Gene: AT4G09960
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G09960
- Transcript Identifier AT4G09960.4
- Gene Type Coding gene
- Location Chr4 : 6236713-6241022 : negative
Gene Family Information
- ID HOM05D000042
- #Genes/#Species 4894/100
- Phylogenetic origin
- ID ORTHO05D000028
- #Genes/#Species 3637/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT4G09960.4
- symbol STK
- Alias AGL11,AGAMOUS-like 11
- full_name SEEDSTICK
- uniprot Q38836
Descriptions
- Description K-box region and MADS-box transcription factor family protein
- Computational description SEEDSTICK (STK); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT2G42830.1); Has 7129 Blast hits to 7128 proteins in 907 species: Archae - 0; Bacteria - 6; Metazoa - 637; Fungi - 309; Plants - 6073; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
- Computational description SEEDSTICK (STK); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development; LOCATED IN: nucleus; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT2G42830.2).
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Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0080060 | IGI | Gene Ontology | integument development | 1 |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IMP ISS | Gene Ontology | regulation of transcription, DNA-templated | 2 3 |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0051302 | IGI | Gene Ontology | regulation of cell division | 1 |
| GO:0006357 | IBA | GOA Database | regulation of transcription by RNA polymerase II | |
| GO:0045944 | IEA | Gene Ontology | positive regulation of transcription by RNA polymerase II | |
| GO:0045944 | IEA | InterPro | positive regulation of transcription by RNA polymerase II | |
| GO:0048440 | IMP | Gene Ontology | carpel development | 4 |
| GO:0048481 | IMP, IGI | Gene Ontology | plant ovule development | 4 5 |
| GO:0048316 | IGI | Gene Ontology | seed development | 5 |
| GO:0080155 | IGI | Gene Ontology | regulation of double fertilization forming a zygote and endosperm | 5 |
| GO:0010214 | IMP | Gene Ontology | seed coat development | 3 |
| GO:1903338 | IMP | Gene Ontology | regulation of cell wall organization or biogenesis | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000978 | IBA | GOA Database | RNA polymerase II cis-regulatory region sequence-specific DNA binding | |
| GO:0005515 | IDA, IPI | Gene Ontology | protein binding | 4 6 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IDA | Gene Ontology | DNA binding | 3 |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0000981 | IBA | GOA Database | DNA-binding transcription factor activity, RNA polymerase II-specific | |
| GO:0046983 | IEA | Gene Ontology | protein dimerization activity | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0003700 | IDA ISS IEA | Gene Ontology | DNA-binding transcription factor activity | 7 8 |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0000977 | IEA | Gene Ontology | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0000977 | IEA | InterPro | RNA polymerase II transcription regulatory region sequence-specific DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0090397 | IDA | Gene Ontology | stigma papilla | 6 |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 3 |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.14 | RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) |