Mapoly0005s0045' => 'mpo', 'Mapoly0018s0032' => 'mpo', 'MCO11G457' => 'mco', 'MD02G1245300' => 'mdo', 'MD02G1245400' => 'mdo', 'MD05G1004100' => 'mdo', 'MD07G1071800' => 'mdo', 'MD09G1259000' => 'mdo', 'MD09G1259100' => 'mdo', 'MD11G1157400' => 'mdo', 'MD12G1017600' => 'mdo', 'MD14G1015300' => 'mdo', 'MD17G1253500' => 'mdo', 'MD17G1253600' => 'mdo', 'Medtr1g061220' => 'mtr', 'Medtr1g492760' => 'mtr', 'Medtr2g008920' => 'mtr', 'Medtr2g008930' => 'mtr', 'Medtr2g075880' => 'mtr', 'Medtr2g075885' => 'mtr', 'Medtr2g075890' => 'mtr', 'Medtr2g084845' => 'mtr', 'Medtr2g099840' => 'mtr', 'Medtr2g099850' => 'mtr', 'Medtr2g099900' => 'mtr', 'Medtr5g095880' => 'mtr', 'Medtr6g088520' => 'mtr', 'Medtr6g088650' => 'mtr', 'Medtr7g005880' => 'mtr', 'Medtr7g103680' => 'mtr', 'MELO3C009432.2' => 'cme', 'MELO3C012368.2' => 'cme', 'MELO3C021451.2' => 'cme', 'MELO3C024516.2' => 'cme', 'Migut.D02337' => 'egut', 'Migut.F00888' => 'egut', 'Migut.J00987' => 'egut', 'Migut.L00220' => 'egut', 'Migut.L00221' => 'egut', 'Migut.L00609' => 'egut', 'MSTRG.19228' => 'ama', 'MSTRG.21064' => 'ama', 'MSTRG.9109' => 'ama', 'Nitab4.5_0000132g0200' => 'nta', 'Nitab4.5_0000233g0200' => 'nta', 'Nitab4.5_0001807g0090' => 'nta', 'Nitab4.5_0001922g0010' => 'nta', 'Nitab4.5_0002259g0070' => 'nta', 'Nitab4.5_0003987g0020' => 'nta', 'Nitab4.5_0005311g0020' => 'nta', 'Nitab4.5_0005460g0030' => 'nta', 'Nitab4.5_0006360g0050' => 'nta', 'Nitab4.5_0009829g0020' => 'nta', 'Nitab4.5_0010583g0010' => 'nta', 'Nn1g00052' => 'nnu', 'Nn1g05905' => 'nnu', 'Nn1g09481' => 'nnu', 'Nn2g13995' => 'nnu', 'Nn6g33515' => 'nnu', 'Oeu026559.4' => 'oeu', 'Oeu027978.3' => 'oeu', 'Oeu032421.3' => 'oeu', 'Oeu037536.1' => 'oeu', 'Oeu040537.2' => 'oeu', 'Oeu040540.1' => 'oeu', 'Oeu050180.1' => 'oeu', 'Oeu059852.1' => 'oeu', 'Os01g0218032' => 'osa', 'Os02g0494700' => 'osa', 'Os02g0496500' => 'osa', 'Os05g0445900' => 'osa', 'Os05g0446550' => 'osa', 'Os05g0446600' => 'osa', 'Peaxi162Scf00012g01927' => 'pax', 'Peaxi162Scf00017g00412' => 'pax', 'Peaxi162Scf00038g02141' => 'pax', 'Peaxi162Scf00110g01921' => 'pax', 'Peaxi162Scf00244g00044' => 'pax', 'Peaxi162Scf00433g00067' => 'pax', 'PGR004G0133' => 'pgr', 'PGR044G1748' => 'pgr', 'PGR119G1632' => 'pgr', 'PGSC0003DMG400002719' => 'stu', 'PGSC0003DMG400009172' => 'stu', 'PGSC0003DMG400028264' => 'stu', 'PGSC0003DMG400038824' => 'stu', 'Phvul.001G186500' => 'pvu', 'Phvul.003G032300' => 'pvu', 'Phvul.007G223600' => 'pvu', 'Potri.001G150001' => 'ptr', 'Potri.006G116000' => 'ptr', 'Potri.008G025900' => 'ptr', 'Potri.010G234400' => 'ptr', 'Pp3c2_260' => 'ppa', 'Pp3c4_2820' => 'ppa', 'Pp3c6_18380' => 'ppa', 'Prupe.2G089400' => 'ppe', 'Prupe.3G291400' => 'ppe', 'Prupe.6G119100' => 'ppe', 'Prupe.7G005000' => 'ppe', 'Prupe.7G118000' => 'ppe', 'Psat0s3291g0200' => 'psa', 'Psat0s5991g0040' => 'psa', 'Psat3g035920' => 'psa', 'Psat3g051720' => 'psa', 'Psat4g061600' => 'psa', 'Psat5g004440' => 'psa', 'Psat5g021240' => 'psa', 'Psat5g254920' => 'psa', 'Psat6g079040' => 'psa', 'Psat6g177080' => 'psa', 'PSO063G2265' => 'pso', 'PSO339G3200' => 'pso', 'PSO339G5206' => 'pso', 'PSO384G4302' => 'pso', 'QL03p004227' => 'qlo', 'QL04p041091' => 'qlo', 'QL07p040602' => 'qlo', 'QL08p011555' => 'qlo', 'RcHm_v2.0_Chr3g0456601' => 'rch', 'RcHm_v2.0_Chr3g0456611' => 'rch', 'RcHm_v2.0_Chr3g0472091' => 'rch', 'RcHm_v2.0_Chr6g0267351' => 'rch', 'RcHm_v2.0_Chr6g0267361' => 'rch', 'RcHm_v2.0_Chr6g0267411' => 'rch', 'Rhsim02G0128300' => 'rsi', 'Rhsim02G0166200' => 'rsi', 'Rhsim03G0081500' => 'rsi', 'Rhsim03G0106400' => 'rsi', 'Rhsim04G0135900' => 'rsi', 'Rhsim07G0188900' => 'rsi', 'Rhsim13G0105000' => 'rsi', 'Sabra06G0090700' => 'sbr', 'Sabra08G0017600' => 'sbr', 'Sabra10G0181700' => 'sbr', 'SalBow3G3680' => 'sbo', 'SalBow5G0882' => 'sbo', 'SalBow6G6340' => 'sbo', 'Sc02g0001140' => 'sci', 'Sc06g0008920' => 'sci', 'Sc09g0005580' => 'sci', 'Sc20g0006010' => 'sci', 'Sed0001020' => 'sed', 'Sed0011723' => 'sed', 'Sed0020277' => 'sed', 'Sed0022197' => 'sed', 'Sed0026916' => 'sed', 'SEGI_00076' => 'sgi', 'SEGI_01508' => 'sgi', 'SEGI_15422' => 'sgi', 'SGA_v2.0_scaffold11G05541' => 'sas', 'SGA_v2.0_scaffold193G40703' => 'sas', 'SGA_v2.0_scaffold259G45831' => 'sas', 'SGA_v2.0_scaffold40G15408' => 'sas', 'SGA_v2.0_scaffold57G20202' => 'sas', 'SMO301G0038' => 'smo', 'Solyc03g123440.3' => 'sly', 'Solyc04g047780.1' => 'sly', 'Solyc04g047810.1' => 'sly', 'Solyc04g047820.1' => 'sly', 'Solyc04g047830.1' => 'sly', 'Solyc04g054860.1' => 'sly', 'Solyc04g054870.1' => 'sly', 'Solyc04g054875.1' => 'sly', 'Solyc09g009080.4' => 'sly', 'Solyc10g083630.2' => 'sly', 'Solyc11g007580.3' => 'sly', 'Sopen03g041220' => 'spe', 'Sopen04g017990' => 'spe', 'Sopen04g024670' => 'spe', 'Sopen09g003780' => 'spe', 'Sopen10g033100' => 'spe', 'Sopen11g003420' => 'spe', 'Sp4g18800' => 'spa', 'Sp6g38200' => 'spa', 'Sp7g31790' => 'spa', 'TAR369G0069' => 'tar', 'TAR374G1051' => 'tar', 'TAR374G1072' => 'tar', 'TAR374G1252' => 'tar', 'TAR623G1502' => 'tar', 'TAR633G1723' => 'tar', 'THA.LOC104800557' => 'tha', 'THA.LOC104816454' => 'tha', 'THA.LOC104816669' => 'tha', 'THA.LOC104816670' => 'tha', 'THA.LOC104827483' => 'tha', 'Thecc.01G161900' => 'tca', 'Thecc.05G080600' => 'tca', 'Thecc.09G291800' => 'tca', 'Thecc.10G101300' => 'tca', 'Thhalv10012472m.g' => 'esa', 'Thhalv10016139m.g' => 'esa', 'Thhalv10019961m.g' => 'esa', 'Thhalv10026936m.g' => 'esa', 'TPR.G10256' => 'tpr', 'TPR.G2504' => 'tpr', 'TPR.G32369' => 'tpr', 'TPR.G34611' => 'tpr', 'TPR.G5703' => 'tpr', 'TWI38G0218' => 'twi', 'TWI38G1634' => 'twi', 'TWI53G2113' => 'twi', 'TWI63G1581' => 'twi', 'TWI75G0699' => 'twi', 'TWI77G0704' => 'twi', 'TWI79G1587' => 'twi', 'unitig_27.g25399' => 'ugi', 'unitig_37.g12333' => 'ugi', 'vmacro07222' => 'vma', 'vmacro07365' => 'vma', 'vmacro08815' => 'vma', 'vmacro09352' => 'vma', 'VMungo0720G0212' => 'vmu', 'VMungo0720G0845' => 'vmu', 'VMungo1215G0844' => 'vmu', 'VMungo1383G2283' => 'vmu', 'Zm00001eb080650' => 'zma', 'Zm00001eb202980' => 'zma', 'Zm00001eb241240' => 'zma', 'Zm00001eb241310' => 'zma', 'Zm00001eb289030' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001201', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001201' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001201', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '520', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001201' ) ), 