Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0014168 unnamed protein product [Vitis vinifera] Chr11 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G2540 LG-3 - View
Aethionema arabicum Aa31LG5G21680 LG-5 - View
Acer truncatum Atru.chr8.1639 chr8 - View
Acer truncatum Atru.chr12.965 chr12 + View
Acer truncatum Atru.chr3.3382 chr3 - View
Actinidia chinensis Actinidia18574 Lachesis_group17 - View
Actinidia chinensis Actinidia31292 Lachesis_group20 - View
Arabidopsis lyrata AL3G21300 scaffold_3 - View
Arabidopsis lyrata AL4G32670 scaffold_4 - View
Avicennia marina MSTRG.19228 ScioBoG_25048_HRSCAF_25167 + View
Amaranthus hybridus Ah.08g210980 Protein ROS1A (EC 3.2.2.-) (Protein REPRESSOR OF SILENCING 1 homolog a) (Protein ROS1 homolog) (OsROS1) (Protein THICK ALEURONE 2) AmaHy_arrow1_Scaffold_8 - View
Aquilegia oxysepala Aqoxy1G00942 CHR01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.66FLD0 PTHR10359//PTHR10359:SF28 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // TRANSCRIPTIONAL ACTIVATOR DEMETER arahy.Tifrunner.gnm1.Arahy.19 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.CUT3DD PTHR10359//PTHR10359:SF28 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // TRANSCRIPTIONAL ACTIVATOR DEMETER arahy.Tifrunner.gnm1.Arahy.09 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.K8W5NT PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED arahy.Tifrunner.gnm1.Arahy.02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.N246S2 3.2.2.27//4.2.99.18 - Uracil-DNA glycosylase / Uracil-DNA N-glycosylase // DNA-(apurinic or apyrimidinic site) lyase / Phage-T4 UV endonuclease arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.AM3VD0 PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED arahy.Tifrunner.gnm1.Arahy.12 - View
Arabidopsis thaliana AT2G36490 demeter-like 1 A repressor of transcriptional gene silencing. Functions by demethylating the target promoter DNA. Interacts physically with RPA2/ROR1. In the ros1 mutants%2C an increase in methylation is observed in a number of gene promoters. Among the loci affected by ros1%2C a few (RD29A and At1g76930) are affected in cytosine methylation in all sequence contexts (CpG%2C CpNpG or CpNpN)%2C although many others are affected primarily in non-CpG contexts. demeter-like 1 (DML1)%3B FUNCTIONS IN: protein binding%2C DNA N-glycosylase activity%2C DNA-(apurinic or apyrimidinic site) lyase activity%3B INVOLVED IN: DNA repair%2C chromatin silencing%2C negative regulation of chromatin silencing%2C DNA methylation%2C DNA demethylation%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257)%2C Endonuclease III-like%2C iron-sulphur cluster loop motif (InterPro:IPR003651)%2C HhH-GPD domain (InterPro:IPR003265)%3B BEST Arabidopsis thaliana protein match is: HhH-GPD base excision DNA repair family protein (TAIR:AT5G04560.1)%3B Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798%3B Bacteria - 22429%3B Metazoa - 974%3B Fungi - 991%3B Plants - 531%3B Viruses - 0%3B Other Eukaryotes - 9610 (source: NCBI BLink). Chr2 - View
Amborella trichopoda ATR0820G039 AmTr_v1.0_scaffold00040 + View
Brassica carinata BcaB02g09350 ChrB02 + View
Brassica carinata BcaC02g11765 ChrC02 - View
Brassica napus A05p09310 A05 + View
Brassica oleracea BolC4t22808H C4 + View
Brassica rapa BraA05t19888Z A05 + View
Beta vulgaris EL10Ac7g16995 PF15628//PF15629 - RRM in Demeter (RRM_DME) // Permuted single zf-CXXC unit (Perm-CXXC) Chr7_EL10_PGA_scaffold5 - View
Capsicum annuum CAN.G824.26 PGAv.1.6.scaffold824 + View
Capsicum annuum CAN.G1138.12 PGAv.1.6.scaffold1138 + View
Cannabis sativa CANSAT80G1516 NC_044372.1 + View
Cannabis sativa CANSAT54G2606 NC_044375.1 + View
Cicer arietinum L. Ca_11623_v3 Ca_LG4_v3 + View
Cicer arietinum L. Ca_01678_v3 Ca_LG1_v3 - View
Corylus avellana Haze_19533 Similar to ROS1A: Protein ROS1A (Oryza sativa subsp. japonica OX%3D39947) 10 + View
Corylus avellana Haze_02614 Similar to DME: Transcriptional activator DEMETER (Arabidopsis thaliana OX%3D3702) 1 - View
Coffea canephora Cc06_g05230 Putative Repressor of silencing 1 chr6 + View
Citrus clementina Ciclev10027676m.g scaffold_8 - View
Citrus clementina Ciclev10030474m.g scaffold_4 - View
Citrus clementina Ciclev10010892m.g scaffold_6 - View
Cardamine hirsuta CARHR130800 DNA glycosylase Chr4 - View
Carya illinoinensis CiPaw.14G028400 PTHR10359:SF28 - TRANSCRIPTIONAL ACTIVATOR DEMETER Chr14 + View
Carya illinoinensis CiPaw.09G008500 PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED Chr09 + View
Citrullus lanatus ClCG04G009770 DEMETER CG_Chr04 + View
Citrullus lanatus ClCG10G019400 Repressor of silencing 1 CG_Chr10 - View
Cucumis melo MELO3C009432.2 protein ROS1 chr04 - View
Cucumis melo MELO3C021451.2 protein ROS1-like isoform X1 chr11 + View
Cucumis melo MELO3C024516.2 protein ROS1 chr08 - View
Corchorus olitorius COL.COLO4_29819 hypothetical protein AWUE01020406.1 - View
Carica papaya Cpa.g.sc5.80 supercontig_5 - View
Chenopodium quinoa AUR62033581 DME: Transcriptional activator DEMETER C_Quinoa_Scaffold_1776 - View
Chenopodium quinoa AUR62041417 ROS1: Protein ROS1 C_Quinoa_Scaffold_3863 + View
Capsella rubella Carub.0004s1830 PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED scaffold_4 - View
Cucumis sativus L. CsaV3_6G014730 protein ROS1-like isoform X1 chr6 + View
Cucumis sativus L. CsaV3_3G036780 protein ROS1 chr3 + View
Cucumis sativus L. CsaV3_6G040410 Transcriptional activator demeter chr6 + View
Davidia involucrata Dinv21259 GWHABJS00000021 - View
Davidia involucrata Dinv19826 GWHABJS00000015 + View
Durio zibethinus Duzib093G0950 NW_019167937.1 - View
Erigeron canadensis ECA238G4359 Conyza_canadensis_scaffold:6 - View
Eucalyptus grandis Eucgr.A01547 Chr01 + View
Erythranthe guttata Migut.J00987 scaffold_10 - View
Eutrema salsugineum Thhalv10016139m.g PTHR10359:SF22 - DEMETER-LIKE PROTEIN 2-RELATED scaffold_10 - View
Fragaria x ananassa FAN14G4458 PTHR10359:SF22 - DEMETER-LIKE PROTEIN 2-RELATED Fvb6-1 + View
Fragaria x ananassa FAN05G4586 PTHR10359:SF22 - DEMETER-LIKE PROTEIN 2-RELATED Fvb6-3 - View
Fragaria x ananassa FAN09G1539 PTHR10359:SF22 - DEMETER-LIKE PROTEIN 2-RELATED Fvb6-2 - View
Fragaria x ananassa FAN05G3005 PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED Fvb6-3 - View
Fragaria x ananassa FAN02G1301 PTHR10359:SF22 - DEMETER-LIKE PROTEIN 2-RELATED Fvb6-4 + View
Fragaria vesca FvH4_6g17860 PTHR10359:SF22 - DEMETER-LIKE PROTEIN 2-RELATED Fvb6 + View
Gossypium hirsutum Gohir.A09G136700 PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED A09 + View
Gossypium hirsutum Gohir.A04G066400 3.2.2.27 - Uracil-DNA glycosylase / Uracil-DNA N-glycosylase A04 - View
Gossypium hirsutum Gohir.D04G104500 3.2.2.27 - Uracil-DNA glycosylase / Uracil-DNA N-glycosylase D04 - View
Glycine max Glyma.20G188300 PTHR10359//PTHR10359:SF28 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // TRANSCRIPTIONAL ACTIVATOR DEMETER Gm20 - View
