Gene: Potri.008G025900
General Information
Structural Information
- Species Populus trichocarpa
- Gene Identifier Potri.008G025900
- Transcript Identifier Potri.008G025900.7
- Gene Type Coding gene
- Location Chr08 : 1324596-1334029 : negative
Gene Family Information
- ID HOM05D001201
- #Genes/#Species 520/96
- Phylogenetic origin
- ID ORTHO05D001100
- #Genes/#Species 487/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id Potri.008G025900.v4.1
- pacid 42805846
- synonym POPTR_0008s02610
Descriptions
- Description PTHR10359//PTHR10359:SF28 - A/G-SPECIFIC ADENINE GLYCOSYLASE/ENDONUCLEASE III // TRANSCRIPTIONAL ACTIVATOR DEMETER
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006281 | IEA | InterPro | DNA repair | |
| GO:0006284 | IEA | InterPro | base-excision repair | |
| GO:0080111 | IEA | InterPro | DNA demethylation | |
| GO:0010154 | ISO | PLAZA Integrative Orthology | fruit development | Solyc11g007580.3 |
| GO:0006349 | ISO | PLAZA Integrative Orthology | regulation of gene expression by genetic imprinting | AT5G04560 |
| GO:0009836 | ISO | PLAZA Integrative Orthology | fruit ripening, climacteric | Solyc11g007580.3 |
| GO:0006306 | ISO | PLAZA Integrative Orthology | DNA methylation | AT5G04560 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT5G04560 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051539 | IEA | InterPro | 4 iron, 4 sulfur cluster binding | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0019104 | IEA | InterPro | DNA N-glycosylase activity | |
| GO:0035514 | IEA | InterPro | DNA demethylase activity | |
| GO:0003906 | ISO | PLAZA Integrative Orthology | DNA-(apurinic or apyrimidinic site) endonuclease activity | AT5G04560 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0043078 | ISO | PLAZA Integrative Orthology | polar nucleus | AT5G04560 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR003651 | Endonuclease III-like, iron-sulphur cluster loop motif |
| IPR011257 | DNA glycosylase |
| IPR028925 | Demeter, RRM-fold domain |
| IPR003265 | HhH-GPD domain |
| IPR023170 | Helix-hairpin-helix, base-excision DNA repair, C-terminal |
| IPR028924 | Permuted single zf-CXXC unit |
| IPR044811 | DNA glycosylase, plant |