'genes' => array( 'A01p04360' => 'bna', 'A04p07990' => 'bna', 'A05p09310' => 'bna', 'A10p31520' => 'bna', 'Aa31csc22G50' => 'aar', 'Aa31csc22G60' => 'aar', 'Aa31csc22G70' => 'aar', 'Aa31csc22G80' => 'aar', 'Aa31LG11G5440' => 'aar', 'Aa31LG11G5450' => 'aar', 'Aa31LG2G16490' => 'aar', 'Aa31LG3G2540' => 'aar', 'Aa31LG5G21680' => 'aar', 'Aa31LG7G15440' => 'aar', 'Aa31LG7G15450' => 'aar', 'Aa31LG9G4630' => 'aar', 'Aa31LG9G4640' => 'aar', 'Aa31sc52G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3177' => 'aag', 'Actinidia06708' => 'ach', 'Actinidia18573' => 'ach', 'Actinidia18574' => 'ach', 'Actinidia28919' => 'ach', 'Actinidia31292' => 'ach', 'Actinidia31293' => 'ach', 'Actinidia31294' => 'ach', 'Actinidia33950' => 'ach', 'Actinidia34586' => 'ach', 'Actinidia34587' => 'ach', 'Ah.08g210980' => 'amhyb', 'Ah.16g107470' => 'amhyb', 'AL3G21300' => 'aly', 'AL4G32670' => 'aly', 'AL4G32680' => 'aly', 'AL6G14210' => 'aly', 'AL7G17320' => 'aly', 'Aqoxy1G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.66FLD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM3VD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUT3DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS0SHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8W5NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N246S2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R549UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBWK9U' => 'arhy', 'AT2G36490' => 'ath', 'AT3G10010' => 'ath', 'AT4G04957' => 'ath', 'AT4G34060' => 'ath', 'AT5G04560' => 'ath', 'ATR0820G039' => 'atr', 'ATR1149G052' => 'atr', 'Atru.chr12.965' => 'acertr', 'Atru.chr3.3382' => 'acertr', 'Atru.chr6.394' => 'acertr', 'Atru.chr8.1639' => 'acertr', 'AUR62002762' => 'cqu', 'AUR62004786' => 'cqu', 'AUR62023938' => 'cqu', 'AUR62028009' => 'cqu', 'AUR62028010' => 'cqu', 'AUR62033581' => 'cqu', 'AUR62037477' => 'cqu', 'AUR62038303' => 'cqu', 'AUR62041417' => 'cqu', 'BcaB02g09350' => 'bca', 'BcaB08g35661' => 'bca', 'BcaC01g01492' => 'bca', 'BcaC02g11765' => 'bca', 'BcaC06g32166' => 'bca', 'BcaNung03789' => 'bca', 'BcaNung06824' => 'bca', 'BcaNung07061' => 'bca', 'BolC1t00460H' => 'bol', 'BolC4t22808H' => 'bol', 'BolC9t59965H' => 'bol', 'BraA01t00425Z' => 'bra', 'BraA04t16488Z' => 'bra', 'BraA05t19888Z' => 'bra', 'BraA10t45198Z' => 'bra', 'C01p04760' => 'bna', 'C04p11600' => 'bna', 'C09p72210' => 'bna', 'CAN.G1138.12' => 'can', 'CAN.G135.68' => 'can', 'CAN.G282.14' => 'can', 'CAN.G344.2' => 'can', 'CAN.G668.49' => 'can', 'CAN.G824.26' => 'can', 'CAN.G824.27' => 'can', 'CANSAT25G0803' => 'cansat', 'CANSAT54G2606' => 'cansat', 'CANSAT56G1981' => 'cansat', 'CANSAT80G1516' => 'cansat', 'CARHR068350' => 'chi', 'CARHR084510' => 'chi', 'CARHR130800' => 'chi', 'CARHR133860' => 'chi', 'CARHR208710' => 'chi', 'CARHR259200' => 'chi', 'CARHR286790' => 'chi', 'CARHR286800' => 'chi', 'Carub.0003s0911' => 'cru', 'Carub.0004s1830' => 'cru', 'Carub.0004s1831' => 'cru', 'Carub.0006s0350' => 'cru', 'Carub.0007s0634' => 'cru', 'Ca_01678_v3' => 'car', 'Ca_10493_v3' => 'car', 'Ca_11125_v3' => 'car', 'Ca_11623_v3' => 'car', 'Ca_20517_v3' => 'car', 'Cc02_g10250' => 'ccan', 'Cc06_g05230' => 'ccan', 'CDE02G2714' => 'cde', 'CDE03G0091' => 'cde', 'CDE03G0262' => 'cde', 'CDE03G0461' => 'cde', 'CDE04G2541' => 'cde', 'CDE04G3083' => 'cde', 'CDE04G3509' => 'cde', 'CDE09G0105' => 'cde', 'Cfa010084' => 'cfa', 'Cfa011221' => 'cfa', 'Ciclev10010892m.g' => 'ccl', 'Ciclev10027676m.g' => 'ccl', 'Ciclev10030474m.g' => 'ccl', 'CiPaw.09G008500' => 'cil', 'CiPaw.13G036100' => 'cil', 'CiPaw.14G028400' => 'cil', 'ClCG02G021910' => 'cla', 'ClCG04G009770' => 'cla', 'ClCG05G021570' => 'cla', 'ClCG10G019400' => 'cla', 'COL.COLO4_27244' => 'col', 'COL.COLO4_28083' => 'col', 'COL.COLO4_29819' => 'col', 'COL.COLO4_30817' => 'col', 'Cpa.g.sc128.52' => 'cpa', 'Cpa.g.sc5.80' => 'cpa', 'Cpa.g.sc5.81' => 'cpa', 'Cpa.g.sc5.83' => 'cpa', 'Cre07.g355466' => 'cre', 'CsaV3_3G036780' => 'csa', 'CsaV3_5G035660' => 'csa', 'CsaV3_6G014730' => 'csa', 'CsaV3_6G040410' => 'csa', 'CSS0002130' => 'camsi', 'CSS0012668' => 'camsi', 'CSS0014168' => 'camsi', 'CSS0047502' => 'camsi', 'DCAR_000566' => 'dca', 'DCAR_004685' => 'dca', 'DCAR_006374' => 'dca', 'DCAR_013953' => 'dca', 'DCAR_014734' => 'dca', 'DCAR_017626' => 'dca', 'DCAR_023271' => 'dca', 'DCAR_023273' => 'dca', 'DCAR_029993' => 'dca', 'Dinv03195' => 'din', 'Dinv19826' => 'din', 'Dinv20843' => 'din', 'Dinv21259' => 'din', 'Dinv21260' => 'din', 'Dinv23941' => 'din', 'Dinv29423' => 'din', 'Dinv30660' => 'din', 'Duzib093G0950' => 'dzi', 'Duzib114G0475' => 'dzi', 'Duzib168G1001' => 'dzi', 'ECA232G0849' => 'eca', 'ECA233G0191' => 'eca', 'ECA236G3687' => 'eca', 'ECA238G1134' => 'eca', 'ECA238G4359' => 'eca', 'ECA240G1852' => 'eca', 'EL10Ac4g08943' => 'bvu', 'EL10Ac5g11585' => 'bvu', 'EL10Ac5g12151' => 'bvu', 'EL10Ac7g16995' => 'bvu', 'EL10Ac9g21080' => 'bvu', 'Eucgr.A01547' => 'egr', 'Eucgr.J00426' => 'egr', 'Eucgr.J01016' => 'egr', 'FAN02G1301' => 'fan', 'FAN02G3204' => 'fan', 'FAN04G1023' => 'fan', 'FAN05G1662' => 'fan', 'FAN05G3005' => 'fan', 'FAN05G3013' => 'fan', 'FAN05G4586' => 'fan', 'FAN08G3428' => 'fan', 'FAN09G1539' => 'fan', 'FAN09G4664' => 'fan', 'FAN11G1782' => 'fan', 'FAN14G0799' => 'fan', 'FAN14G4458' => 'fan', 'FAN15G3379' => 'fan', 'FAN16G0828' => 'fan', 'FAN18G0408' => 'fan', 'FAN20G2479' => 'fan', 'FAN21G3547' => 'fan', 'FAN24G3154' => 'fan', 'FAN27G1454' => 'fan', 'FAN27G2238' => 'fan', 'FvH4_2g10170' => 'fve', 'FvH4_3g04410' => 'fve', 'FvH4_5g29900' => 'fve', 'FvH4_6g07060' => 'fve', 'FvH4_6g17860' => 'fve', 'Glyma.03G190800' => 'gma', 'Glyma.10G065900' => 'gma', 'Glyma.10G202150' => 'gma', 'Glyma.13G151000' => 'gma', 'Glyma.20G188300' => 'gma', 'Gohir.A01G129700' => 'ghi', 'Gohir.A04G066400' => 'ghi', 'Gohir.A05G083800' => 'ghi', 'Gohir.A09G136700' => 'ghi', 'Gohir.D01G119000' => 'ghi', 'Gohir.D04G104500' => 'ghi', 'Gohir.D05G086701' => 'ghi', 'Gohir.D09G137800' => 'ghi', 'Gorai.002G145100' => 'gra', 'Gorai.006G158300' => 'gra', 'Gorai.009G088400' => 'gra', 'Gorai.009G408300' => 'gra', 'GSVIVG01031400001' => 'vvi', 'GSVIVG01033777001' => 