Glycine max Glyma.13G151000 3.2.2.27 - Uracil-DNA glycosylase / Uracil-DNA N-glycosylase Gm13 + View
Glycine max Glyma.10G065900 PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED Gm10 + View
Glycine max Glyma.03G190800 PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED Gm03 + View
Glycine max Glyma.10G202150 PTHR10359//PTHR10359:SF28 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // TRANSCRIPTIONAL ACTIVATOR DEMETER Gm10 + View
Gossypium raimondii Gorai.009G088400 Chr09 - View
Gossypium raimondii Gorai.006G158300 Chr06 - View
Gossypium raimondii Gorai.009G408300 Chr09 - View
Lupinus albus Lalb_Chr21g0315671 PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED Lalb_Chr21 - View
Lupinus albus Lalb_Chr01g0018331 PTHR10359:SF22 - DEMETER-LIKE PROTEIN 2-RELATED Lalb_Chr01 - View
Lotus japonicus Lj3g0024881 3.2.2.27 - Uracil-DNA glycosylase / Uracil-DNA N-glycosylase chr3 - View
Lotus japonicus Lj5g0003988 PTHR10359:SF22 - DEMETER-LIKE PROTEIN 2-RELATED chr5 - View
Lotus japonicus Lj1g0027290 3.2.2.27 - Uracil-DNA glycosylase / Uracil-DNA N-glycosylase chr1 - View
Lonicera japonica Lj3A1003T41 GWHAAZE00000003 - View
Lonicera japonica Lj2A129T52 GWHAAZE00000002 + View
Malus domestica MD14G1015300 HhH-GPD base excision DNA repair family protein Chr14 + View
Malus domestica MD12G1017600 HhH-GPD base excision DNA repair family protein Chr12 + View
Malus domestica MD11G1157400 demeter-like 1 Chr11 + View
Manihot esculenta Manes.08G020500 Chromosome08 + View
Manihot esculenta Manes.09G060800 Chromosome09 - View
Medicago truncatula Medtr7g103680 HhH-GPD base excision DNA repair family protein chr7 + View
Medicago truncatula Medtr1g061220 endonuclease/exonuclease/phosphatase family protein chr1 - View
Nelumbo nucifera Nn2g13995 chr2 + View
Nicotiana tabacum Nitab4.5_0000132g0200 Helix-turn-helix, base-excision DNA repair, C-terminal, HhH-GPD domain, DNA glycosylase Nitab4.5_0000132 - View
Nicotiana tabacum Nitab4.5_0001922g0010 DNA glycosylase, HhH-GPD domain, Endonuclease III-like, iron-sulphur cluster loop motif, Helix-turn-helix, base-excision DNA repair, C-terminal Nitab4.5_0001922 - View
Olea europaea Oeu040537.2 chr20 - View
Petunia axillaris Peaxi162Scf00110g01921 repressor of silencing 3 [Nicotiana tabacum] Peaxi162Scf00110 + View
Petunia axillaris Peaxi162Scf00433g00067 repressor of silencing 1 [Nicotiana tabacum] Peaxi162Scf00433 - View
Punica granatum PGR004G0133 NC_045131.1 - View
Punica granatum PGR119G1632 NC_045132.1 - View
Prunus persica Prupe.2G089400 PTHR10359:SF28 - TRANSCRIPTIONAL ACTIVATOR DEMETER Pp02 - View
Prunus persica Prupe.6G119100 Pp06 + View
Prunus persica Prupe.7G118000 Pp07 - View
Pisum sativum Psat3g035920 RRM in Demeter chr3LG5 - View
Papaver somniferum PSO339G3200 NC_039366.1 + View
Papaver somniferum PSO384G4302 NC_039368.1 - View
Populus trichocarpa Potri.008G025900 PTHR10359//PTHR10359:SF28 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // TRANSCRIPTIONAL ACTIVATOR DEMETER Chr08 - View
Populus trichocarpa Potri.006G116000 PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED Chr06 - View
Phaseolus vulgaris Phvul.001G186500 PTHR10359:SF22 - DEMETER-LIKE PROTEIN 2-RELATED Chr01 + View
Phaseolus vulgaris Phvul.007G223600 PTHR10359:SF22 - DEMETER-LIKE PROTEIN 2-RELATED Chr07 - View
Quercus lobata QL07p040602 7 - View
Rosa chinensis RcHm_v2.0_Chr3g0472091 RcHm_v2.0_Chr3 + View
Rhododendron simsii Rhsim03G0081500 chr03 - View
