Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold1G00443 scaffold1 + View
SGA_v2.0_scaffold172G39037 scaffold172 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr5.1354 chr5 + View
Actinidia chinensis Actinidia24875 Lachesis_group15 - View
Actinidia chinensis Actinidia24317 Lachesis_group24 + View
Actinidia chinensis Actinidia21093 Lachesis_group9 - View
Avicennia marina MSTRG.21578 ScioBoG_26769_HRSCAF_26899 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.TWVU8P K10523 - speckle-type POZ protein (SPOP) arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.A338HQ KOG3448 - Predicted snRNP core protein arahy.Tifrunner.gnm1.Arahy.16 - View
Arabidopsis thaliana AT1G03330 Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein%3B CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163)%2C U6 snRNA-associated Sm-like protein LSm2 (InterPro:IPR016654)%2C Like-Sm ribonucleoprotein (LSM) domain%2C eukaryotic/archaea-type (InterPro:IPR006649)%2C Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920)%3B Has 762 Blast hits to 762 proteins in 209 species: Archae - 2%3B Bacteria - 0%3B Metazoa - 303%3B Fungi - 225%3B Plants - 97%3B Viruses - 0%3B Other Eukaryotes - 135 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC05g24542 ChrC05 + View
Brassica napus A10p01870 A10 - View
Brassica oleracea BolC5t28963H C5 - View
Brassica rapa BraA10t42461Z A10 - View
Camellia sinensis var. sinensis CSS0020898 uncharacterized protein LOC100305778 [Glycine max] Chr11 - View
Camellia sinensis var. sinensis CSS0039726 PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Eucalyptus grandis] Chr13 - View
Cannabis sativa CANSAT25G2118 NC_044370.1 - View
Cicer arietinum L. Ca_08562_v3 Ca_LG3_v3 + View
Corylus avellana Haze_04755 Similar to BPM2: BTB/POZ and MATH domain-containing protein 2 (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc01_g19800 U6 snRNA-associated Sm-like protein LSm2 chr1 - View
Citrus clementina Ciclev10023059m.g scaffold_3 - View
Ceratophyllum demersum CDE01G0701 11 - View
Carpinus fangiana Cfa006100 Cfa02 + View
Cardamine hirsuta CARHR002640 U6 snRNA-associated Sm-like protein LSm2 Chr1 - View
Carya illinoinensis CiPaw.07G094800 K12621 - U6 snRNA-associated Sm-like protein LSm2 (LSM2) Chr07 - View
Carya illinoinensis CiPaw.08G103000 K12621 - U6 snRNA-associated Sm-like protein LSm2 (LSM2) Chr08 + View
Citrullus lanatus ClCG06G005710 Speckle-type POZ protein, putative CG_Chr06 + View
Cucumis melo MELO3C021393.2 BTB-POZ and MATH domain 2 chr11 - View
Capsella rubella Carub.0001s0244 K12621 - U6 snRNA-associated Sm-like protein LSm2 (LSM2) scaffold_1 - View
Daucus carota DCAR_002756 hypothetical protein DCARv2_Chr1 - View
Daucus carota DCAR_018402 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv32966 GWHABJS00000010 - View
Davidia involucrata Dinv11259 GWHABJS00000007 + View
Durio zibethinus Duzib211G0679 NW_019168049.1 + View
Durio zibethinus Duzib138G1757 NW_019167893.1 + View
Durio zibethinus Duzib133G1496 NW_019167938.1 + View
Eucalyptus grandis Eucgr.K03403 Chr11 - View
Erythranthe guttata Migut.D00259 scaffold_4 + View
Eutrema salsugineum Thhalv10009199m.g K12621 - U6 snRNA-associated Sm-like protein LSm2 (LSM2) scaffold_5 + View
Fragaria x ananassa FAN20G2590 K10523 - speckle-type POZ protein (SPOP) Fvb2-3 + View
Fragaria x ananassa FAN27G0978 K10523 - speckle-type POZ protein (SPOP) Fvb2-1 - View
Fragaria x ananassa FAN24G2483 K10523 - speckle-type POZ protein (SPOP) Fvb2-2 + View
Fragaria vesca FvH4_2g24040 K10523 - speckle-type POZ protein (SPOP) Fvb2 - View
Gossypium hirsutum Gohir.A08G069900 PTHR13829//PTHR13829:SF2 - SNRNP CORE PROTEIN FAMILY MEMBER // U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM2 A08 - View
Gossypium hirsutum Gohir.D11G124900 K10523 - speckle-type POZ protein (SPOP) D11 + View
Gossypium hirsutum Gohir.A11G120200 K10523 - speckle-type POZ protein (SPOP) A11 + View
Gossypium hirsutum Gohir.D08G203300 KOG1987 - Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains D08 + View
Gossypium hirsutum Gohir.D08G079000 K12621 - U6 snRNA-associated Sm-like protein LSm2 (LSM2) D08 + View
Gossypium hirsutum Gohir.A08G185200 KOG1987 - Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains A08 + View
Glycine max Glyma.10G024300 K10523 - speckle-type POZ protein (SPOP) Gm10 + View
Glycine max Glyma.02G149600 K10523 - speckle-type POZ protein (SPOP) Gm02 - View
Glycine max Glyma.19G153400 K10523 - speckle-type POZ protein (SPOP) Gm19 + View
Glycine max Glyma.03G150800 K10523 - speckle-type POZ protein (SPOP) Gm03 + View
Gossypium raimondii Gorai.004G083500 Chr04 - View
Gossypium raimondii Gorai.007G134100 Chr07 + View
Gossypium raimondii Gorai.004G215300 Chr04 + View
Hydrangea macrophylla Hma1.2p1_0257F.1_g103820 Hma1.2p1_0257F.1 - View
Hydrangea macrophylla Hma1.2p1_0628F.1_g191810 Hma1.2p1_0628F.1 + View
Lupinus albus Lalb_Chr21g0306571 K12621 - U6 snRNA-associated Sm-like protein LSm2 (LSM2) Lalb_Chr21 - View
Lupinus albus Lalb_Chr02g0142891 PTHR13829//PTHR13829:SF2 - SNRNP CORE PROTEIN FAMILY MEMBER // U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM2 Lalb_Chr02 - View
Lotus japonicus Lj1g0007647 K10523 - speckle-type POZ protein (SPOP) chr1 - View
Lonicera japonica Lj2C1179G14 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_9_4501 Lsat_1_v8_lg_9 + View
Lactuca sativa Lsat_1_v5_gn_5_187481 Lsat_1_v8_lg_5 + View
Magnolia biondii MBI17_g11989_MAGBIO AED:0.15 Chr17 + View
Malus domestica MD03G1269700 BTB-POZ and MATH domain 2 Chr03 - View
Malus domestica MD11G1290500 BTB-POZ and MATH domain 2 Chr11 - View
Manihot esculenta Manes.01G210300 Chromosome01 - View
Manihot esculenta Manes.03G186200 Chromosome03 - View
Manihot esculenta Manes.05G073000 Chromosome05 + View
Medicago truncatula Medtr7g094490 BTB/POZ/MATH-domain protein chr7 + View
Nelumbo nucifera Nn1g02137 chr1 + View
Nicotiana tabacum Nitab4.5_0002093g0040 Like-Sm (LSM) domain, U6 snRNA-associated Sm-like protein LSm2, Ribonucleoprotein LSM domain, eukaryotic/archaea-type, Ribonucleoprotein LSM domain Nitab4.5_0002093 - View
Nicotiana tabacum Nitab4.5_0001323g0030 U6 snRNA-associated Sm-like protein LSm2, Ribonucleoprotein LSM domain, Like-Sm (LSM) domain, Ribonucleoprotein LSM domain, eukaryotic/archaea-type Nitab4.5_0001323 - View
Olea europaea Oeu011172.1 scaffold1424 - View
Punica granatum PGR044G0879 NC_045134.1 - View
Prunus persica Prupe.8G245800 K10523 - speckle-type POZ protein (SPOP) Pp08 - View
Papaver somniferum PSO210G0485 NC_039359.1 + View
Phaseolus vulgaris Phvul.007G169300 Chr07 + View
Phaseolus vulgaris Phvul.001G148400 K10523 - speckle-type POZ protein (SPOP) Chr01 + View
Quercus lobata QL12p022659 12 - View
Rosa chinensis RcHm_v2.0_Chr6g0291771 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim01G0276800 chr01 - View
Rhododendron simsii Rhsim13G0022300 chr13 + View
Salvia bowleyana SalBow4G1726 GWHASIU00000008 + View
Salvia bowleyana SalBow6G0773 GWHASIU00000002 + View
Simmondsia chinensis Sc19g0004620 GWHAASQ00000019 - View
Simmondsia chinensis Sc05g0005070 GWHAASQ00000005 + View
Solanum lycopersicum Solyc09g072970.3 U6 snRNA-associated Sm-like protein LSm2 (AHRD V3.3 *** A0A2G2ZWI3_CAPAN) SL4.0ch09 - View
Solanum lycopersicum Solyc06g084350.3 U6 snRNA-associated Sm-like protein LSm2 (AHRD V3.3 *** A0A2G2ZWI3_CAPAN) SL4.0ch06 - View
Schrenkiella parvula Sp1g02320 K12621 - U6 snRNA-associated Sm-like protein LSm2 (LSM2) ch1-1 - View
Solanum pennellii Sopen09g028780 Small nuclear ribonucleoprotein family protein | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain , U6 snRNA-associated Sm-like protein LSm2 , Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type , Like-Sm ribonucleoprotein (LSM)-related domain Spenn-ch09 - View
Solanum pennellii Sopen06g035740 Small nuclear ribonucleoprotein family protein | CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain , U6 snRNA-associated Sm-like protein LSm2 , Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type , Like-Sm ribonucleoprotein (LSM)-related domain Spenn-ch06 - View
Solanum tuberosum PGSC0003DMG400003836 Speckle-type POZ protein ST4.03ch09 - View
Solanum tuberosum PGSC0003DMG400020045 Speckle-type POZ protein ST4.03ch06 - View
Theobroma cacao Thecc.01G284300 Chromosome_1 - View
Tarenaya hassleriana THA.LOC104801217 sm-like protein LSM2 NW_010969548.1 + View
Tripterygium wilfordii TWI59G0344 NC_052248.1 + View
Tripterygium wilfordii TWI23G0153 NC_052239.1 + View
Vaccinium macrocarpon vmacro14940 Similar to LSM2: Sm-like protein LSM2 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro02547 Similar to BPM2: BTB/POZ and MATH domain-containing protein 2 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0720G2654 CM024071.1 - View
Vigna mungo VMungo1383G0226 CM024070.1 + View
Vitis vinifera GSVIVG01011077001 chr7 - View