'vvi', 'GSVIVG01034713001' => 'vvi', 'HanXRQChr01g0018671' => 'han', 'HanXRQChr04g0108701' => 'han', 'HanXRQChr07g0202991' => 'han', 'HanXRQChr11g0334091' => 'han', 'HanXRQChr13g0400001' => 'han', 'HanXRQChr14g0432601' => 'han', 'HanXRQChr14g0456351' => 'han', 'HanXRQChr16g0498811' => 'han', 'Haze_02614' => 'cav', 'Haze_19533' => 'cav', 'Haze_23450' => 'cav', 'Hma1.2p1_0567F.1_g180040' => 'hma', 'Hma1.2p1_0725F.1_g208850' => 'hma', 'Hma1.2p1_0927F.1_g237650' => 'hma', 'HPP92_005760' => 'vpl', 'HPP92_005761' => 'vpl', 'HPP92_009314' => 'vpl', 'HPP92_009315' => 'vpl', 'HPP92_016165' => 'vpl', 'HPP92_016166' => 'vpl', 'HPP92_016167' => 'vpl', 'HPP92_026209' => 'vpl', 'HPP92_026210' => 'vpl', 'HPP92_026211' => 'vpl', 'Hund04064' => 'sun', 'Hund07689' => 'sun', 'Lalb_Chr01g0018331' => 'lal', 'Lalb_Chr02g0151321' => 'lal', 'Lalb_Chr02g0151331' => 'lal', 'Lalb_Chr02g0151341' => 'lal', 'Lalb_Chr02g0151351' => 'lal', 'Lalb_Chr19g0128911' => 'lal', 'Lalb_Chr19g0128921' => 'lal', 'Lalb_Chr19g0128931' => 'lal', 'Lalb_Chr21g0315671' => 'lal', 'Lj1A221T46' => 'lonja', 'Lj1g0027290' => 'lja', 'Lj2A129T52' => 'lonja', 'Lj3A1003T41' => 'lonja', 'Lj3A932G50' => 'lonja', 'Lj3g0024881' => 'lja', 'Lj5g0002552' => 'lja', 'Lj5g0003988' => 'lja', 'Lj5g0006180' => 'lja', 'Lj5g0026634' => 'lja', 'Lsat_1_v5_gn_0_17001' => 'lsa', 'Lsat_1_v5_gn_2_102681' => 'lsa', 'Lsat_1_v5_gn_2_21401' => 'lsa', 'Lsat_1_v5_gn_2_23100' => 'lsa', 'Lsat_1_v5_gn_3_76420' => 'lsa', 'Lsat_1_v5_gn_4_110941' => 'lsa', 'Lsat_1_v5_gn_4_121940' => 'lsa', 'Lsat_1_v5_gn_5_106621' => 'lsa', 'Lsat_1_v5_gn_6_21180' => 'lsa', 'Lsat_1_v5_gn_6_27040' => 'lsa', 'Lsat_1_v5_gn_6_57640' => 'lsa', 'Lsat_1_v5_gn_6_57660' => 'lsa', 'Lsat_1_v5_gn_6_95000' => 'lsa', 'Lsat_1_v5_gn_7_68960' => 'lsa', 'Lsat_1_v5_gn_9_45340' => 'lsa', 'Lsat_1_v5_gn_9_79861' => 'lsa', 'Manes.04G008900' => 'mes', 'Manes.07G091800' => 'mes', 'Manes.08G020500' => 'mes', 'Manes.09G060800' => 'mes', 'Manes.10G055200' => 'mes', 'Manes.17G117800' => 'mes', 'Mapoly0005s0045' => 'mpo', 'Mapoly0018s0032' => 'mpo', 'MCO11G457' => 'mco', 'MD02G1245300' => 'mdo', 'MD02G1245400' => 'mdo', 'MD05G1004100' => 'mdo', 'MD07G1071800' => 'mdo', 'MD09G1259000' => 'mdo', 'MD09G1259100' => 'mdo', 'MD11G1157400' => 'mdo', 'MD12G1017600' => 'mdo', 'MD14G1015300' => 'mdo', 'MD17G1253500' => 'mdo', 'MD17G1253600' => 'mdo', 'Medtr1g061220' => 'mtr', 'Medtr1g492760' => 'mtr', 'Medtr2g008920' => 'mtr', 'Medtr2g008930' => 'mtr', 'Medtr2g075880' => 'mtr', 'Medtr2g075885' => 'mtr', 'Medtr2g075890' => 'mtr', 'Medtr2g084845' => 'mtr', 'Medtr2g099840' => 'mtr', 'Medtr2g099850' => 'mtr', 'Medtr2g099900' => 'mtr', 'Medtr5g095880' => 'mtr', 'Medtr6g088520' => 'mtr', 'Medtr6g088650' => 'mtr', 'Medtr7g005880' => 'mtr', 'Medtr7g103680' => 'mtr', 'MELO3C009432.2' => 'cme', 'MELO3C012368.2' => 'cme', 'MELO3C021451.2' => 'cme', 'MELO3C024516.2' => 'cme', 'Migut.D02337' => 'egut', 'Migut.F00888' => 'egut', 'Migut.J00987' => 'egut', 'Migut.L00220' => 'egut', 'Migut.L00221' => 'egut', 'Migut.L00609' => 'egut', 'MSTRG.19228' => 'ama', 'MSTRG.21064' => 'ama', 'MSTRG.9109' => 'ama', 'Nitab4.5_0000132g0200' => 'nta', 'Nitab4.5_0000233g0200' => 'nta', 'Nitab4.5_0001807g0090' => 'nta', 'Nitab4.5_0001922g0010' => 'nta', 'Nitab4.5_0002259g0070' => 'nta', 'Nitab4.5_0003987g0020' => 'nta', 'Nitab4.5_0005311g0020' => 'nta', 'Nitab4.5_0005460g0030' => 'nta', 'Nitab4.5_0006360g0050' => 'nta', 'Nitab4.5_0009829g0020' => 'nta', 'Nitab4.5_0010583g0010' => 'nta', 'Nn1g00052' => 'nnu', 'Nn1g05905' => 'nnu', 'Nn1g09481' => 'nnu', 'Nn2g13995' => 'nnu', 'Nn6g33515' => 'nnu', 'Oeu026559.4' => 'oeu', 'Oeu027978.3' => 'oeu', 'Oeu032421.3' => 'oeu', 'Oeu037536.1' => 'oeu', 'Oeu040537.2' => 'oeu', 'Oeu040540.1' => 'oeu', 'Oeu050180.1' => 'oeu', 'Oeu059852.1' => 'oeu', 'Os01g0218032' => 'osa', 'Os02g0494700' => 'osa', 'Os02g0496500' => 'osa', 'Os05g0445900' => 'osa', 'Os05g0446550' => 'osa', 'Os05g0446600' => 'osa', 'Peaxi162Scf00012g01927' => 'pax', 'Peaxi162Scf00017g00412' => 'pax', 'Peaxi162Scf00038g02141' => 'pax', 'Peaxi162Scf00110g01921' => 'pax', 'Peaxi162Scf00244g00044' => 'pax', 'Peaxi162Scf00433g00067' => 'pax', 'PGR004G0133' => 'pgr', 'PGR044G1748' => 'pgr', 'PGR119G1632' => 'pgr', 'PGSC0003DMG400002719' => 'stu', 'PGSC0003DMG400009172' => 'stu', 'PGSC0003DMG400028264' => 'stu', 'PGSC0003DMG400038824' => 'stu', 'Phvul.001G186500' => 'pvu', 'Phvul.003G032300' => 'pvu', 'Phvul.007G223600' => 'pvu', 'Potri.001G150001' => 'ptr', 'Potri.006G116000' => 'ptr', 'Potri.008G025900' => 'ptr', 'Potri.010G234400' => 'ptr', 'Pp3c2_260' => 'ppa', 'Pp3c4_2820' => 'ppa', 'Pp3c6_18380' => 'ppa', 'Prupe.2G089400' => 'ppe', 'Prupe.3G291400' => 'ppe', 'Prupe.6G119100' => 'ppe', 'Prupe.7G005000' => 'ppe', 'Prupe.7G118000' => 'ppe', 'Psat0s3291g0200' => 'psa', 'Psat0s5991g0040' => 'psa', 'Psat3g035920' => 'psa', 'Psat3g051720' => 'psa', 'Psat4g061600' => 'psa', 'Psat5g004440' => 'psa', 'Psat5g021240' => 'psa', 'Psat5g254920' => 'psa', 'Psat6g079040' => 'psa', 'Psat6g177080' => 'psa', 'PSO063G2265' => 'pso', 'PSO339G3200' => 'pso', 'PSO339G5206' => 'pso', 'PSO384G4302' => 'pso', 'QL03p004227' => 'qlo', 'QL04p041091' => 'qlo', 'QL07p040602' => 'qlo', 'QL08p011555' => 'qlo', 'RcHm_v2.0_Chr3g0456601' => 'rch', 'RcHm_v2.0_Chr3g0456611' => 'rch', 'RcHm_v2.0_Chr3g0472091' => 'rch', 'RcHm_v2.0_Chr6g0267351' => 'rch', 'RcHm_v2.0_Chr6g0267361' => 'rch', 'RcHm_v2.0_Chr6g0267411' => 'rch', 'Rhsim02G0128300' => 'rsi', 'Rhsim02G0166200' => 'rsi', 'Rhsim03G0081500' => 'rsi', 'Rhsim03G0106400' => 'rsi', 'Rhsim04G0135900' => 'rsi', 'Rhsim07G0188900' => 'rsi', 'Rhsim13G0105000' => 'rsi', 'Sabra06G0090700' => 'sbr', 'Sabra08G0017600' => 'sbr', 'Sabra10G0181700' => 'sbr', 'SalBow3G3680' => 'sbo', 'SalBow5G0882' => 'sbo', 'SalBow6G6340' => 'sbo', 'Sc02g0001140' => 'sci', 'Sc06g0008920' => 'sci', 'Sc09g0005580' => 'sci', 'Sc20g0006010' => 'sci', 'Sed0001020' => 'sed', 'Sed0011723' => 'sed', 'Sed0020277' => 'sed', 'Sed0022197' => 'sed', 'Sed0026916' => 'sed', 'SEGI_00076' => 'sgi', 'SEGI_01508' => 'sgi', 'SEGI_15422' => 'sgi', 'SGA_v2.0_scaffold11G05541' => 'sas', 'SGA_v2.0_scaffold193G40703' => 'sas', 'SGA_v2.0_scaffold259G45831' => 'sas', 'SGA_v2.0_scaffold40G15408' => 