Gene: Sopen04g030350
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen04g030350
- Transcript Identifier Sopen04g030350.1
- Gene Type Coding gene
- Location Spenn-ch04 : 72025555-72040744 : negative
Gene Family Information
- ID HOM05D000004
- #Genes/#Species 19584/91
- Phylogenetic origin
- ID ORTHO05D000002
- #Genes/#Species 15655/89
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen04g030350.1
Descriptions
- Description Rhamnogalacturonate lyase family protein | CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase , Carbohydrate-binding-like fold , Galactose-binding domain-like | BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005975 | IEA | InterPro | carbohydrate metabolic process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030246 | IEA | InterPro | carbohydrate binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0008270 | IEA | InterPro | zinc ion binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR014718 | Glycoside hydrolase-type carbohydrate-binding |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR000477 | Reverse transcriptase domain |
| IPR021109 | Aspartic peptidase domain superfamily |
| IPR016197 | Chromo-like domain superfamily |
| IPR041373 | Reverse transcriptase, RNase H-like domain |
| IPR036397 | Ribonuclease H superfamily |
| IPR005162 | Retrotransposon gag domain |
| IPR041588 | Integrase zinc-binding domain |
| IPR013784 | Carbohydrate-binding-like fold |
| IPR011013 | Galactose mutarotase-like domain superfamily |
| IPR029413 | Rhamnogalacturonan lyase, domain II |
| IPR010325 | Rhamnogalacturonate lyase |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR001878 | Zinc finger, CCHC-type |
| IPR029411 | Rhamnogalacturonan lyase, domain III |
| IPR008979 | Galactose-binding-like domain superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |