Gene: AT2G45650
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT2G45650
- Transcript Identifier AT2G45650.1
- Gene Type Coding gene
- Location Chr2 : 18804453-18806291 : positive
Gene Family Information
- ID HOM05D000042
- #Genes/#Species 4894/100
- Phylogenetic origin
- ID ORTHO05D000028
- #Genes/#Species 3637/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT2G45650.1
- symbol AGL6
- Alias RSB1,REDUCED SHOOT BRANCHING 1
- uniprot Q1PEU3
Descriptions
- Description AGAMOUS-like 6
- Computational description AGAMOUS-like 6 (AGL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, floral organ development; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 13 (TAIR:AT3G61120.1); Has 7294 Blast hits to 7293 proteins in 914 species: Archae - 0; Bacteria - 0; Metazoa - 630; Fungi - 307; Plants - 6281; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0080112 | ISO | PLAZA Integrative Orthology | seed growth | Os02g0682200 |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0045944 | IEA | Gene Ontology | positive regulation of transcription by RNA polymerase II | |
| GO:0045944 | IEA | InterPro | positive regulation of transcription by RNA polymerase II | |
| GO:0080060 | ISO | PLAZA Integrative Orthology | integument development | Os02g0682200 |
| GO:0010022 | ISO | PLAZA Integrative Orthology | meristem determinacy | Os02g0682200 |
| GO:0010582 | ISO | PLAZA Integrative Orthology | floral meristem determinacy | Os02g0682200 |
| GO:0048509 | ISO | PLAZA Integrative Orthology | regulation of meristem development | Os02g0682200 |
| GO:0010093 | ISO | PLAZA Integrative Orthology | specification of floral organ identity | Os04g0580700 |
| GO:0010094 | ISO | PLAZA Integrative Orthology | specification of carpel identity | Os02g0682200 |
| GO:0048449 | ISO | PLAZA Integrative Orthology | floral organ formation | Os02g0682200 |
| GO:0048316 | ISO | PLAZA Integrative Orthology | seed development | Os02g0682200 |
| GO:0048459 | ISO | PLAZA Integrative Orthology | floral whorl structural organization | Os02g0682200 |
| GO:0048833 | ISO | PLAZA Integrative Orthology | specification of floral organ number | Os02g0682200 |
| GO:0048457 | ISO | PLAZA Integrative Orthology | floral whorl morphogenesis | Os02g0682200 |
| GO:0009553 | ISO | PLAZA Integrative Orthology | embryo sac development | Os02g0682200 |
| GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | Os04g0580700 |
| GO:0048444 | ISO | PLAZA Integrative Orthology | floral organ morphogenesis | Os04g0580700 |
| GO:0048455 | ISO | PLAZA Integrative Orthology | stamen formation | Os02g0682200 |
| GO:0010228 | IMP | Gene Ontology | vegetative to reproductive phase transition of meristem | 1 |
| GO:0048437 | IMP | Gene Ontology | floral organ development | 1 |
| GO:0009911 | IMP | Gene Ontology | positive regulation of flower development | 2 |
| GO:0006357 | IBA | Gene Ontology | regulation of transcription by RNA polymerase II | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000977 | IEA | GOA Database | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0000977 | IEA | InterPro | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0000978 | IBA | Gene Ontology | RNA polymerase II cis-regulatory region sequence-specific DNA binding | 3 |
| GO:0046983 | IEA | Gene Ontology | protein dimerization activity | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0003700 | IEA | GOA Database | DNA-binding transcription factor activity | |
| GO:0003700 | ISS | Gene Ontology | DNA-binding transcription factor activity | 4 |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 5 |
| GO:0000976 | IPI | Gene Ontology | transcription cis-regulatory region binding | 6 |
| GO:0000981 | IBA | Gene Ontology | DNA-binding transcription factor activity, RNA polymerase II-specific | 3 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.14 | RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) |