'sas', 'SGA_v2.0_scaffold57G20202' => 'sas', 'SMO301G0038' => 'smo', 'Solyc03g123440.3' => 'sly', 'Solyc04g047780.1' => 'sly', 'Solyc04g047810.1' => 'sly', 'Solyc04g047820.1' => 'sly', 'Solyc04g047830.1' => 'sly', 'Solyc04g054860.1' => 'sly', 'Solyc04g054870.1' => 'sly', 'Solyc04g054875.1' => 'sly', 'Solyc09g009080.4' => 'sly', 'Solyc10g083630.2' => 'sly', 'Solyc11g007580.3' => 'sly', 'Sopen03g041220' => 'spe', 'Sopen04g017990' => 'spe', 'Sopen04g024670' => 'spe', 'Sopen09g003780' => 'spe', 'Sopen10g033100' => 'spe', 'Sopen11g003420' => 'spe', 'Sp4g18800' => 'spa', 'Sp6g38200' => 'spa', 'Sp7g31790' => 'spa', 'TAR369G0069' => 'tar', 'TAR374G1051' => 'tar', 'TAR374G1072' => 'tar', 'TAR374G1252' => 'tar', 'TAR623G1502' => 'tar', 'TAR633G1723' => 'tar', 'THA.LOC104800557' => 'tha', 'THA.LOC104816454' => 'tha', 'THA.LOC104816669' => 'tha', 'THA.LOC104816670' => 'tha', 'THA.LOC104827483' => 'tha', 'Thecc.01G161900' => 'tca', 'Thecc.05G080600' => 'tca', 'Thecc.09G291800' => 'tca', 'Thecc.10G101300' => 'tca', 'Thhalv10012472m.g' => 'esa', 'Thhalv10016139m.g' => 'esa', 'Thhalv10019961m.g' => 'esa', 'Thhalv10026936m.g' => 'esa', 'TPR.G10256' => 'tpr', 'TPR.G2504' => 'tpr', 'TPR.G32369' => 'tpr', 'TPR.G34611' => 'tpr', 'TPR.G5703' => 'tpr', 'TWI38G0218' => 'twi', 'TWI38G1634' => 'twi', 'TWI53G2113' => 'twi', 'TWI63G1581' => 'twi', 'TWI75G0699' => 'twi', 'TWI77G0704' => 'twi', 'TWI79G1587' => 'twi', 'unitig_27.g25399' => 'ugi', 'unitig_37.g12333' => 'ugi', 'vmacro07222' => 'vma', 'vmacro07365' => 'vma', 'vmacro08815' => 'vma', 'vmacro09352' => 'vma', 'VMungo0720G0212' => 'vmu', 'VMungo0720G0845' => 'vmu', 'VMungo1215G0844' => 'vmu', 'VMungo1383G2283' => 'vmu', 'Zm00001eb080650' => 'zma', 'Zm00001eb202980' => 'zma', 'Zm00001eb241240' => 'zma', 'Zm00001eb241310' => 'zma', 'Zm00001eb289030' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001201' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001201' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001201' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001201' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001201', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '520', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p04360' => 'bna', 'A04p07990' => 'bna', 'A05p09310' => 'bna', 'A10p31520' => 'bna', 'Aa31csc22G50' => 'aar', 'Aa31csc22G60' => 'aar', 'Aa31csc22G70' => 'aar', 'Aa31csc22G80' => 'aar', 'Aa31LG11G5440' => 'aar', 'Aa31LG11G5450' => 'aar', 'Aa31LG2G16490' => 'aar', 'Aa31LG3G2540' => 'aar', 'Aa31LG5G21680' => 'aar', 'Aa31LG7G15440' => 'aar', 'Aa31LG7G15450' => 'aar', 'Aa31LG9G4630' => 'aar', 'Aa31LG9G4640' => 'aar', 'Aa31sc52G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3177' => 'aag', 'Actinidia06708' => 'ach', 'Actinidia18573' => 'ach', 'Actinidia18574' => 'ach', 'Actinidia28919' => 'ach', 'Actinidia31292' => 'ach', 'Actinidia31293' => 'ach', 'Actinidia31294' => 'ach', 'Actinidia33950' => 'ach', 'Actinidia34586' => 'ach', 'Actinidia34587' => 'ach', 'Ah.08g210980' => 'amhyb', 'Ah.16g107470' => 'amhyb', 'AL3G21300' => 'aly', 'AL4G32670' => 'aly', 'AL4G32680' => 'aly', 'AL6G14210' => 'aly', 'AL7G17320' => 'aly', 'Aqoxy1G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.66FLD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM3VD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUT3DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS0SHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8W5NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N246S2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R549UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBWK9U' => 'arhy', 'AT2G36490' => 'ath', 'AT3G10010' => 'ath', 'AT4G04957' => 'ath', 'AT4G34060' => 'ath', 'AT5G04560' => 'ath', 'ATR0820G039' => 'atr', 'ATR1149G052' => 'atr', 'Atru.chr12.965' => 'acertr', 'Atru.chr3.3382' => 'acertr', 'Atru.chr6.394' => 'acertr', 'Atru.chr8.1639' => 'acertr', 'AUR62002762' => 'cqu', 'AUR62004786' => 'cqu', 'AUR62023938' => 'cqu', 'AUR62028009' => 'cqu', 'AUR62028010' => 'cqu', 'AUR62033581' => 'cqu', 'AUR62037477' => 'cqu', 'AUR62038303' => 'cqu', 'AUR62041417' => 'cqu', 'BcaB02g09350' => 'bca', 'BcaB08g35661' => 'bca', 'BcaC01g01492' => 'bca', 'BcaC02g11765' => 'bca', 'BcaC06g32166' => 'bca', 'BcaNung03789' => 'bca', 'BcaNung06824' => 'bca', 'BcaNung07061' => 'bca', 'BolC1t00460H' => 'bol', 'BolC4t22808H' => 'bol', 'BolC9t59965H' => 'bol', 'BraA01t00425Z' => 'bra', 'BraA04t16488Z' => 'bra', 'BraA05t19888Z' => 'bra', 'BraA10t45198Z' => 'bra', 'C01p04760' => 'bna', 'C04p11600' => 'bna', 'C09p72210' => 'bna', 'CAN.G1138.12' => 'can', 'CAN.G135.68' => 'can', 'CAN.G282.14' => 'can', 'CAN.G344.2' => 'can', 'CAN.G668.49' => 'can', 'CAN.G824.26' => 'can', 'CAN.G824.27' => 'can', 'CANSAT25G0803' => 'cansat', 'CANSAT54G2606' => 'cansat', 'CANSAT56G1981' => 'cansat', 'CANSAT80G1516' => 'cansat', 'CARHR068350' => 'chi', 'CARHR084510' => 'chi', 'CARHR130800' => 'chi', 'CARHR133860' => 'chi', 'CARHR208710' => 'chi', 'CARHR259200' => 'chi', 'CARHR286790' => 'chi', 'CARHR286800' => 'chi', 'Carub.0003s0911' => 'cru', 'Carub.0004s1830' => 'cru', 'Carub.0004s1831' => 'cru', 'Carub.0006s0350' => 'cru', 'Carub.0007s0634' => 'cru', 'Ca_01678_v3' => 'car', 'Ca_10493_v3' => 'car', 'Ca_11125_v3' => 'car', 'Ca_11623_v3' => 'car', 'Ca_20517_v3' => 'car', 'Cc02_g10250' => 'ccan', 'Cc06_g05230' => 'ccan', 'CDE02G2714' => 'cde', 'CDE03G0091' => 'cde', 'CDE03G0262' => 'cde', 'CDE03G0461' => 'cde', 'CDE04G2541' => 'cde', 'CDE04G3083' => 'cde', 'CDE04G3509' => 'cde', 'CDE09G0105' => 'cde', 'Cfa010084' => 'cfa', 'Cfa011221' => 'cfa', 'Ciclev10010892m.g' => 'ccl', 'Ciclev10027676m.g' => 'ccl', 'Ciclev10030474m.g' => 'ccl', 'CiPaw.09G008500' => 'cil', 'CiPaw.13G036100' => 'cil', 'CiPaw.14G028400' => 'cil', 'ClCG02G021910' => 'cla', 'ClCG04G009770' => 'cla', 'ClCG05G021570' => 'cla', 'ClCG10G019400' => 'cla', 'COL.COLO4_27244' => 'col', 'COL.COLO4_28083' => 'col', 'COL.COLO4_29819' => 'col', 'COL.COLO4_30817' => 'col', 'Cpa.g.sc128.52' => 'cpa', 'Cpa.g.sc5.80' => 'cpa', 'Cpa.g.sc5.81' => 'cpa', 'Cpa.g.sc5.83' => 'cpa', 'Cre07.g355466' => 'cre', 'CsaV3_3G036780' => 'csa', 'CsaV3_5G035660' => 'csa', 'CsaV3_6G014730' => 'csa', 