Gene: Sopen04g030360
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen04g030360
- Transcript Identifier Sopen04g030360.1
- Gene Type Coding gene
- Location Spenn-ch04 : 72047374-72051895 : negative
Gene Family Information
- ID HOM05D000583
- #Genes/#Species 954/96
- Phylogenetic origin
- ID ORTHO05D000442
- #Genes/#Species 922/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen04g030360.1
Descriptions
- Description Rhamnogalacturonate lyase family protein | CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase , Carbohydrate-binding-like fold , Galactose-binding domain-like | BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005975 | IEA | InterPro | carbohydrate metabolic process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0030246 | IEA | InterPro | carbohydrate binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005774 | ISO | PLAZA Integrative Orthology | vacuolar membrane | AT4G24430 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR011013 | Galactose mutarotase-like domain superfamily |
| IPR029411 | Rhamnogalacturonan lyase, domain III |
| IPR014718 | Glycoside hydrolase-type carbohydrate-binding |
| IPR013784 | Carbohydrate-binding-like fold |
| IPR008979 | Galactose-binding-like domain superfamily |
| IPR010325 | Rhamnogalacturonate lyase |
| IPR029413 | Rhamnogalacturonan lyase, domain II |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |