Gene: Pp3c17_5920
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c17_5920
- Transcript Identifier Pp3c17_5920V3.1
- Gene Type Coding gene
- Location Chr17 : 4482197-4485468 : negative
Gene Family Information
- ID HOM05D000042
- #Genes/#Species 4894/100
- Phylogenetic origin
- ID ORTHO05D000028
- #Genes/#Species 3637/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- name Pp3c17_5920V3.1
- pacid 32908033
- alias Phpat.017G019900
- alias Pp1s26_90V6
- uniprot A0A2K1J2V3
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0045944 | IEA | GOA Database | positive regulation of transcription by RNA polymerase II | |
| GO:0045944 | IEA | InterPro | positive regulation of transcription by RNA polymerase II | |
| GO:0006357 | IBA | GOA Database | regulation of transcription by RNA polymerase II | |
| GO:0010262 | ISO | PLAZA Integrative Orthology | somatic embryogenesis | AT5G13790 |
| GO:0010022 | ISO | PLAZA Integrative Orthology | meristem determinacy | Os02g0682200 |
| GO:0010582 | ISO | PLAZA Integrative Orthology | floral meristem determinacy | AT1G26310 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT5G13790 |
| GO:0060560 | ISO | PLAZA Integrative Orthology | developmental growth involved in morphogenesis | AT5G60910 |
| GO:0009555 | ISO | PLAZA Integrative Orthology | pollen development | AT3G61120 |
| GO:0048833 | ISO | PLAZA Integrative Orthology | specification of floral organ number | AT1G24260 |
| GO:0048437 | ISO | PLAZA Integrative Orthology | floral organ development | AT2G45650 |
| GO:0048316 | ISO | PLAZA Integrative Orthology | seed development | AT4G09960 |
| GO:0045487 | ISO | PLAZA Integrative Orthology | gibberellin catabolic process | AT5G13790 |
| GO:0009553 | ISO | PLAZA Integrative Orthology | embryo sac development | Os02g0682200 |
| GO:0009835 | ISO | PLAZA Integrative Orthology | fruit ripening | Solyc07g055920.4 |
| GO:0009911 | ISO | PLAZA Integrative Orthology | positive regulation of flower development | AT1G26310 |
| GO:0009910 | ISO | PLAZA Integrative Orthology | negative regulation of flower development | AT3G57390 |
| GO:0048441 | ISO | PLAZA Integrative Orthology | petal development | AT2G03710 |
| GO:0048440 | ISO | PLAZA Integrative Orthology | carpel development | AT4G18960 |
| GO:0009909 | ISO | PLAZA Integrative Orthology | regulation of flower development | AT5G51860 |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT5G13790 |
| GO:0009908 | ISO | PLAZA Integrative Orthology | flower development | AT1G24260 |
| GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | AT1G69120 |
| GO:0048444 | ISO | PLAZA Integrative Orthology | floral organ morphogenesis | Os04g0580700 |
| GO:0048443 | ISO | PLAZA Integrative Orthology | stamen development | AT4G18960 |
| GO:0048366 | ISO | PLAZA Integrative Orthology | leaf development | AT4G18960 |
| GO:0048442 | ISO | PLAZA Integrative Orthology | sepal development | AT2G03710 |
| GO:0010214 | ISO | PLAZA Integrative Orthology | seed coat development | AT1G24260 |
| GO:0048481 | ISO | PLAZA Integrative Orthology | plant ovule development | AT3G61120 |
| GO:0001708 | ISO | PLAZA Integrative Orthology | cell fate specification | AT1G24260 |
| GO:0048283 | ISO | PLAZA Integrative Orthology | indeterminate inflorescence morphogenesis | Os12g0207000 |
| GO:0016117 | ISO | PLAZA Integrative Orthology | carotenoid biosynthetic process | Solyc05g012020.4 |
| GO:0080060 | ISO | PLAZA Integrative Orthology | integument development | AT4G09960 |
| GO:0010154 | ISO | PLAZA Integrative Orthology | fruit development | Solyc07g055920.4 |
| GO:0010077 | ISO | PLAZA Integrative Orthology | maintenance of inflorescence meristem identity | AT2G45660 |
| GO:0010076 | ISO | PLAZA Integrative Orthology | maintenance of floral meristem identity | AT4G11880 |
| GO:2000692 | ISO | PLAZA Integrative Orthology | negative regulation of seed maturation | AT5G13790 |
| GO:0010150 | ISO | PLAZA Integrative Orthology | leaf senescence | AT5G62165 |
| GO:0080187 | ISO | PLAZA Integrative Orthology | floral organ senescence | AT5G62165 |
| GO:0048449 | ISO | PLAZA Integrative Orthology | floral organ formation | Os02g0682200 |
| GO:1903338 | ISO | PLAZA Integrative Orthology | regulation of cell wall organization or biogenesis | AT4G09960 |
| GO:0007584 | ISO | PLAZA Integrative Orthology | response to nutrient | AT2G14210 |
| GO:0048527 | ISO | PLAZA Integrative Orthology | lateral root development | AT2G14210 |
| GO:0009838 | ISO | PLAZA Integrative Orthology | abscission | AT5G62165 |
| GO:0010629 | ISO | PLAZA Integrative Orthology | negative regulation of gene expression | AT5G13790 |
| GO:0009836 | ISO | PLAZA Integrative Orthology | fruit ripening, climacteric | Solyc05g012020.4 |
| GO:0048577 | ISO | PLAZA Integrative Orthology | negative regulation of short-day photoperiodism, flowering | AT3G57390 |