'CsaV3_6G040410' => 'csa', 'CSS0002130' => 'camsi', 'CSS0012668' => 'camsi', 'CSS0014168' => 'camsi', 'CSS0047502' => 'camsi', 'DCAR_000566' => 'dca', 'DCAR_004685' => 'dca', 'DCAR_006374' => 'dca', 'DCAR_013953' => 'dca', 'DCAR_014734' => 'dca', 'DCAR_017626' => 'dca', 'DCAR_023271' => 'dca', 'DCAR_023273' => 'dca', 'DCAR_029993' => 'dca', 'Dinv03195' => 'din', 'Dinv19826' => 'din', 'Dinv20843' => 'din', 'Dinv21259' => 'din', 'Dinv21260' => 'din', 'Dinv23941' => 'din', 'Dinv29423' => 'din', 'Dinv30660' => 'din', 'Duzib093G0950' => 'dzi', 'Duzib114G0475' => 'dzi', 'Duzib168G1001' => 'dzi', 'ECA232G0849' => 'eca', 'ECA233G0191' => 'eca', 'ECA236G3687' => 'eca', 'ECA238G1134' => 'eca', 'ECA238G4359' => 'eca', 'ECA240G1852' => 'eca', 'EL10Ac4g08943' => 'bvu', 'EL10Ac5g11585' => 'bvu', 'EL10Ac5g12151' => 'bvu', 'EL10Ac7g16995' => 'bvu', 'EL10Ac9g21080' => 'bvu', 'Eucgr.A01547' => 'egr', 'Eucgr.J00426' => 'egr', 'Eucgr.J01016' => 'egr', 'FAN02G1301' => 'fan', 'FAN02G3204' => 'fan', 'FAN04G1023' => 'fan', 'FAN05G1662' => 'fan', 'FAN05G3005' => 'fan', 'FAN05G3013' => 'fan', 'FAN05G4586' => 'fan', 'FAN08G3428' => 'fan', 'FAN09G1539' => 'fan', 'FAN09G4664' => 'fan', 'FAN11G1782' => 'fan', 'FAN14G0799' => 'fan', 'FAN14G4458' => 'fan', 'FAN15G3379' => 'fan', 'FAN16G0828' => 'fan', 'FAN18G0408' => 'fan', 'FAN20G2479' => 'fan', 'FAN21G3547' => 'fan', 'FAN24G3154' => 'fan', 'FAN27G1454' => 'fan', 'FAN27G2238' => 'fan', 'FvH4_2g10170' => 'fve', 'FvH4_3g04410' => 'fve', 'FvH4_5g29900' => 'fve', 'FvH4_6g07060' => 'fve', 'FvH4_6g17860' => 'fve', 'Glyma.03G190800' => 'gma', 'Glyma.10G065900' => 'gma', 'Glyma.10G202150' => 'gma', 'Glyma.13G151000' => 'gma', 'Glyma.20G188300' => 'gma', 'Gohir.A01G129700' => 'ghi', 'Gohir.A04G066400' => 'ghi', 'Gohir.A05G083800' => 'ghi', 'Gohir.A09G136700' => 'ghi', 'Gohir.D01G119000' => 'ghi', 'Gohir.D04G104500' => 'ghi', 'Gohir.D05G086701' => 'ghi', 'Gohir.D09G137800' => 'ghi', 'Gorai.002G145100' => 'gra', 'Gorai.006G158300' => 'gra', 'Gorai.009G088400' => 'gra', 'Gorai.009G408300' => 'gra', 'GSVIVG01031400001' => 'vvi', 'GSVIVG01033777001' => 'vvi', 'GSVIVG01034713001' => 'vvi', 'HanXRQChr01g0018671' => 'han', 'HanXRQChr04g0108701' => 'han', 'HanXRQChr07g0202991' => 'han', 'HanXRQChr11g0334091' => 'han', 'HanXRQChr13g0400001' => 'han', 'HanXRQChr14g0432601' => 'han', 'HanXRQChr14g0456351' => 'han', 'HanXRQChr16g0498811' => 'han', 'Haze_02614' => 'cav', 'Haze_19533' => 'cav', 'Haze_23450' => 'cav', 'Hma1.2p1_0567F.1_g180040' => 'hma', 'Hma1.2p1_0725F.1_g208850' => 'hma', 'Hma1.2p1_0927F.1_g237650' => 'hma', 'HPP92_005760' => 'vpl', 'HPP92_005761' => 'vpl', 'HPP92_009314' => 'vpl', 'HPP92_009315' => 'vpl', 'HPP92_016165' => 'vpl', 'HPP92_016166' => 'vpl', 'HPP92_016167' => 'vpl', 'HPP92_026209' => 'vpl', 'HPP92_026210' => 'vpl', 'HPP92_026211' => 'vpl', 'Hund04064' => 'sun', 'Hund07689' => 'sun', 'Lalb_Chr01g0018331' => 'lal', 'Lalb_Chr02g0151321' => 'lal', 'Lalb_Chr02g0151331' => 'lal', 'Lalb_Chr02g0151341' => 'lal', 'Lalb_Chr02g0151351' => 'lal', 'Lalb_Chr19g0128911' => 'lal', 'Lalb_Chr19g0128921' => 'lal', 'Lalb_Chr19g0128931' => 'lal', 'Lalb_Chr21g0315671' => 'lal', 'Lj1A221T46' => 'lonja', 'Lj1g0027290' => 'lja', 'Lj2A129T52' => 'lonja', 'Lj3A1003T41' => 'lonja', 'Lj3A932G50' => 'lonja', 'Lj3g0024881' => 'lja', 'Lj5g0002552' => 'lja', 'Lj5g0003988' => 'lja', 'Lj5g0006180' => 'lja', 'Lj5g0026634' => 'lja', 'Lsat_1_v5_gn_0_17001' => 'lsa', 'Lsat_1_v5_gn_2_102681' => 'lsa', 'Lsat_1_v5_gn_2_21401' => 'lsa', 'Lsat_1_v5_gn_2_23100' => 'lsa', 'Lsat_1_v5_gn_3_76420' => 'lsa', 'Lsat_1_v5_gn_4_110941' => 'lsa', 'Lsat_1_v5_gn_4_121940' => 'lsa', 'Lsat_1_v5_gn_5_106621' => 'lsa', 'Lsat_1_v5_gn_6_21180' => 'lsa', 'Lsat_1_v5_gn_6_27040' => 'lsa', 'Lsat_1_v5_gn_6_57640' => 'lsa', 'Lsat_1_v5_gn_6_57660' => 'lsa', 'Lsat_1_v5_gn_6_95000' => 'lsa', 'Lsat_1_v5_gn_7_68960' => 'lsa', 'Lsat_1_v5_gn_9_45340' => 'lsa', 'Lsat_1_v5_gn_9_79861' => 'lsa', 'Manes.04G008900' => 'mes', 'Manes.07G091800' => 'mes', 'Manes.08G020500' => 'mes', 'Manes.09G060800' => 'mes', 'Manes.10G055200' => 'mes', 'Manes.17G117800' => 'mes', 'Mapoly0005s0045' => 'mpo', 'Mapoly0018s0032' => 'mpo', 'MCO11G457' => 'mco', 'MD02G1245300' => 'mdo', 'MD02G1245400' => 'mdo', 'MD05G1004100' => 'mdo', 'MD07G1071800' => 'mdo', 'MD09G1259000' => 'mdo', 'MD09G1259100' => 'mdo', 'MD11G1157400' => 'mdo', 'MD12G1017600' => 'mdo', 'MD14G1015300' => 'mdo', 'MD17G1253500' => 'mdo', 'MD17G1253600' => 'mdo', 'Medtr1g061220' => 'mtr', 'Medtr1g492760' => 'mtr', 'Medtr2g008920' => 'mtr', 'Medtr2g008930' => 'mtr', 'Medtr2g075880' => 'mtr', 'Medtr2g075885' => 'mtr', 'Medtr2g075890' => 'mtr', 'Medtr2g084845' => 'mtr', 'Medtr2g099840' => 'mtr', 'Medtr2g099850' => 'mtr', 'Medtr2g099900' => 'mtr', 'Medtr5g095880' => 'mtr', 'Medtr6g088520' => 'mtr', 'Medtr6g088650' => 'mtr', 'Medtr7g005880' => 'mtr', 'Medtr7g103680' => 'mtr', 'MELO3C009432.2' => 'cme', 'MELO3C012368.2' => 'cme', 'MELO3C021451.2' => 'cme', 'MELO3C024516.2' => 'cme', 'Migut.D02337' => 'egut', 'Migut.F00888' => 'egut', 'Migut.J00987' => 'egut', 'Migut.L00220' => 'egut', 'Migut.L00221' => 'egut', 'Migut.L00609' => 'egut', 'MSTRG.19228' => 'ama', 'MSTRG.21064' => 'ama', 'MSTRG.9109' => 'ama', 'Nitab4.5_0000132g0200' => 'nta', 'Nitab4.5_0000233g0200' => 'nta', 'Nitab4.5_0001807g0090' => 'nta', 'Nitab4.5_0001922g0010' => 'nta', 'Nitab4.5_0002259g0070' => 'nta', 'Nitab4.5_0003987g0020' => 'nta', 'Nitab4.5_0005311g0020' => 'nta', 'Nitab4.5_0005460g0030' => 'nta', 'Nitab4.5_0006360g0050' => 'nta', 'Nitab4.5_0009829g0020' => 'nta', 'Nitab4.5_0010583g0010' => 'nta', 'Nn1g00052' => 'nnu', 'Nn1g05905' => 'nnu', 'Nn1g09481' => 'nnu', 'Nn2g13995' => 'nnu', 'Nn6g33515' => 'nnu', 'Oeu026559.4' => 'oeu', 'Oeu027978.3' => 'oeu', 'Oeu032421.3' => 'oeu', 'Oeu037536.1' => 'oeu', 'Oeu040537.2' => 'oeu', 'Oeu040540.1' => 'oeu', 'Oeu050180.1' => 'oeu', 'Oeu059852.1' => 'oeu', 'Os01g0218032' => 'osa', 'Os02g0494700' => 'osa', 'Os02g0496500' => 'osa', 'Os05g0445900' => 'osa', 'Os05g0446550' => 'osa', 'Os05g0446600' => 'osa', 'Peaxi162Scf00012g01927' => 'pax', 'Peaxi162Scf00017g00412' => 'pax', 'Peaxi162Scf00038g02141' => 'pax', 'Peaxi162Scf00110g01921' => 'pax', 'Peaxi162Scf00244g00044' => 'pax', 