Rhododendron simsii Rhsim04G0135900 chr04 - View
Striga asiatica SGA_v2.0_scaffold40G15408 scaffold40 - View
Salvia bowleyana SalBow3G3680 GWHASIU00000006 - View
Salix brachista Sabra10G0181700 GWHAAZH00000010 + View
Salix brachista Sabra06G0090700 GWHAAZH00000006 - View
Simmondsia chinensis Sc20g0006010 GWHAASQ00000020 + View
Simmondsia chinensis Sc02g0001140 GWHAASQ00000002 - View
Sechium edule Sed0001020 LG04 + View
Solanum lycopersicum Solyc09g009080.4 DNA demethylase1 SL4.0ch09 + View
Solanum lycopersicum Solyc10g083630.2 DNA demethylase 2 SL4.0ch10 - View
Schrenkiella parvula Sp4g18800 PTHR10359//PTHR10359:SF22 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // DEMETER-LIKE PROTEIN 2-RELATED ch4-6 - View
Solanum pennellii Sopen11g003420 Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. | DEMETER (DME) | CONTAINS InterPro DOMAIN/s: DNA glycosylase , Endonuclease III-like, iron-sulphur cluster loop motif , HhH-GPD domain | BEST Arabidopsis thaliana protein match is: demeter-like 1 Spenn-ch11 - View
Solanum pennellii Sopen10g033100 Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. | DEMETER (DME) | CONTAINS InterPro DOMAIN/s: DNA glycosylase , Endonuclease III-like, iron-sulphur cluster loop motif , HhH-GPD domain | BEST Arabidopsis thaliana protein match is: demeter-like 1 Spenn-ch10 - View
Solanum pennellii Sopen09g003780 Encodes a DNA glycosylase DEMETER (DME). Responsible for endosperm maternal-allele-specific hypomethylation at the MEDEA (MEA) gene. DME can excise 5-methylcytosine in vitro and when expressed in E. coli. DME establishes MEA imprinting by removing 5-methylcytosine to activate the maternal allele. | DEMETER (DME) | CONTAINS InterPro DOMAIN/s: DNA glycosylase , Endonuclease III-like, iron-sulphur cluster loop motif , HhH-GPD domain | BEST Arabidopsis thaliana protein match is: demeter-like 1 Spenn-ch09 + View
Solanum tuberosum PGSC0003DMG400028264 Repressor of silencing 1 ST4.03ch10 + View
Solanum tuberosum PGSC0003DMG400002719 Repressor of silencing 1 ST4.03ch09 - View
Trochodendron aralioides TAR369G0069 group18 + View
Trochodendron aralioides TAR633G1723 group2 - View
Trochodendron aralioides TAR623G1502 group7 - View
Theobroma cacao Thecc.10G101300 DNA N-glycosylase/DNA-(Apurinic or apyrimidinic site) lyase Chromosome_10 + View
Theobroma cacao Thecc.05G080600 Repressor of gene silencing 1 Chromosome_5 + View
Theobroma cacao Thecc.09G291800 HhH-GPD base excision DNA repair family protein Chromosome_9 - View
Tarenaya hassleriana THA.LOC104827483 protein ROS1 isoform X1 NW_010967708.1 - View
Tarenaya hassleriana THA.LOC104816669 transcriptional activator DEMETER NW_010965775.1 - View
Trifolium pratense TPR.G10256 Tp57577_TGAC_v2_LG6 - View
Trifolium pratense TPR.G5703 Tp57577_TGAC_v2_LG1 - View
Tripterygium wilfordii TWI53G2113 NC_052244.1 - View
Tripterygium wilfordii TWI77G0704 NC_052236.1 - View
Tripterygium wilfordii TWI75G0699 NC_052253.1 + View
Utricularia gibba unitig_27.g25399 unitig_27 + View
Vaccinium macrocarpon vmacro07365 Similar to ROS1: DNA glycosylase/AP lyase ROS1 (Arabidopsis thaliana OX%3D3702) scaffold00230_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro08815 Similar to ROS1A: Protein ROS1A (Oryza sativa subsp. japonica OX%3D39947) chr6_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0720G0212 CM024071.1 - View
Vigna mungo VMungo1383G2283 CM024070.1 + View
Vitis vinifera GSVIVG01034713001 chr13 - View
Vitis vinifera GSVIVG01033777001 chr8 - View