| GO:0071365 | ISO | PLAZA Integrative Orthology | cellular response to auxin stimulus | AT5G13790 |
| GO:0048455 | ISO | PLAZA Integrative Orthology | stamen formation | Os02g0682200 |
| GO:0048497 | ISO | PLAZA Integrative Orthology | maintenance of floral organ identity | AT4G18960 |
| GO:0048574 | ISO | PLAZA Integrative Orthology | long-day photoperiodism, flowering | AT3G57230 |
| GO:0010468 | ISO | PLAZA Integrative Orthology | regulation of gene expression | AT3G61120 |
| GO:0010622 | ISO | PLAZA Integrative Orthology | specification of ovule identity | Os12g0207000 |
| GO:0071249 | ISO | PLAZA Integrative Orthology | cellular response to nitrate | AT2G14210 |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT4G11880 |
| GO:0010227 | ISO | PLAZA Integrative Orthology | floral organ abscission | AT5G13790 |
| GO:0010223 | ISO | PLAZA Integrative Orthology | secondary shoot formation | AT3G30260 |
| GO:0010440 | ISO | PLAZA Integrative Orthology | stomatal lineage progression | AT3G57230 |
| GO:0010082 | ISO | PLAZA Integrative Orthology | regulation of root meristem growth | AT4G11880 |
| GO:0080155 | ISO | PLAZA Integrative Orthology | regulation of double fertilization forming a zygote and endosperm | AT4G09960 |
| GO:0080112 | ISO | PLAZA Integrative Orthology | seed growth | Os02g0682200 |
| GO:0060867 | ISO | PLAZA Integrative Orthology | fruit abscission | AT5G13790 |
| GO:0048459 | ISO | PLAZA Integrative Orthology | floral whorl structural organization | Os02g0682200 |
| GO:0048578 | ISO | PLAZA Integrative Orthology | positive regulation of long-day photoperiodism, flowering | AT2G22630 |
| GO:0048457 | ISO | PLAZA Integrative Orthology | floral whorl morphogenesis | Os02g0682200 |
| GO:0060862 | ISO | PLAZA Integrative Orthology | negative regulation of floral organ abscission | AT5G13790 |
| GO:0009933 | ISO | PLAZA Integrative Orthology | meristem structural organization | AT1G69120 |
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT2G45660 |
| GO:0051302 | ISO | PLAZA Integrative Orthology | regulation of cell division | AT4G09960 |
| GO:2000012 | ISO | PLAZA Integrative Orthology | regulation of auxin polar transport | AT4G11880 |
| GO:0010311 | ISO | PLAZA Integrative Orthology | lateral root formation | AT3G30260 |
| GO:0010097 | ISO | PLAZA Integrative Orthology | specification of stamen identity | Os01g0201700 |
| GO:0048509 | ISO | PLAZA Integrative Orthology | regulation of meristem development | Os02g0682200 |
| GO:0010093 | ISO | PLAZA Integrative Orthology | specification of floral organ identity | AT1G24260 |
| GO:0080001 | ISO | PLAZA Integrative Orthology | mucilage extrusion from seed coat | AT1G24260 |
| GO:0010094 | ISO | PLAZA Integrative Orthology | specification of carpel identity | Os02g0682200 |
| GO:0009739 | ISO | PLAZA Integrative Orthology | response to gibberellin | AT2G45660 |
| GO:0048510 | ISO | PLAZA Integrative Orthology | regulation of timing of transition from vegetative to reproductive phase | AT4G22950 |
| GO:0010167 | ISO | PLAZA Integrative Orthology | response to nitrate | AT2G14210 |
| GO:0010364 | ISO | PLAZA Integrative Orthology | regulation of ethylene biosynthetic process | Solyc05g012020.4 |
| GO:0010048 | ISO | PLAZA Integrative Orthology | vernalization response | AT4G22950 |
| GO:0010047 | ISO | PLAZA Integrative Orthology | fruit dehiscence | AT5G13790 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0046983 | IEA | GOA Database | protein dimerization activity | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0003700 | IEA | GOA Database | DNA-binding transcription factor activity | |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0000977 | IEA | GOA Database | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0000977 | IEA | InterPro | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0000981 | IBA | GOA Database | DNA-binding transcription factor activity, RNA polymerase II-specific | |
| GO:0000978 | IBA | GOA Database | RNA polymerase II cis-regulatory region sequence-specific DNA binding | |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT3G58780 |
| GO:0046982 | ISO | PLAZA Integrative Orthology | protein heterodimerization activity | AT1G69120 |
| GO:0140110 | ISO | PLAZA Integrative Orthology | transcription regulator activity | AT5G13790 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G61120 |
| GO:0043565 | ISO | PLAZA Integrative Orthology | sequence-specific DNA binding | AT5G60910 |
| GO:0042803 | ISO | PLAZA Integrative Orthology | protein homodimerization activity | AT3G57230 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0090397 | ISO | PLAZA Integrative Orthology | stigma papilla | AT4G09960 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT4G11880 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.14 | RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) |