'Peaxi162Scf00433g00067' => 'pax', 'PGR004G0133' => 'pgr', 'PGR044G1748' => 'pgr', 'PGR119G1632' => 'pgr', 'PGSC0003DMG400002719' => 'stu', 'PGSC0003DMG400009172' => 'stu', 'PGSC0003DMG400028264' => 'stu', 'PGSC0003DMG400038824' => 'stu', 'Phvul.001G186500' => 'pvu', 'Phvul.003G032300' => 'pvu', 'Phvul.007G223600' => 'pvu', 'Potri.001G150001' => 'ptr', 'Potri.006G116000' => 'ptr', 'Potri.008G025900' => 'ptr', 'Potri.010G234400' => 'ptr', 'Pp3c2_260' => 'ppa', 'Pp3c4_2820' => 'ppa', 'Pp3c6_18380' => 'ppa', 'Prupe.2G089400' => 'ppe', 'Prupe.3G291400' => 'ppe', 'Prupe.6G119100' => 'ppe', 'Prupe.7G005000' => 'ppe', 'Prupe.7G118000' => 'ppe', 'Psat0s3291g0200' => 'psa', 'Psat0s5991g0040' => 'psa', 'Psat3g035920' => 'psa', 'Psat3g051720' => 'psa', 'Psat4g061600' => 'psa', 'Psat5g004440' => 'psa', 'Psat5g021240' => 'psa', 'Psat5g254920' => 'psa', 'Psat6g079040' => 'psa', 'Psat6g177080' => 'psa', 'PSO063G2265' => 'pso', 'PSO339G3200' => 'pso', 'PSO339G5206' => 'pso', 'PSO384G4302' => 'pso', 'QL03p004227' => 'qlo', 'QL04p041091' => 'qlo', 'QL07p040602' => 'qlo', 'QL08p011555' => 'qlo', 'RcHm_v2.0_Chr3g0456601' => 'rch', 'RcHm_v2.0_Chr3g0456611' => 'rch', 'RcHm_v2.0_Chr3g0472091' => 'rch', 'RcHm_v2.0_Chr6g0267351' => 'rch', 'RcHm_v2.0_Chr6g0267361' => 'rch', 'RcHm_v2.0_Chr6g0267411' => 'rch', 'Rhsim02G0128300' => 'rsi', 'Rhsim02G0166200' => 'rsi', 'Rhsim03G0081500' => 'rsi', 'Rhsim03G0106400' => 'rsi', 'Rhsim04G0135900' => 'rsi', 'Rhsim07G0188900' => 'rsi', 'Rhsim13G0105000' => 'rsi', 'Sabra06G0090700' => 'sbr', 'Sabra08G0017600' => 'sbr', 'Sabra10G0181700' => 'sbr', 'SalBow3G3680' => 'sbo', 'SalBow5G0882' => 'sbo', 'SalBow6G6340' => 'sbo', 'Sc02g0001140' => 'sci', 'Sc06g0008920' => 'sci', 'Sc09g0005580' => 'sci', 'Sc20g0006010' => 'sci', 'Sed0001020' => 'sed', 'Sed0011723' => 'sed', 'Sed0020277' => 'sed', 'Sed0022197' => 'sed', 'Sed0026916' => 'sed', 'SEGI_00076' => 'sgi', 'SEGI_01508' => 'sgi', 'SEGI_15422' => 'sgi', 'SGA_v2.0_scaffold11G05541' => 'sas', 'SGA_v2.0_scaffold193G40703' => 'sas', 'SGA_v2.0_scaffold259G45831' => 'sas', 'SGA_v2.0_scaffold40G15408' => 'sas', 'SGA_v2.0_scaffold57G20202' => 'sas', 'SMO301G0038' => 'smo', 'Solyc03g123440.3' => 'sly', 'Solyc04g047780.1' => 'sly', 'Solyc04g047810.1' => 'sly', 'Solyc04g047820.1' => 'sly', 'Solyc04g047830.1' => 'sly', 'Solyc04g054860.1' => 'sly', 'Solyc04g054870.1' => 'sly', 'Solyc04g054875.1' => 'sly', 'Solyc09g009080.4' => 'sly', 'Solyc10g083630.2' => 'sly', 'Solyc11g007580.3' => 'sly', 'Sopen03g041220' => 'spe', 'Sopen04g017990' => 'spe', 'Sopen04g024670' => 'spe', 'Sopen09g003780' => 'spe', 'Sopen10g033100' => 'spe', 'Sopen11g003420' => 'spe', 'Sp4g18800' => 'spa', 'Sp6g38200' => 'spa', 'Sp7g31790' => 'spa', 'TAR369G0069' => 'tar', 'TAR374G1051' => 'tar', 'TAR374G1072' => 'tar', 'TAR374G1252' => 'tar', 'TAR623G1502' => 'tar', 'TAR633G1723' => 'tar', 'THA.LOC104800557' => 'tha', 'THA.LOC104816454' => 'tha', 'THA.LOC104816669' => 'tha', 'THA.LOC104816670' => 'tha', 'THA.LOC104827483' => 'tha', 'Thecc.01G161900' => 'tca', 'Thecc.05G080600' => 'tca', 'Thecc.09G291800' => 'tca', 'Thecc.10G101300' => 'tca', 'Thhalv10012472m.g' => 'esa', 'Thhalv10016139m.g' => 'esa', 'Thhalv10019961m.g' => 'esa', 'Thhalv10026936m.g' => 'esa', 'TPR.G10256' => 'tpr', 'TPR.G2504' => 'tpr', 'TPR.G32369' => 'tpr', 'TPR.G34611' => 'tpr', 'TPR.G5703' => 'tpr', 'TWI38G0218' => 'twi', 'TWI38G1634' => 'twi', 'TWI53G2113' => 'twi', 'TWI63G1581' => 'twi', 'TWI75G0699' => 'twi', 'TWI77G0704' => 'twi', 'TWI79G1587' => 'twi', 'unitig_27.g25399' => 'ugi', 'unitig_37.g12333' => 'ugi', 'vmacro07222' => 'vma', 'vmacro07365' => 'vma', 'vmacro08815' => 'vma', 'vmacro09352' => 'vma', 'VMungo0720G0212' => 'vmu', 'VMungo0720G0845' => 'vmu', 'VMungo1215G0844' => 'vmu', 'VMungo1383G2283' => 'vmu', 'Zm00001eb080650' => 'zma', 'Zm00001eb202980' => 'zma', 'Zm00001eb241240' => 'zma', 'Zm00001eb241310' => 'zma', 'Zm00001eb289030' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001201', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001201' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001201', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '520', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001201' ) ), 'genes' => array( 'A01p04360' => 'bna', 'A04p07990' => 'bna', 'A05p09310' => 'bna', 'A10p31520' => 'bna', 'Aa31csc22G50' => 'aar', 'Aa31csc22G60' => 'aar', 'Aa31csc22G70' => 'aar', 'Aa31csc22G80' => 'aar', 'Aa31LG11G5440' => 'aar', 'Aa31LG11G5450' => 'aar', 'Aa31LG2G16490' => 'aar', 'Aa31LG3G2540' => 'aar', 'Aa31LG5G21680' => 'aar', 'Aa31LG7G15440' => 'aar', 'Aa31LG7G15450' => 'aar', 'Aa31LG9G4630' => 'aar', 'Aa31LG9G4640' => 'aar', 'Aa31sc52G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3177' => 'aag', 'Actinidia06708' => 'ach', 'Actinidia18573' => 'ach', 'Actinidia18574' => 'ach', 'Actinidia28919' => 'ach', 'Actinidia31292' => 'ach', 'Actinidia31293' => 'ach', 'Actinidia31294' => 'ach', 'Actinidia33950' => 'ach', 'Actinidia34586' => 'ach', 'Actinidia34587' => 'ach', 'Ah.08g210980' => 'amhyb', 'Ah.16g107470' => 'amhyb', 'AL3G21300' => 'aly', 'AL4G32670' => 'aly', 'AL4G32680' => 'aly', 'AL6G14210' => 'aly', 'AL7G17320' => 'aly', 'Aqoxy1G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.66FLD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AM3VD0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CUT3DD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GS0SHW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8W5NT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N246S2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R549UJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YBWK9U' => 'arhy', 'AT2G36490' => 'ath', 'AT3G10010' => 'ath', 'AT4G04957' => 'ath', 'AT4G34060' => 'ath', 'AT5G04560' => 'ath', 'ATR0820G039' => 'atr', 'ATR1149G052' => 'atr', 'Atru.chr12.965' => 'acertr', 'Atru.chr3.3382' => 'acertr', 'Atru.chr6.394' => 'acertr', 'Atru.chr8.1639' => 'acertr', 'AUR62002762' => 'cqu', 'AUR62004786' => 'cqu', 'AUR62023938' => 'cqu', 'AUR62028009' => 'cqu', 'AUR62028010' => 'cqu', 'AUR62033581' => 'cqu', 'AUR62037477' => 'cqu', 'AUR62038303' => 'cqu', 'AUR62041417' => 'cqu', 'BcaB02g09350' => 'bca', 'BcaB08g35661' => 'bca', 'BcaC01g01492' => 