Gene: AT1G24260

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G24260
  • Transcript Identifier AT1G24260.1
  • Gene Type Coding gene
  • Location Chr1 : 8593790-8595862 : negative

Gene Family Information

  • ID HOM05D000042
  • #Genes/#Species 4894/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G24260.1
  • symbol SEP3
  • Alias AGL9,AGAMOUS-like 9
  • full_name SEPALLATA3
  • uniprot O22456

Descriptions

  • Description K-box region and MADS-box transcription factor family protein
  • Computational description SEPALLATA3 (SEP3); FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G15800.1); Has 7422 Blast hits to 7421 proteins in 918 species: Archae - 0; Bacteria - 2; Metazoa - 630; Fungi - 302; Plants - 6411; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0080001
IMP
Gene Ontologymucilage extrusion from seed coat1
GO:0006357
IBA
Gene Ontologyregulation of transcription by RNA polymerase II2
GO:0009908
IEA
GOA Databaseflower development
GO:0009908
TAS
Gene Ontologyflower development3
GO:0030154
IEA
GOA Databasecell differentiation
GO:0010214
IMP
Gene Ontologyseed coat development1
GO:0045944
IEA
Gene Ontologypositive regulation of transcription by RNA polymerase II
GO:0045944
IEA
InterPropositive regulation of transcription by RNA polymerase II
GO:0001708
IMP
Gene Ontologycell fate specification4
GO:0010093
IMP
Gene Ontologyspecification of floral organ identity4
GO:0048481
IMP
Gene Ontologyplant ovule development5
GO:0048833
IMP
Gene Ontologyspecification of floral organ number6

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000981
IBA
Gene OntologyDNA-binding transcription factor activity, RNA polymerase II-specific2
GO:0000978
IBA
Gene OntologyRNA polymerase II cis-regulatory region sequence-specific DNA binding2
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IDA
ISS
Gene OntologyDNA binding7
GO:0003677
IEA
InterProDNA binding
GO:0046983
IEA
Gene Ontologyprotein dimerization activity
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003700
ISS
TAS, IEA
Gene OntologyDNA-binding transcription factor activity3 8
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0000977
IEA
Gene OntologyRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000977
IEA
InterProRNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0005515
IPI
Gene Ontologyprotein binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA, HDA
ISM
Gene Ontologynucleus9 10
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002100 Transcription factor, MADS-box
IPR036879 Transcription factor, MADS-box superfamily
IPR002487 Transcription factor, K-box
IPR033896 MADS MEF2-like
Mapman id Description
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)