Gene: AT3G61120
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G61120
- Transcript Identifier AT3G61120.1
- Gene Type Coding gene
- Location Chr3 : 22618414-22620466 : negative
Gene Family Information
- ID HOM05D000042
- #Genes/#Species 4894/100
- Phylogenetic origin
- ID ORTHO05D000028
- #Genes/#Species 3637/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G61120.1
- symbol AGL13
- uniprot Q38837
Descriptions
- Description AGAMOUS-like 13
- Computational description AGAMOUS-like 13 (AGL13); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 6 (TAIR:AT2G45650.1); Has 7229 Blast hits to 7228 proteins in 913 species: Archae - 0; Bacteria - 0; Metazoa - 632; Fungi - 307; Plants - 6214; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0045944 | IEA | Gene Ontology | positive regulation of transcription by RNA polymerase II | |
| GO:0045944 | IEA | InterPro | positive regulation of transcription by RNA polymerase II | |
| GO:0006357 | IBA | Gene Ontology | regulation of transcription by RNA polymerase II | 1 |
| GO:0048481 | IMP | Gene Ontology | plant ovule development | 2 |
| GO:0010468 | IMP | Gene Ontology | regulation of gene expression | 2 |
| GO:0009555 | IMP | Gene Ontology | pollen development | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | IEA | GOA Database | DNA-binding transcription factor activity | |
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 3 |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0000977 | IEA | GOA Database | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0000977 | IEA | InterPro | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0046983 | IEA | Gene Ontology | protein dimerization activity | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0000981 | IBA | Gene Ontology | DNA-binding transcription factor activity, RNA polymerase II-specific | 1 |
| GO:0000978 | IBA | Gene Ontology | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 1 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.14 | RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) |