'bca', 'BcaC02g11765' => 'bca', 'BcaC06g32166' => 'bca', 'BcaNung03789' => 'bca', 'BcaNung06824' => 'bca', 'BcaNung07061' => 'bca', 'BolC1t00460H' => 'bol', 'BolC4t22808H' => 'bol', 'BolC9t59965H' => 'bol', 'BraA01t00425Z' => 'bra', 'BraA04t16488Z' => 'bra', 'BraA05t19888Z' => 'bra', 'BraA10t45198Z' => 'bra', 'C01p04760' => 'bna', 'C04p11600' => 'bna', 'C09p72210' => 'bna', 'CAN.G1138.12' => 'can', 'CAN.G135.68' => 'can', 'CAN.G282.14' => 'can', 'CAN.G344.2' => 'can', 'CAN.G668.49' => 'can', 'CAN.G824.26' => 'can', 'CAN.G824.27' => 'can', 'CANSAT25G0803' => 'cansat', 'CANSAT54G2606' => 'cansat', 'CANSAT56G1981' => 'cansat', 'CANSAT80G1516' => 'cansat', 'CARHR068350' => 'chi', 'CARHR084510' => 'chi', 'CARHR130800' => 'chi', 'CARHR133860' => 'chi', 'CARHR208710' => 'chi', 'CARHR259200' => 'chi', 'CARHR286790' => 'chi', 'CARHR286800' => 'chi', 'Carub.0003s0911' => 'cru', 'Carub.0004s1830' => 'cru', 'Carub.0004s1831' => 'cru', 'Carub.0006s0350' => 'cru', 'Carub.0007s0634' => 'cru', 'Ca_01678_v3' => 'car', 'Ca_10493_v3' => 'car', 'Ca_11125_v3' => 'car', 'Ca_11623_v3' => 'car', 'Ca_20517_v3' => 'car', 'Cc02_g10250' => 'ccan', 'Cc06_g05230' => 'ccan', 'CDE02G2714' => 'cde', 'CDE03G0091' => 'cde', 'CDE03G0262' => 'cde', 'CDE03G0461' => 'cde', 'CDE04G2541' => 'cde', 'CDE04G3083' => 'cde', 'CDE04G3509' => 'cde', 'CDE09G0105' => 'cde', 'Cfa010084' => 'cfa', 'Cfa011221' => 'cfa', 'Ciclev10010892m.g' => 'ccl', 'Ciclev10027676m.g' => 'ccl', 'Ciclev10030474m.g' => 'ccl', 'CiPaw.09G008500' => 'cil', 'CiPaw.13G036100' => 'cil', 'CiPaw.14G028400' => 'cil', 'ClCG02G021910' => 'cla', 'ClCG04G009770' => 'cla', 'ClCG05G021570' => 'cla', 'ClCG10G019400' => 'cla', 'COL.COLO4_27244' => 'col', 'COL.COLO4_28083' => 'col', 'COL.COLO4_29819' => 'col', 'COL.COLO4_30817' => 'col', 'Cpa.g.sc128.52' => 'cpa', 'Cpa.g.sc5.80' => 'cpa', 'Cpa.g.sc5.81' => 'cpa', 'Cpa.g.sc5.83' => 'cpa', 'Cre07.g355466' => 'cre', 'CsaV3_3G036780' => 'csa', 'CsaV3_5G035660' => 'csa', 'CsaV3_6G014730' => 'csa', 'CsaV3_6G040410' => 'csa', 'CSS0002130' => 'camsi', 'CSS0012668' => 'camsi', 'CSS0014168' => 'camsi', 'CSS0047502' => 'camsi', 'DCAR_000566' => 'dca', 'DCAR_004685' => 'dca', 'DCAR_006374' => 'dca', 'DCAR_013953' => 'dca', 'DCAR_014734' => 'dca', 'DCAR_017626' => 'dca', 'DCAR_023271' => 'dca', 'DCAR_023273' => 'dca', 'DCAR_029993' => 'dca', 'Dinv03195' => 'din', 'Dinv19826' => 'din', 'Dinv20843' => 'din', 'Dinv21259' => 'din', 'Dinv21260' => 'din', 'Dinv23941' => 'din', 'Dinv29423' => 'din', 'Dinv30660' => 'din', 'Duzib093G0950' => 'dzi', 'Duzib114G0475' => 'dzi', 'Duzib168G1001' => 'dzi', 'ECA232G0849' => 'eca', 'ECA233G0191' => 'eca', 'ECA236G3687' => 'eca', 'ECA238G1134' => 'eca', 'ECA238G4359' => 'eca', 'ECA240G1852' => 'eca', 'EL10Ac4g08943' => 'bvu', 'EL10Ac5g11585' => 'bvu', 'EL10Ac5g12151' => 'bvu', 'EL10Ac7g16995' => 'bvu', 'EL10Ac9g21080' => 'bvu', 'Eucgr.A01547' => 'egr', 'Eucgr.J00426' => 'egr', 'Eucgr.J01016' => 'egr', 'FAN02G1301' => 'fan', 'FAN02G3204' => 'fan', 'FAN04G1023' => 'fan', 'FAN05G1662' => 'fan', 'FAN05G3005' => 'fan', 'FAN05G3013' => 'fan', 'FAN05G4586' => 'fan', 'FAN08G3428' => 'fan', 'FAN09G1539' => 'fan', 'FAN09G4664' => 'fan', 'FAN11G1782' => 'fan', 'FAN14G0799' => 'fan', 'FAN14G4458' => 'fan', 'FAN15G3379' => 'fan', 'FAN16G0828' => 'fan', 'FAN18G0408' => 'fan', 'FAN20G2479' => 'fan', 'FAN21G3547' => 'fan', 'FAN24G3154' => 'fan', 'FAN27G1454' => 'fan', 'FAN27G2238' => 'fan', 'FvH4_2g10170' => 'fve', 'FvH4_3g04410' => 'fve', 'FvH4_5g29900' => 'fve', 'FvH4_6g07060' => 'fve', 'FvH4_6g17860' => 'fve', 'Glyma.03G190800' => 'gma', 'Glyma.10G065900' => 'gma', 'Glyma.10G202150' => 'gma', 'Glyma.13G151000' => 'gma', 'Glyma.20G188300' => 'gma', 'Gohir.A01G129700' => 'ghi', 'Gohir.A04G066400' => 'ghi', 'Gohir.A05G083800' => 'ghi', 'Gohir.A09G136700' => 'ghi', 'Gohir.D01G119000' => 'ghi', 'Gohir.D04G104500' => 'ghi', 'Gohir.D05G086701' => 'ghi', 'Gohir.D09G137800' => 'ghi', 'Gorai.002G145100' => 'gra', 'Gorai.006G158300' => 'gra', 'Gorai.009G088400' => 'gra', 'Gorai.009G408300' => 'gra', 'GSVIVG01031400001' => 'vvi', 'GSVIVG01033777001' => 'vvi', 'GSVIVG01034713001' => 'vvi', 'HanXRQChr01g0018671' => 'han', 'HanXRQChr04g0108701' => 'han', 'HanXRQChr07g0202991' => 'han', 'HanXRQChr11g0334091' => 'han', 'HanXRQChr13g0400001' => 'han', 'HanXRQChr14g0432601' => 'han', 'HanXRQChr14g0456351' => 'han', 'HanXRQChr16g0498811' => 'han', 'Haze_02614' => 'cav', 'Haze_19533' => 'cav', 'Haze_23450' => 'cav', 'Hma1.2p1_0567F.1_g180040' => 'hma', 'Hma1.2p1_0725F.1_g208850' => 'hma', 'Hma1.2p1_0927F.1_g237650' => 'hma', 'HPP92_005760' => 'vpl', 'HPP92_005761' => 'vpl', 'HPP92_009314' => 'vpl', 'HPP92_009315' => 'vpl', 'HPP92_016165' => 'vpl', 'HPP92_016166' => 'vpl', 'HPP92_016167' => 'vpl', 'HPP92_026209' => 'vpl', 'HPP92_026210' => 'vpl', 'HPP92_026211' => 'vpl', 'Hund04064' => 'sun', 'Hund07689' => 'sun', 'Lalb_Chr01g0018331' => 'lal', 'Lalb_Chr02g0151321' => 'lal', 'Lalb_Chr02g0151331' => 'lal', 'Lalb_Chr02g0151341' => 'lal', 'Lalb_Chr02g0151351' => 'lal', 'Lalb_Chr19g0128911' => 'lal', 'Lalb_Chr19g0128921' => 'lal', 'Lalb_Chr19g0128931' => 'lal', 'Lalb_Chr21g0315671' => 'lal', 'Lj1A221T46' => 'lonja', 'Lj1g0027290' => 'lja', 'Lj2A129T52' => 'lonja', 'Lj3A1003T41' => 'lonja', 'Lj3A932G50' => 'lonja', 'Lj3g0024881' => 'lja', 'Lj5g0002552' => 'lja', 'Lj5g0003988' => 'lja', 'Lj5g0006180' => 'lja', 'Lj5g0026634' => 'lja', 'Lsat_1_v5_gn_0_17001' => 'lsa', 'Lsat_1_v5_gn_2_102681' => 'lsa', 'Lsat_1_v5_gn_2_21401' => 'lsa', 'Lsat_1_v5_gn_2_23100' => 'lsa', 'Lsat_1_v5_gn_3_76420' => 'lsa', 'Lsat_1_v5_gn_4_110941' => 'lsa', 'Lsat_1_v5_gn_4_121940' => 'lsa', 'Lsat_1_v5_gn_5_106621' => 'lsa', 'Lsat_1_v5_gn_6_21180' => 'lsa', 'Lsat_1_v5_gn_6_27040' => 'lsa', 'Lsat_1_v5_gn_6_57640' => 'lsa', 'Lsat_1_v5_gn_6_57660' => 'lsa', 'Lsat_1_v5_gn_6_95000' => 'lsa', 'Lsat_1_v5_gn_7_68960' => 'lsa', 'Lsat_1_v5_gn_9_45340' => 'lsa', 'Lsat_1_v5_gn_9_79861' => 'lsa', 'Manes.04G008900' => 'mes', 'Manes.07G091800' => 'mes', 'Manes.08G020500' => 'mes', 'Manes.09G060800' => 'mes', 'Manes.10G055200' => 'mes', 'Manes.17G117800' => 'mes', 'Mapoly0005s0045' => 'mpo', 'Mapoly0018s0032' => 'mpo', 'MCO11G457' => 'mco', 'MD02G1245300' => 'mdo', 'MD02G1245400' => 'mdo', 'MD05G1004100' => 'mdo', 'MD07G1071800' => 'mdo', 'MD09G1259000' => 'mdo', 'MD09G1259100' => 'mdo', 'MD11G1157400' => 'mdo', 'MD12G1017600' => 'mdo', 'MD14G1015300' => 'mdo', 'MD17G1253500' => 'mdo', 'MD17G1253600' => 'mdo', 'Medtr1g061220' => 'mtr', 'Medtr1g492760' => 'mtr', 'Medtr2g008920' => 'mtr', 'Medtr2g008930' => 'mtr', 'Medtr2g075880' => 'mtr', 'Medtr2g075885' => 'mtr', 'Medtr2g075890' => 'mtr', 'Medtr2g084845' => 'mtr', 'Medtr2g099840' => 'mtr', 'Medtr2g099850' => 'mtr', 'Medtr2g099900' => 'mtr', 'Medtr5g095880' => 'mtr', 'Medtr6g088520' => 'mtr', 'Medtr6g088650' => 'mtr', 'Medtr7g005880' => 'mtr', 'Medtr7g103680' => 'mtr', 'MELO3C009432.2' => 'cme', 'MELO3C012368.2' => 'cme', 'MELO3C021451.2' => 'cme', 'MELO3C024516.2' => 'cme', 'Migut.D02337' => 'egut', 'Migut.F00888' => 'egut', 'Migut.J00987' => 'egut', 'Migut.L00220' => 'egut', 'Migut.L00221' => 'egut', 'Migut.L00609' => 'egut', 'MSTRG.19228' => 'ama', 'MSTRG.21064' => 'ama', 'MSTRG.9109' => 'ama', 'Nitab4.5_0000132g0200' => 'nta', 'Nitab4.5_0000233g0200' => 'nta', 'Nitab4.5_0001807g0090' => 'nta', 'Nitab4.5_0001922g0010' => 'nta', 'Nitab4.5_0002259g0070' => 'nta', 'Nitab4.5_0003987g0020' => 'nta', 'Nitab4.5_0005311g0020' => 'nta', 'Nitab4.5_0005460g0030' => 'nta', 'Nitab4.5_0006360g0050' => 'nta', 'Nitab4.5_0009829g0020' => 'nta', 'Nitab4.5_0010583g0010' => 'nta', 'Nn1g00052' => 'nnu', 'Nn1g05905' => 'nnu', 'Nn1g09481' => 'nnu', 'Nn2g13995' => 'nnu', 'Nn6g33515' => 'nnu', 'Oeu026559.4' => 'oeu', 'Oeu027978.3' => 'oeu', 'Oeu032421.3' => 'oeu', 'Oeu037536.1' => 'oeu', 'Oeu040537.2' => 'oeu', 'Oeu040540.1' => 'oeu', 'Oeu050180.1' => 'oeu', 'Oeu059852.1' => 'oeu', 'Os01g0218032' => 'osa', 'Os02g0494700' => 'osa', 'Os02g0496500' => 'osa', 'Os05g0445900' => 'osa', 'Os05g0446550' => 'osa', 'Os05g0446600' => 'osa', 'Peaxi162Scf00012g01927' => 'pax', 'Peaxi162Scf00017g00412' => 'pax', 'Peaxi162Scf00038g02141' => 'pax', 'Peaxi162Scf00110g01921' => 'pax', 'Peaxi162Scf00244g00044' => 'pax', 'Peaxi162Scf00433g00067' => 'pax', 'PGR004G0133' => 'pgr', 'PGR044G1748' => 'pgr', 'PGR119G1632' => 'pgr', 'PGSC0003DMG400002719' => 'stu', 'PGSC0003DMG400009172' => 'stu', 'PGSC0003DMG400028264' => 'stu', 'PGSC0003DMG400038824' => 'stu', 'Phvul.001G186500' => 'pvu', 'Phvul.003G032300' => 'pvu', 'Phvul.007G223600' => 'pvu', 'Potri.001G150001' => 'ptr', 'Potri.006G116000' => 'ptr', 'Potri.008G025900' => 'ptr', 'Potri.010G234400' => 'ptr', 'Pp3c2_260' => 'ppa', 'Pp3c4_2820' => 'ppa', 'Pp3c6_18380' => 'ppa', 'Prupe.2G089400' => 'ppe', 'Prupe.3G291400' => 'ppe', 'Prupe.6G119100' => 'ppe', 'Prupe.7G005000' => 'ppe', 'Prupe.7G118000' => 'ppe', 'Psat0s3291g0200' => 'psa', 'Psat0s5991g0040' => 'psa', 'Psat3g035920' => 'psa', 'Psat3g051720' => 'psa', 'Psat4g061600' => 'psa', 'Psat5g004440' => 'psa', 'Psat5g021240' => 'psa', 'Psat5g254920' => 'psa', 'Psat6g079040' => 'psa', 'Psat6g177080' => 'psa', 'PSO063G2265' => 'pso', 'PSO339G3200' => 'pso', 'PSO339G5206' => 'pso', 'PSO384G4302' => 'pso', 'QL03p004227' => 'qlo', 'QL04p041091' => 'qlo', 'QL07p040602' => 'qlo', 'QL08p011555' => 'qlo', 'RcHm_v2.0_Chr3g0456601' => 'rch', 'RcHm_v2.0_Chr3g0456611' => 'rch', 'RcHm_v2.0_Chr3g0472091' => 'rch', 'RcHm_v2.0_Chr6g0267351' => 'rch', 'RcHm_v2.0_Chr6g0267361' => 'rch', 'RcHm_v2.0_Chr6g0267411' => 'rch', 'Rhsim02G0128300' => 'rsi', 'Rhsim02G0166200' => 'rsi', 'Rhsim03G0081500' => 'rsi', 'Rhsim03G0106400' => 'rsi', 'Rhsim04G0135900' => 'rsi', 'Rhsim07G0188900' => 'rsi', 'Rhsim13G0105000' => 'rsi', 'Sabra06G0090700' => 'sbr', 'Sabra08G0017600' => 'sbr', 'Sabra10G0181700' => 'sbr', 'SalBow3G3680' => 'sbo', 'SalBow5G0882' => 'sbo', 'SalBow6G6340' => 'sbo', 'Sc02g0001140' => 'sci', 'Sc06g0008920' => 'sci', 'Sc09g0005580' => 'sci', 'Sc20g0006010' => 'sci', 'Sed0001020' => 'sed', 'Sed0011723' => 'sed', 'Sed0020277' => 'sed', 'Sed0022197' => 'sed', 'Sed0026916' => 'sed', 'SEGI_00076' => 'sgi', 'SEGI_01508' => 'sgi', 'SEGI_15422' => 'sgi', 'SGA_v2.0_scaffold11G05541' => 'sas', 'SGA_v2.0_scaffold193G40703' => 'sas', 'SGA_v2.0_scaffold259G45831' => 'sas', 'SGA_v2.0_scaffold40G15408' => 'sas', 'SGA_v2.0_scaffold57G20202' => 'sas', 'SMO301G0038' => 'smo', 'Solyc03g123440.3' => 'sly', 'Solyc04g047780.1' => 'sly', 'Solyc04g047810.1' => 'sly', 'Solyc04g047820.1' => 'sly', 'Solyc04g047830.1' => 'sly', 'Solyc04g054860.1' => 'sly', 'Solyc04g054870.1' => 'sly', 'Solyc04g054875.1' => 'sly', 'Solyc09g009080.4' => 'sly', 'Solyc10g083630.2' => 'sly', 'Solyc11g007580.3' => 'sly', 'Sopen03g041220' => 'spe', 'Sopen04g017990' => 'spe', 'Sopen04g024670' => 'spe', 'Sopen09g003780' => 'spe', 'Sopen10g033100' => 'spe', 'Sopen11g003420' => 'spe', 'Sp4g18800' => 'spa', 'Sp6g38200' => 'spa', 'Sp7g31790' => 'spa', 'TAR369G0069' => 'tar', 'TAR374G1051' => 'tar', 'TAR374G1072' => 'tar', 'TAR374G1252' => 'tar', 'TAR623G1502' => 'tar', 'TAR633G1723' => 'tar', 'THA.LOC104800557' => 'tha', 'THA.LOC104816454' => 'tha', 'THA.LOC104816669' => 'tha', 'THA.LOC104816670' => 'tha', 'THA.LOC104827483' => 'tha', 'Thecc.01G161900' => 'tca', 'Thecc.05G080600' => 'tca', 'Thecc.09G291800' => 'tca', 'Thecc.10G101300' => 'tca', 'Thhalv10012472m.g' => 'esa', 'Thhalv10016139m.g' => 'esa', 'Thhalv10019961m.g' => 'esa', 'Thhalv10026936m.g' => 'esa', 'TPR.G10256' => 'tpr', 'TPR.G2504' => 'tpr', 'TPR.G32369' => 'tpr', 'TPR.G34611' => 'tpr', 'TPR.G5703' => 'tpr', 'TWI38G0218' => 'twi', 'TWI38G1634' => 'twi', 'TWI53G2113' => 'twi', 'TWI63G1581' => 'twi', 'TWI75G0699' => 'twi', 'TWI77G0704' => 'twi', 'TWI79G1587' => 'twi', 'unitig_27.g25399' => 'ugi', 'unitig_37.g12333' => 'ugi', 'vmacro07222' => 'vma', 'vmacro07365' => 'vma', 'vmacro08815' => 'vma', 'vmacro09352' => 'vma', 'VMungo0720G0212' => 'vmu', 'VMungo0720G0845' => 'vmu', 'VMungo1215G0844' => 'vmu', 'VMungo1383G2283' => 'vmu', 'Zm00001eb080650' => 'zma', 'Zm00001eb202980' => 'zma', 'Zm00001eb241240' => 'zma', 'Zm00001eb241310' => 'zma', 'Zm00001eb289030' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001201' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001201' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001201' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001201' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151